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Li K, Li WJ, Liang K, Li FF, Qin GQ, Liu JH, Zhang YL, Li XJ. Gut microorganisms of Locusta migratoria in various life stages and its possible influence on cellulose digestibility. mSystems 2024; 9:e0060024. [PMID: 38888356 PMCID: PMC11264664 DOI: 10.1128/msystems.00600-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2024] [Accepted: 05/13/2024] [Indexed: 06/20/2024] Open
Abstract
Locusta migratoria is an important phytophagous pest, and its gut microbial communities play an important role in cellulose degradation. In this study, the gut microbial and cellulose digestibility dynamics of Locusta migratoria were jointly analyzed using high-throughput sequencing and anthrone colorimetry. The results showed that the gut microbial diversity and cellulose digestibility across life stages were dynamically changing. The species richness of gut bacteria was significantly higher in eggs than in larvae and imago, the species richness and cellulose digestibility of gut bacteria were significantly higher in early larvae (first and second instars) than in late larvae (third to fifth instars), and the diversity of gut bacteria and cellulose digestibility were significantly higher in imago than in late larvae. There is a correlation between the dynamics of gut bacterial communities and cellulose digestibility. Enterobacter, Lactococcus, and Pseudomonas are the most abundant genera throughout all life stages. Six strains of highly efficient cellulolytic bacteria were screened, which were dominant gut bacteria. Carboxymethyl cellulase activity (CMCA) and filter paper activity (FPA) experiments revealed that Pseudomonas had the highest cellulase enzyme activity. This study provides a new way for the screening of cellulolytic bacteria and lays the foundation for developing insects with significant biomass into cellulose-degrading bioreactors. IMPORTANCE Cellulose is the most abundant and cheapest renewable resource in nature, but its degradation is difficult, so finding efficient cellulose degradation methods is an urgent challenge. Locusta migratoria is a large group of agricultural pests, and the large number of microorganisms that inhabit their intestinal tracts play an important role in cellulose degradation. We analyzed the dynamics of Locusta migratoria gut microbial communities and cellulose digestibility using a combination of high-throughput sequencing technology and anthrone colorimetry. The results revealed that the gut microbial diversity and cellulose digestibility were dynamically changed at different life stages. In addition, we explored the intestinal bacterial community of Locusta migratoria across life stages and its correlation with cellulose digestibility. The dominant bacterial genera at different life stages of Locusta migratoria were uncovered and their carboxymethyl cellulase activity (CMCA) and filter paper activity (FPA) were determined. This study provides a new avenue for screening cellulolytic bacteria and lays the foundation for developing insects with significant biomass into cellulose-degrading bioreactors.
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Affiliation(s)
- Kai Li
- The Key Laboratory of Zoological Systematics and Application, School of Life Sciences, Institute of Life Sciences and Green Development, Hebei University, Baoding, China
| | - Wen-Jing Li
- The Key Laboratory of Zoological Systematics and Application, School of Life Sciences, Institute of Life Sciences and Green Development, Hebei University, Baoding, China
| | - Ke Liang
- The Key Laboratory of Zoological Systematics and Application, School of Life Sciences, Institute of Life Sciences and Green Development, Hebei University, Baoding, China
| | - Fei-Fei Li
- The Key Laboratory of Zoological Systematics and Application, School of Life Sciences, Institute of Life Sciences and Green Development, Hebei University, Baoding, China
| | - Guo-Qing Qin
- The Key Laboratory of Zoological Systematics and Application, School of Life Sciences, Institute of Life Sciences and Green Development, Hebei University, Baoding, China
| | - Jia-Hao Liu
- The Key Laboratory of Zoological Systematics and Application, School of Life Sciences, Institute of Life Sciences and Green Development, Hebei University, Baoding, China
| | - Yu-Long Zhang
- The Key Laboratory of Zoological Systematics and Application, School of Life Sciences, Institute of Life Sciences and Green Development, Hebei University, Baoding, China
| | - Xin-Jiang Li
- The Key Laboratory of Zoological Systematics and Application, School of Life Sciences, Institute of Life Sciences and Green Development, Hebei University, Baoding, China
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Brulé L, Misery B, Baudouin G, Yan X, Guidou C, Trespeuch C, Foltyn C, Anthoine V, Moriceau N, Federighi M, Boué G. Evaluation of the Microbial Quality of Hermetia illucens Larvae for Animal Feed and Human Consumption: Study of Different Type of Rearing Substrates. Foods 2024; 13:1587. [PMID: 38790886 PMCID: PMC11120926 DOI: 10.3390/foods13101587] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2024] [Revised: 04/17/2024] [Accepted: 04/25/2024] [Indexed: 05/26/2024] Open
Abstract
In the context of climate change and depletion of natural resources, meeting the growing demand for animal feed and human food through sufficient, nutritious, safe, and affordable sources of protein is becoming a priority. The use of Hermetia illucens, the black soldier fly (BSF), has emerged as a strategy to enhance the circularity of the agri-food chain, but its microbiological safety remains a concern. The aim of the present study was to systematically review available data on the microbiological quality of BSF and to investigate the impact of using four different rearing substrates including classic options allowed by the EU regulation (cereals, fruits, vegetables) and options not allowed by EU regulations regarding vegetable agri-food (co-products, food at shelf life, and meat). A total of 13 studies were collected and synthesized, including 910 sample results, while 102 new sample results were collected from the present experiments in three farms. Both datasets combined revealed a high level of contamination of larvae, potentially transmitted through the substrate. The main pathogenic bacteria identified were Bacillus cereus, Clostridium perfringens, Cronobacter spp., Escherichia coli, Salmonella spp., and Staphylococcus aureus coagulase-positive, while Campylobacter spp. and Listeria monocytogenes were not detected. Any of these four substrates were excluded for their use in insect rearing; however, safety concerns were confirmed and must be managed by the operators of the sector using microbial inactivation treatment after the harvest of the larvae in order to propose safe products for the market. The results obtained will guide the definition of the control criteria and optimize the following manufacturing steps.
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Affiliation(s)
- Lenaïg Brulé
- Oniris, Institut National de Recherche Pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), SECurité des ALIments et Microbiologie (SECALIM), 44300 Nantes, France; (L.B.); (B.M.); (X.Y.); (C.F.); (V.A.); (N.M.)
| | - Boris Misery
- Oniris, Institut National de Recherche Pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), SECurité des ALIments et Microbiologie (SECALIM), 44300 Nantes, France; (L.B.); (B.M.); (X.Y.); (C.F.); (V.A.); (N.M.)
| | - Guillaume Baudouin
- Cycle Farms, 6 Boulevard des Entrepreneurs, 49250 Beaufort en Anjou, France;
| | - Xin Yan
- Oniris, Institut National de Recherche Pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), SECurité des ALIments et Microbiologie (SECALIM), 44300 Nantes, France; (L.B.); (B.M.); (X.Y.); (C.F.); (V.A.); (N.M.)
| | - Côme Guidou
- MUTATEC—1998, Chemin du Mitan, 84300 Cavaillon, France; (C.G.); (C.T.)
| | | | - Camille Foltyn
- Oniris, Institut National de Recherche Pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), SECurité des ALIments et Microbiologie (SECALIM), 44300 Nantes, France; (L.B.); (B.M.); (X.Y.); (C.F.); (V.A.); (N.M.)
| | - Valérie Anthoine
- Oniris, Institut National de Recherche Pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), SECurité des ALIments et Microbiologie (SECALIM), 44300 Nantes, France; (L.B.); (B.M.); (X.Y.); (C.F.); (V.A.); (N.M.)
| | - Nicolas Moriceau
- Oniris, Institut National de Recherche Pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), SECurité des ALIments et Microbiologie (SECALIM), 44300 Nantes, France; (L.B.); (B.M.); (X.Y.); (C.F.); (V.A.); (N.M.)
| | - Michel Federighi
- EnvA/Anses, Laboratoire de Sécurité des Aliments, 94700 Maisons-Alfort, France;
| | - Géraldine Boué
- Oniris, Institut National de Recherche Pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), SECurité des ALIments et Microbiologie (SECALIM), 44300 Nantes, France; (L.B.); (B.M.); (X.Y.); (C.F.); (V.A.); (N.M.)
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Li D, Wang L, Wang L, Gou Y, Luo B, Yan R, Liu H. The species and abundance of gut bacteria both positively impact Phortica okadai behavior. Parasit Vectors 2024; 17:217. [PMID: 38734668 PMCID: PMC11088764 DOI: 10.1186/s13071-024-06297-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2024] [Accepted: 04/22/2024] [Indexed: 05/13/2024] Open
Abstract
BACKGROUND Gut bacteria, which serve as essential modulators, exert a significant impact on insect physiology and behavior and have substantial application potential in pest management. The dynamics of gut bacteria and their impact on Phortica okadai behavior remain unclear. METHODS In this study, the dynamics of gut bacteria at different developmental stages in P. okadai were analyzed using 16S ribosomal RNA (rRNA) gene sequencing, and the species and abundance of gut bacteria that affect host behavior were examined via behavioral experiments. RESULTS A total of 19 phyla, 29 classes, 74 orders, 101 species, and 169 genera were identified. The results of the behavioral experiments indicated that the species Lactiplantibacillus argentoratensis, Acetobacter tropicalis, Leuconostoc citreum, and Levilactobacillus brevis effectively influenced the feeding preference of P. okadai, and the single-bacterium-seeded P. okadai exhibited feeding preferences distinct from those of the germ-free (GF) and wild-type P. okadai. CONCLUSIONS The species and relative abundance of gut bacteria together positively impact P. okadai behavior. Lactiplantibacillus argentoratensis, as the most attractive bacteria to P. okadai, presents opportunities for novel pest control strategies targeting this vector and agricultural pest.
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Affiliation(s)
- Di Li
- Department of Parasitology, Zunyi Medical University, Zunyi, 563000, China
| | - Lingjun Wang
- Department of Parasitology, Zunyi Medical University, Zunyi, 563000, China
- NHC Key Laboratory of Parasite and Vector Biology, National Institute of Parasitic Diseases, Chinese Center for Disease Control and Prevention, Shanghai, 200025, China
| | - Liang Wang
- Department of Parasitology, Zunyi Medical University, Zunyi, 563000, China
| | - Yanting Gou
- Department of Parasitology, Zunyi Medical University, Zunyi, 563000, China
| | - Bo Luo
- Department of Parasitology, Zunyi Medical University, Zunyi, 563000, China
| | - Rong Yan
- Department of Parasitology, Zunyi Medical University, Zunyi, 563000, China
| | - Hui Liu
- Department of Parasitology, Zunyi Medical University, Zunyi, 563000, China.
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Mazel F, Pitteloud C, Guisan A, Pellissier L. Contrasted host specificity of gut and endosymbiont bacterial communities in alpine grasshoppers and crickets. ISME COMMUNICATIONS 2024; 4:ycad013. [PMID: 38374896 PMCID: PMC10875604 DOI: 10.1093/ismeco/ycad013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/11/2023] [Revised: 12/18/2023] [Accepted: 12/19/2023] [Indexed: 02/21/2024]
Abstract
Bacteria colonize the body of macroorganisms to form associations ranging from parasitic to mutualistic. Endosymbiont and gut symbiont communities are distinct microbiomes whose compositions are influenced by host ecology and evolution. Although the composition of horizontally acquired symbiont communities can correlate to host species identity (i.e. harbor host specificity) and host phylogeny (i.e. harbor phylosymbiosis), we hypothesize that the microbiota structure of vertically inherited symbionts (e.g. endosymbionts like Wolbachia) is more strongly associated with the host species identity and phylogeny than horizontally acquired symbionts (e.g. most gut symbionts). Here, using 16S metabarcoding on 336 guts from 24 orthopteran species (grasshoppers and crickets) in the Alps, we observed that microbiota correlated to host species identity, i.e. hosts from the same species had more similar microbiota than hosts from different species. This effect was ~5 times stronger for endosymbionts than for putative gut symbionts. Although elevation correlated with microbiome composition, we did not detect phylosymbiosis for endosymbionts and putative gut symbionts: closely related host species did not harbor more similar microbiota than distantly related species. Our findings indicate that gut microbiota of studied orthopteran species is more correlated to host identity and habitat than to the host phylogeny. The higher host specificity in endosymbionts corroborates the idea that-everything else being equal-vertically transmitted microbes harbor stronger host specificity signal, but the absence of phylosymbiosis suggests that host specificity changes quickly on evolutionary time scales.
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Affiliation(s)
- Florent Mazel
- Department of Ecology and Evolution, University of Lausanne, Lausanne 1015, Switzerland
| | - Camille Pitteloud
- Département de la mobilité, du territoire et de l'environnement, Service des forêts, de la nature et du paysage, Sion 1950, Switzerland
- Ecosystems and Landscape Evolution, Department of Environmental Systems Science, ETH Zürich, Zürich 8092, Switzerland
- Swiss Federal Research Institute WSL, Birmensdorf 8903, Switzerland
| | - Antoine Guisan
- Department of Ecology and Evolution, University of Lausanne, Lausanne 1015, Switzerland
- Institute of Earth Surface Dynamics, University of Lausanne, Lausanne 1015, Switzerland
| | - Loïc Pellissier
- Ecosystems and Landscape Evolution, Department of Environmental Systems Science, ETH Zürich, Zürich 8092, Switzerland
- Swiss Federal Research Institute WSL, Birmensdorf 8903, Switzerland
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5
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Moldovan OT, Carrell AA, Bulzu PA, Levei E, Bucur R, Sitar C, Faur L, Mirea IC, Șenilă M, Cadar O, Podar M. The gut microbiome mediates adaptation to scarce food in Coleoptera. ENVIRONMENTAL MICROBIOME 2023; 18:80. [PMID: 37957741 PMCID: PMC10644639 DOI: 10.1186/s40793-023-00537-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2023] [Accepted: 11/06/2023] [Indexed: 11/15/2023]
Abstract
Beetles are ubiquitous cave invertebrates worldwide that adapted to scarce subterranean resources when they colonized caves. Here, we investigated the potential role of gut microbiota in the adaptation of beetles to caves from different climatic regions of the Carpathians. The beetles' microbiota was host-specific, reflecting phylogenetic and nutritional adaptation. The microbial community structure further resolved conspecific beetles by caves suggesting microbiota-host coevolution and influences by local environmental factors. The detritivore species hosted a variety of bacteria known to decompose and ferment organic matter, suggesting turnover and host cooperative digestion of the sedimentary microbiota and allochthonous-derived nutrients. The cave Carabidae, with strong mandibula, adapted to predation and scavenging of animal and plant remains, had distinct microbiota dominated by symbiotic lineages Spiroplasma or Wolbachia. All beetles had relatively high levels of fermentative Carnobacterium and Vagococcus involved in lipid accumulation and a reduction of metabolic activity, and both features characterize adaptation to caves.
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Affiliation(s)
- Oana Teodora Moldovan
- Cluj-Napoca Department, Emil Racovita Institute of Speleology, Clinicilor 5, Cluj- Napoca, 400006, Romania.
- Romanian Institute of Science and Technology, V. Fulicea 3, Cluj-Napoca, 400022, Romania.
- Centro Nacional de Investigación sobre la Evolución Humana, CENIEH, Paseo Sierra de Atapuerca 3, Burgos, 09002, Spain.
| | - Alyssa A Carrell
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Paul-Adrian Bulzu
- Department of Aquatic Microbial Ecology, Institute of Hydrobiology, Biology Centre of the Academy of Sciences of the Czech Republic, České Budějovice, 370 05, Czech Republic
| | - Erika Levei
- Research Institute for Analytical Instrumentation subsidiary, National Institute of Research and Development for Optoelectronics INOE 2000, Donath 67, Cluj-Napoca, 400293, Romania
| | - Ruxandra Bucur
- Cluj-Napoca Department, Emil Racovita Institute of Speleology, Clinicilor 5, Cluj- Napoca, 400006, Romania
| | - Cristian Sitar
- Cluj-Napoca Department, Emil Racovita Institute of Speleology, Clinicilor 5, Cluj- Napoca, 400006, Romania
- Romanian Institute of Science and Technology, V. Fulicea 3, Cluj-Napoca, 400022, Romania
- Zoological Museum, Babeș Bolyai University, Clinicilor 5, Cluj-Napoca, 400006, Romania
| | - Luchiana Faur
- Romanian Institute of Science and Technology, V. Fulicea 3, Cluj-Napoca, 400022, Romania
- Department of Geospeleology and Paleontology, Emil Racovita Institute of Speleology, 13 Septembrie 13, Bucharest, 050711, Romania
| | - Ionuț Cornel Mirea
- Romanian Institute of Science and Technology, V. Fulicea 3, Cluj-Napoca, 400022, Romania
- Department of Geospeleology and Paleontology, Emil Racovita Institute of Speleology, 13 Septembrie 13, Bucharest, 050711, Romania
| | - Marin Șenilă
- Research Institute for Analytical Instrumentation subsidiary, National Institute of Research and Development for Optoelectronics INOE 2000, Donath 67, Cluj-Napoca, 400293, Romania
| | - Oana Cadar
- Research Institute for Analytical Instrumentation subsidiary, National Institute of Research and Development for Optoelectronics INOE 2000, Donath 67, Cluj-Napoca, 400293, Romania
| | - Mircea Podar
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
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Moldovan OT, Carrell AA, Bulzu PA, Levei E, Bucur R, Sitar C, Faur L, Mirea IC, Enilă M, Cadar O, Podar M. The gut microbiome mediates adaptation to scarce food in Coleoptera. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.05.12.540564. [PMID: 37214959 PMCID: PMC10197664 DOI: 10.1101/2023.05.12.540564] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Beetles are ubiquitous cave invertebrates worldwide that adapted to scarce subterranean resources when they colonized caves. Here, we investigated the potential role of gut microbiota in the adaptation of beetles to caves from different climatic regions of the Carpathians. The beetles' microbiota was host-specific, reflecting phylogenetic and nutritional adaptation. The microbial community structure further resolved conspecific beetles by caves suggesting microbiota-host coevolution and influences by local environmental factors. The detritivore species hosted a variety of bacteria known to decompose and ferment organic matter, suggesting turnover and host cooperative digestion of the sedimentary microbiota and allochthonous-derived nutrients. The cave Carabidae, with strong mandibulae adapted to predation and scavenging of animal and plant remains, had distinct microbiota dominated by symbiotic lineages Spiroplasma or Wolbachia . All beetles had relatively high levels of fermentative Carnobacterium and Vagococcus involved in lipid accumulation and a reduction of metabolic activity, and both features characterize adaptation to caves.
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7
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Liu K, Chen Q, Huang GH. An Efficient Feature Selection Algorithm for Gene Families Using NMF and ReliefF. Genes (Basel) 2023; 14:421. [PMID: 36833348 PMCID: PMC9957060 DOI: 10.3390/genes14020421] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2022] [Revised: 01/24/2023] [Accepted: 01/25/2023] [Indexed: 02/10/2023] Open
Abstract
Gene families, which are parts of a genome's information storage hierarchy, play a significant role in the development and diversity of multicellular organisms. Several studies have focused on the characteristics of gene families, such as function, homology, or phenotype. However, statistical and correlation analyses on the distribution of gene family members in the genome have yet to be conducted. Here, a novel framework incorporating gene family analysis and genome selection based on NMF-ReliefF is reported. Specifically, the proposed method starts by obtaining gene families from the TreeFam database and determining the number of gene families within the feature matrix. Then, NMF-ReliefF is used to select features from the gene feature matrix, which is a new feature selection algorithm that overcomes the inefficiencies of traditional methods. Finally, a support vector machine is utilized to classify the acquired features. The results show that the framework achieved an accuracy of 89.1% and an AUC of 0.919 on the insect genome test set. We also employed four microarray gene data sets to evaluate the performance of the NMF-ReliefF algorithm. The outcomes show that the proposed method may strike a delicate balance between robustness and discrimination. Additionally, the proposed method's categorization is superior to state-of-the-art feature selection approaches.
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Affiliation(s)
- Kai Liu
- College of Plant Protection, Hunan Agricultural University, Changsha 410128, China
- Hunan Provincial Key Laboratory for Biology and Control of Plant Diseases and Insect Pests, Hunan Agricultural University, Nongda Road, Furong District, Changsha 410128, China
- College of Information and Intelligence, Hunan Agricultural University, Changsha 410128, China
| | - Qi Chen
- College of Plant Protection, Hunan Agricultural University, Changsha 410128, China
- Hunan Provincial Key Laboratory for Biology and Control of Plant Diseases and Insect Pests, Hunan Agricultural University, Nongda Road, Furong District, Changsha 410128, China
| | - Guo-Hua Huang
- College of Plant Protection, Hunan Agricultural University, Changsha 410128, China
- Hunan Provincial Key Laboratory for Biology and Control of Plant Diseases and Insect Pests, Hunan Agricultural University, Nongda Road, Furong District, Changsha 410128, China
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Kumar V, Tyagi I, Patidar A, Singha D, Tyagi K. Gut bacterial diversity on the basis of feeding behaviour in different species of thrips (Thysanoptera). JOURNAL OF TAIBAH UNIVERSITY FOR SCIENCE 2022. [DOI: 10.1080/16583655.2022.2123208] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
Affiliation(s)
- Vikas Kumar
- Centre for DNA Taxonomy, Molecular Systematics Division, Zoological Survey of India, Kolkata, India
| | - Inderjeet Tyagi
- Centre for DNA Taxonomy, Molecular Systematics Division, Zoological Survey of India, Kolkata, India
| | - Abhishek Patidar
- Centre for DNA Taxonomy, Molecular Systematics Division, Zoological Survey of India, Kolkata, India
- Department of Zoology, University of Calcutta, Kolkata, India
| | - Devkant Singha
- Centre for DNA Taxonomy, Molecular Systematics Division, Zoological Survey of India, Kolkata, India
| | - Kaomud Tyagi
- Centre for DNA Taxonomy, Molecular Systematics Division, Zoological Survey of India, Kolkata, India
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9
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Dong Y, Chen Q, Fang Z, Wu Q, Xiang L, Niu X, Liu Q, Tan L, Weng Q. Gut bacteria reflect the adaptation of Diestrammena japanica (Orthoptera: Rhaphidophoridae) to the cave. Front Microbiol 2022; 13:1016608. [PMID: 36620011 PMCID: PMC9812492 DOI: 10.3389/fmicb.2022.1016608] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2022] [Accepted: 11/18/2022] [Indexed: 12/24/2022] Open
Abstract
The gut microbiota is essential for the nutrition, growth, and adaptation of the host. Diestrammena japanica, a scavenger that provides energy to the cave ecosystem, is a keystone species in the karst cave in China. It inhabits every region of the cave, regardless of the amount of light. However, its morphology is dependent on the intensity of light. Whether the gut bacteria reflect its adaptation to the cave environment remains unknown. In this research, D. japanica was collected from the light region, weak light region, and dark region of three karst caves. The gut bacterial features of these individuals, including composition, diversity, potential metabolism function, and the co-occurrence network of their gut microbiota, were investigated based on 16S rRNA gene deep sequencing assay. The residues of amino acids in the ingluvies were also evaluated. In addition, we explored the contribution of gut bacteria to the cave adaptation of D. japanica from three various light zones. Findings showed that gut bacteria were made up of 245 operational taxonomic units (OTUs) from nine phyla, with Firmicutes being the most common phylum. Although the composition and diversity of the gut bacterial community of D. japanica were not significantly different among the three light regions, bacterial groups may serve different functions for D. japanica in differing light strengths. D. japanica has a lower rate of metabolism in cave habitats than in light regions. We infer that the majority of gut bacteria are likely engaged in nutrition and supplied D. japanica with essential amino acids. In addition, gut bacteria may play a role in adapting D. japanica's body size. Unveiling the features of the gut bacterial community of D. japanica would shed light on exploring the roles of gut bacteria in adapting hosts to karst cave environments.
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Affiliation(s)
- Yiyi Dong
- School of Life Sciences, Guizhou Normal University, Guiyang, Guizhou, China
| | - Qianquan Chen
- School of Life Sciences, Guizhou Normal University, Guiyang, Guizhou, China
| | - Zheng Fang
- School of Life Sciences, Guizhou Normal University, Guiyang, Guizhou, China
| | - Qingshan Wu
- School of Life Sciences, Guizhou Normal University, Guiyang, Guizhou, China
| | - Lan Xiang
- Qiannan Normal University for Nationalities, Duyun, Guizhou, China
| | - Xiaojuan Niu
- School of Life Sciences, Guizhou Normal University, Guiyang, Guizhou, China
| | - Qiuping Liu
- School of Life Sciences, Guizhou Normal University, Guiyang, Guizhou, China
| | - Leitao Tan
- School of Life Sciences, Guizhou Normal University, Guiyang, Guizhou, China
| | - Qingbei Weng
- School of Life Sciences, Guizhou Normal University, Guiyang, Guizhou, China
- Qiannan Normal University for Nationalities, Duyun, Guizhou, China
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10
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Ling Y, Li WJ, Li FF, Xue XB, Gao YY, Wang L, Liang K, Li XJ. Microbial gut diversity in four grasshopper species and its correlation with cellulose digestibility. Front Microbiol 2022; 13:1002532. [PMID: 36439812 PMCID: PMC9684308 DOI: 10.3389/fmicb.2022.1002532] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2022] [Accepted: 10/25/2022] [Indexed: 01/10/2024] Open
Abstract
Grasshoppers are common pests, and their intestinal microbes have coevolved with them. These microorganisms have varied community structures, and they participate in the nutritional absorption and metabolism of grasshoppers. Here, we describe the gut microbiota diversity of four species of grasshoppers, Oxya chinensis, Pararcyptera microptera meridionalis, Gastrimargus marmoratus, and Calliptamus abbreviatus. We constructed a 16S rDNA gene library and analyzed the digestibility of cellulose and hemicellulose in grasshoppers using moss black phenol and anthrone colorimetry. The grasshopper with the highest microbial diversity in the gut among the four species was Oxya chinensis, and there were no significant differences in gut microbial diversity between the two geographic collections of Oxya chinensis. The most dominant phyla of the four grasshopper gut microorganisms were Proteobacteria, Bacteroidetes, and Firmicutes, and the most dominant genus was Enterobacter. The gut microbiota features of the four grasshoppers were correlated with their cellulose and hemicellulose digestibility. There was a significant positive correlation with cellulose digestibility for Pantoea. A significant negative correlation was found with cellulose digestibility for Acinetobacter, Enterococcus, Citrobacter, Serratia. A significant negative correlation was found with hemicellulose digestibility for Pantoea. This study contributes to the understanding of the structural composition of different species of grasshoppers gut microbiota, which may be useful for developing grasshopper digestive tracts as bioreactors for cellulose decomposition, improving the decomposition and utilization of agricultural straw, producing clean biomass energy, and processing biologically derived products.
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Affiliation(s)
| | | | | | | | | | | | | | - Xin-Jiang Li
- The Key Laboratory of Zoological Systematics and Application, School of Life Sciences, Institute of Life Sciences and Green Development, Hebei University, Baoding, China
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Zheng X, Zhu Q, Qin M, Zhou Z, Liu C, Wang L, Shi F. The Role of Feeding Characteristics in Shaping Gut Microbiota Composition and Function of Ensifera (Orthoptera). INSECTS 2022; 13:719. [PMID: 36005344 PMCID: PMC9409189 DOI: 10.3390/insects13080719] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/20/2022] [Revised: 08/03/2022] [Accepted: 08/08/2022] [Indexed: 06/15/2023]
Abstract
Feeding habits were the primary factor affecting the gut bacterial communities in Ensifera. However, the interaction mechanism between the gut microbiota and feeding characteristics is not precisely understood. Here, the gut microbiota of Ensifera with diverse feeding habits was analyzed by shotgun metagenomic sequencing to further clarify the composition and function of the gut microbiota and its relationship with feeding characteristics. Our results indicate that under the influence of feeding habits, the gut microbial communities of Ensifera showed specific characteristics. Firstly, the gut microbial communities of the Ensifera with different feeding habits differed significantly, among which the gut microbial diversity of the herbivorous Mecopoda niponensis was the highest. Secondly, the functional genes related to feeding habits were in high abundance. Thirdly, the specific function of the gut microbial species in the omnivorous Gryllotalpa orientalis showed that the more diverse the feeding behavior of Ensifera, the worse the functional specificity related to the feeding characteristics of its gut microbiota. However, feeding habits were not the only factors affecting the gut microbiota of Ensifera. Some microorganisms' genes, whose functions were unrelated to feeding characteristics but were relevant to energy acquisition and nutrient absorption, were detected in high abundance. Our results were the first to report on the composition and function of the gut microbiota of Ensifera based on shotgun metagenomic sequencing and to explore the potential mechanism of the gut microbiota's association with diverse feeding habits.
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Affiliation(s)
- Xiang Zheng
- Key Laboratory of Zoological Systematics and Application of Hebei Province, College of Life Sciences, Hebei University, Baoding 071002, China
- Laboratory of Enzyme Preparation, Hebei Research Institute of Microbiology Co., Ltd., Baoding 071051, China
| | - Qidi Zhu
- Key Laboratory of Zoological Systematics and Application of Hebei Province, College of Life Sciences, Hebei University, Baoding 071002, China
| | - Meng Qin
- Laboratory of Enzyme Preparation, Hebei Research Institute of Microbiology Co., Ltd., Baoding 071051, China
- College of Life Sciences, Hebei Agricultural University, Baoding 071001, China
| | - Zhijun Zhou
- Key Laboratory of Zoological Systematics and Application of Hebei Province, College of Life Sciences, Hebei University, Baoding 071002, China
| | - Chunmao Liu
- Laboratory of Enzyme Preparation, Hebei Research Institute of Microbiology Co., Ltd., Baoding 071051, China
| | - Liyuan Wang
- Laboratory of Enzyme Preparation, Hebei Research Institute of Microbiology Co., Ltd., Baoding 071051, China
| | - Fuming Shi
- Key Laboratory of Zoological Systematics and Application of Hebei Province, College of Life Sciences, Hebei University, Baoding 071002, China
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Zhou Z, Huang H, Che X. Bacterial Communities in the Feces of Laboratory Reared Gampsocleis gratiosa (Orthoptera: Tettigoniidae) across Different Developmental Stages and Sexes. INSECTS 2022; 13:insects13040361. [PMID: 35447806 PMCID: PMC9024567 DOI: 10.3390/insects13040361] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/05/2022] [Revised: 04/05/2022] [Accepted: 04/06/2022] [Indexed: 12/10/2022]
Abstract
Simple Summary Many insects host a diverse gut microbial community, ranging from pathogenic to obligate mutualistic organisms. Little is known about the bacteria associated with katydids. Gampsocleis gratiosa (Orthoptera, Tettigoniidae) is an economically important singing pet in China. In the present study, the bacterial communities of the laboratory-reared G. gratiosa feces were characterized using Illumina sequencing of the 16S rDNA V3-V4 region. Abstract We used Illumina sequencing of the 16S rDNA V3-V4 region to identify the bacterial community in laboratory-reared G. gratiosa feces across different developmental stages (1st–7th instar nymph day 0, and 0-, 7-, 14-, and 21-day adult) and sexes. In total, 14,480,559 high-quality reads were clustered into 2982 species-level operational taxonomic units (OTUs), with an average of 481.197 (±137.366) OTUs per sample. These OTUs were assigned into 25 phyla, 42 classes, 60 orders, 116 families, 241 genera, and some unclassified groups. Only 21 core OTUs were shared by all samples. The most representative phylum was Proteobacteria, followed by Firmicutes, Bacteroidetes, and Acidobacteria. At the genus level, Kluyvera (387 OTUs), Obesumbacterium (339 OTUs), Buttiauxella (296 OTUs), Lactobacillus (286 OTUs), and Hafnia (152 OTUs) were dominant bacteria. The early-instar nymphs harbored a similar bacterial community with other developmental stages, which contain higher species diversity. Both principal coordinate analysis (PCoA) and non-metric multidimensional scaling analysis (NMDS) failed to provide a clear clustering based on the developmental stages and sexes. Overall, we assume that G. gratiosa transmits bacteria vertically by eating contaminated eggshells, and both developmental stages and sexes had no significant effect on the fecal bacterial community.
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Affiliation(s)
- Zhijun Zhou
- Key Laboratory of Zoological Systematics and Application of Hebei Province, College of Life Sciences, Hebei University, Baoding 071002, China; (H.H.); (X.C.)
- Institute of Life Science and Green Development, Hebei University, Baoding 071002, China
- Correspondence:
| | - Huimin Huang
- Key Laboratory of Zoological Systematics and Application of Hebei Province, College of Life Sciences, Hebei University, Baoding 071002, China; (H.H.); (X.C.)
| | - Xuting Che
- Key Laboratory of Zoological Systematics and Application of Hebei Province, College of Life Sciences, Hebei University, Baoding 071002, China; (H.H.); (X.C.)
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