1
|
Caesar L, Rice DW, McAfee A, Underwood R, Ganote C, Tarpy DR, Foster LJ, Newton ILG. Metagenomic analysis of the honey bee queen microbiome reveals low bacterial diversity and Caudoviricetes phages. mSystems 2024; 9:e0118223. [PMID: 38259099 PMCID: PMC10878037 DOI: 10.1128/msystems.01182-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2023] [Accepted: 12/11/2023] [Indexed: 01/24/2024] Open
Abstract
In eusocial insects, the health of the queens-the colony founders and sole reproductive females-is a primary determinant for colony success. Queen failure in the honey bee Apis mellifera, for example, is a major concern of beekeepers who annually suffer colony losses, necessitating a greater knowledge of queen health. Several studies on the microbiome of honey bees have characterized its diversity and shown its importance for the health of worker bees, the female non-reproductive caste. However, the microbiome of workers differs from that of queens, which, in comparison, is still poorly studied. Thus, direct investigations of the queen microbiome are required to understand colony-level microbiome assembly, functional roles, and evolution. Here, we used metagenomics to comprehensively characterize the honey bee queen microbiome. Comparing samples from different geographic locations and breeder sources, we show that the microbiome of queens is mostly shaped by the environment experienced since early life and is predicted to play roles in the breakdown of the diet and protection from pathogens and xenobiotics. We also reveal that the microbiome of queens comprises only four candidate core bacterial species, Apilactobacillus kunkeei, Lactobacillus apis, Bombella apis, and Commensalibacter sp. Interestingly, in addition to bacteria, we show that bacteriophages infect the queen microbiome, for which Lactobacillaceae are predicted to be the main reservoirs. Together, our results provide the basis to understand the honey bee colony microbiome assemblage, can guide improvements in queen-rearing processes, and highlight the importance of considering bacteriophages for queen microbiome health and microbiome homeostasis in eusocial insects.IMPORTANCEThe queen caste plays a central role in colony success in eusocial insects, as queens lay eggs and regulate colony behavior and development. Queen failure can cause colonies to collapse, which is one of the major concerns of beekeepers. Thus, understanding the biology behind the queen's health is a pressing issue. Previous studies have shown that the bee microbiome plays an important role in worker bee health, but little is known about the queen microbiome and its function in vivo. Here, we characterized the queen microbiome, identifying for the first time the present species and their putative functions. We show that the queen microbiome has predicted nutritional and protective roles in queen association and comprises only four consistently present bacterial species. Additionally, we bring to attention the spread of phages in the queen microbiome, which increased in abundance in failing queens and may impact the fate of the colony.
Collapse
Affiliation(s)
- Lílian Caesar
- Department of Biology, Indiana University, Bloomington, Indiana, USA
| | - Danny W. Rice
- Department of Biology, Indiana University, Bloomington, Indiana, USA
| | - Alison McAfee
- Department of Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, Vancouver, British Columbia, Canada
- Department of Applied Ecology, North Carolina State University, Raleigh, North Carolina, USA
| | - Robyn Underwood
- Department of Entomology, Pennsylvania State University, University Park, State College, Pennsylvania, USA
| | - Carrie Ganote
- Luddy School of Informatics, Indiana University, Bloomington, Indiana, USA
| | - David R. Tarpy
- Department of Applied Ecology, North Carolina State University, Raleigh, North Carolina, USA
| | - Leonard J. Foster
- Department of Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, Vancouver, British Columbia, Canada
| | | |
Collapse
|
2
|
Abou-Shaara HF. The response of heat shock proteins in honey bees to abiotic and biotic stressors. J Therm Biol 2024; 119:103784. [PMID: 38232472 DOI: 10.1016/j.jtherbio.2024.103784] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2023] [Revised: 01/01/2024] [Accepted: 01/03/2024] [Indexed: 01/19/2024]
Abstract
Honey bees, Apis mellifera, are the most important managed pollinators worldwide. They are highly impacted by various abiotic and biotic stressors, especially temperature extremes, which can lead to cellular damage and death. The induction of heat shock proteins (HSPs) has been recorded in honey bees as a response to various types of stressors. HSPs are classified into different gene families according to their molecular weights. HSPs play an important role in maintaining cellular protein homeostasis due to their contribution as molecular chaperones or co-chaperones. HSPs in honey bees have complex functions with induction even under normal colony conditions. Previous studies have suggested various functions of HSPs to protect cells from damage under exposure to environmental stressors, pollutants, and pathogens. Surprisingly, HSPs have also been found to play roles in larval development and age-related tasks. The expression of HSPs varies depending on tissue type, developmental stage, age, and stress period. This article reviews studies on HSPs (sHSPs, HSP40, HSP60, HSP70, and HSP90) in honey bees and highlights gaps in the available knowledge. This review is crucial for honey bee research, particularly in the face of climate change challenges.
Collapse
Affiliation(s)
- Hossam F Abou-Shaara
- Department of Plant Protection, Faculty of Agriculture, Damanhour University, Damanhour, 22516, Egypt.
| |
Collapse
|
3
|
Skinnider MA, Akinlaja MO, Foster LJ. Mapping protein states and interactions across the tree of life with co-fractionation mass spectrometry. Nat Commun 2023; 14:8365. [PMID: 38102123 PMCID: PMC10724252 DOI: 10.1038/s41467-023-44139-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2023] [Accepted: 12/01/2023] [Indexed: 12/17/2023] Open
Abstract
We present CFdb, a harmonized resource of interaction proteomics data from 411 co-fractionation mass spectrometry (CF-MS) datasets spanning 21,703 fractions. Meta-analysis of this resource charts protein abundance, phosphorylation, and interactions throughout the tree of life, including a reference map of the human interactome. We show how large-scale CF-MS data can enhance analyses of individual CF-MS datasets, and exemplify this strategy by mapping the honey bee interactome.
Collapse
Affiliation(s)
- Michael A Skinnider
- Michael Smith Laboratories, University of British Columbia, Vancouver, BC, Canada
- Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA
- Ludwig Institute for Cancer Research, Princeton University, Princeton, NJ, USA
| | - Mopelola O Akinlaja
- Michael Smith Laboratories, University of British Columbia, Vancouver, BC, Canada
- Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, BC, Canada
| | - Leonard J Foster
- Michael Smith Laboratories, University of British Columbia, Vancouver, BC, Canada.
- Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, BC, Canada.
| |
Collapse
|
4
|
Holmes LA, Ovinge LP, Kearns JD, Ibrahim A, Wolf Veiga P, Guarna MM, Pernal SF, Hoover SE. Queen quality, performance, and winter survival of imported and domestic honey bee queen stocks. Sci Rep 2023; 13:17273. [PMID: 37828046 PMCID: PMC10570385 DOI: 10.1038/s41598-023-44298-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2023] [Accepted: 10/05/2023] [Indexed: 10/14/2023] Open
Abstract
Canadian beekeepers have faced high colony mortality each winter over the last decade. Frequently citing "poor queen quality" as a top contributing factor to colony loss, Canadian beekeepers report needing to replace half their queens each year. Domestic queen production exists throughout Canada but is limited due to the short season and can be further limited when colony mortality is high. Consequently, Canadian beekeepers import over 260,000 queens annually, primarily from locations with warmer climates. In this study, newly mated imported queens from Hawaii (USA) and New Zealand were compared to domestic Canadian queens produced in British Columbia; these stocks were evaluated on their morphological and sperm storage characteristics. Stock quality was also evaluated in the field at two locations in Alberta, Canada over two production seasons. Our results show initial variation in queen morphology and fertility among imported and domestic queen stocks. Most striking, the New Zealand queens weighed 10-13% less than the Hawaii and British Columbia queens, respectively upon arrival. Colony performance over a two-year field study suggests: (1) brood pattern solidness has a positive nonlinear correlation with honey production regardless of queen stock and environment; (2) environment (i.e., apiary location) and queen stock variably predict colony health and productivity depending on year; specifically, apiary site appears to be a stronger predictor of colony health and productivity than queen stock in year one, but in year two, queen stock appears to be a stronger predictor than apiary site; (3) high clinical symptoms of chalkbrood may explain the prevalence of poor brood patterns in colonies headed by queens from New Zealand; (4) domestic queens are 25% more likely to survive winter in Alberta than imported queens. Therefore, it is important to consider possible mismatches in disease immunity and climate conditioning of imported queen stocks heading colonies in temperate regions that face drastically different seasonal climates and disease ecology dynamics.
Collapse
Affiliation(s)
- L A Holmes
- Department of Biological Sciences, University of Lethbridge, Lethbridge, AB, Canada.
| | - L P Ovinge
- Alberta Beekeepers Commission, Edmonton, AB, Canada
| | - J D Kearns
- Department of Biological Sciences, University of Lethbridge, Lethbridge, AB, Canada
| | - A Ibrahim
- Agriculture and Agri-Food Canada, Beaverlodge Research Farm, Beaverlodge, AB, Canada
| | - P Wolf Veiga
- National Bee Diagnostics Centre, Northwestern Polytechnic, Beaverlodge, AB, Canada
| | - M M Guarna
- Agriculture and Agri-Food Canada, Beaverlodge Research Farm, Beaverlodge, AB, Canada
| | - S F Pernal
- Agriculture and Agri-Food Canada, Beaverlodge Research Farm, Beaverlodge, AB, Canada
| | - S E Hoover
- Department of Biological Sciences, University of Lethbridge, Lethbridge, AB, Canada
| |
Collapse
|
5
|
McAfee A, Metz BN, Milone JP, Foster LJ, Tarpy DR. Drone honey bees are disproportionately sensitive to abiotic stressors despite expressing high levels of stress response proteins. Commun Biol 2022; 5:141. [PMID: 35177754 PMCID: PMC8854713 DOI: 10.1038/s42003-022-03092-7] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2021] [Accepted: 02/01/2022] [Indexed: 12/21/2022] Open
Abstract
Drone honey bees (Apis mellifera) are the obligate sexual partners of queens, and the availability of healthy, high-quality drones directly affects a queen's fertility and productivity. Yet, our understanding of how stressors affect adult drone fertility, survival, and physiology is presently limited. Here, we investigated sex biases in susceptibility to abiotic stressors (cold stress, topical imidacloprid exposure, and topical exposure to a realistic cocktail of pesticides). We found that drones (haploid males) were more sensitive to cold and imidacloprid exposure than workers (sterile, diploid females), but the cocktail was not toxic at the concentrations tested. We corroborated this lack of cocktail toxicity with in-hive exposures via pollen feeding. We then used quantitative proteomics to investigate protein expression profiles in the hemolymph of topically exposed workers and drones, and found that 34 proteins were differentially expressed in exposed drones relative to controls, but none were differentially expressed in exposed workers. Contrary to our hypothesis, we show that drones express surprisingly high baseline levels of putative stress response proteins relative to workers. This suggests that drones' stress tolerance systems are fundamentally rewired relative to workers, and susceptibility to stress depends on more than simply gene dose or allelic diversity.
Collapse
Affiliation(s)
- Alison McAfee
- Department of Entomology & Plant Pathology, North Carolina State University, Raleigh, NC, 27695, USA.
- Department of Applied Ecology (current), North Carolina State University, Raleigh, NC, 27695-7617, USA.
- Department of Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, Vancouver, BC, V6T1Z4, Canada.
| | - Bradley N Metz
- Department of Entomology & Plant Pathology, North Carolina State University, Raleigh, NC, 27695, USA.
- Department of Applied Ecology (current), North Carolina State University, Raleigh, NC, 27695-7617, USA.
| | - Joseph P Milone
- Department of Entomology & Plant Pathology, North Carolina State University, Raleigh, NC, 27695, USA
| | - Leonard J Foster
- Department of Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, Vancouver, BC, V6T1Z4, Canada
| | - David R Tarpy
- Department of Entomology & Plant Pathology, North Carolina State University, Raleigh, NC, 27695, USA
- Department of Applied Ecology (current), North Carolina State University, Raleigh, NC, 27695-7617, USA
| |
Collapse
|