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Rheindt FE, Bouchard P, Pyle RL, Welter-Schultes F, Aescht E, Ahyong ST, Ballerio A, Bourgoin T, Ceríaco LMP, Dmitriev D, Evenhuis N, Grygier MJ, Harvey MS, Kottelat M, Kluge N, Krell FT, Kojima JI, Kullander SO, Lucinda P, Lyal CHC, Scioscia CL, Whitmore D, Yanega D, Zhang ZQ, Zhou HZ, Pape T. Tightening the requirements for species diagnoses would help integrate DNA-based descriptions in taxonomic practice. PLoS Biol 2023; 21:e3002251. [PMID: 37607211 PMCID: PMC10443861 DOI: 10.1371/journal.pbio.3002251] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/24/2023] Open
Abstract
Modern advances in DNA sequencing hold the promise of facilitating descriptions of new organisms at ever finer precision but have come with challenges as the major Codes of bionomenclature contain poorly defined requirements for species and subspecies diagnoses (henceforth, species diagnoses), which is particularly problematic for DNA-based taxonomy. We, the commissioners of the International Commission on Zoological Nomenclature, advocate a tightening of the definition of "species diagnosis" in future editions of Codes of bionomenclature, for example, through the introduction of requirements for specific information on the character states of differentiating traits in comparison with similar species. Such new provisions would enhance taxonomic standards and ensure that all diagnoses, including DNA-based ones, contain adequate taxonomic context. Our recommendations are intended to spur discussion among biologists, as broad community consensus is critical ahead of the implementation of new editions of the International Code of Zoological Nomenclature and other Codes of bionomenclature.
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Affiliation(s)
- Frank E. Rheindt
- National University of Singapore, Department of Biological Sciences, Singapore
| | - Patrice Bouchard
- Canadian National Collection of Insects, Arachnids and Nematodes, Agriculture and Agri-Food Canada, Ottawa, Ontario, Canada
| | - Richard L. Pyle
- Department of Natural Sciences, Bernice Pauahi Bishop Museum, Honolulu, Hawaii, United States of America
| | - Francisco Welter-Schultes
- Abteilung Evolution und Biodiversität der Tiere und Zoologisches Museum, Universität Göttingen, Göttingen, Germany
| | - Erna Aescht
- Biology Centre of the Upper Austrian Museum, Linz, Austria
| | - Shane T. Ahyong
- Australian Museum, Sydney, Australia
- School of Biological, Earth and Environmental Sciences, University of New South Wales, Kensington, Australia
| | | | - Thierry Bourgoin
- Institut Systématique, Evolution, Biodiversité (ISYEB), MNHN-CNRS-Sorbonne Université-EPHE- Université des Antilles, Museum National d’Histoire Naturelle, Paris, France
| | - Luis M. P. Ceríaco
- Departamento de Vertebrados, Museu Nacional, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
| | - Dmitry Dmitriev
- Illinois Natural History Survey, University of Illinois at Urbana-Champaign, Champaign, Illinois, United States of America
| | - Neal Evenhuis
- Department of Natural Sciences, Bernice Pauahi Bishop Museum, Honolulu, Hawaii, United States of America
| | - Mark J. Grygier
- National Museum of Marine Biology and Aquarium, Checheng, Taiwan
| | - Mark S. Harvey
- Department of Terrestrial Zoology, Western Australian Museum, Welshpool DC, Australia
| | | | - Nikita Kluge
- Department of Entomology, Saint-Petersburg State University, Saint Petersburg, Russia
| | - Frank-T. Krell
- Denver Museum of Nature and Science, Denver, Colorado, United States of America
| | - Jun-ichi Kojima
- Natural History Laboratory, Faculty of Science, Ibaraki University, Mito, Japan
| | - Sven O. Kullander
- Department of Zoology, Swedish Museum of Natural History, Stockholm, Sweden
| | - Paulo Lucinda
- Laboratório de Ictiologia Sistemática, Universidade Federal do Tocantins, Tocantins, Brazil
| | | | - Cristina Luisa Scioscia
- Arachnology Division, Museo Argentino de Ciencias Naturales ‘Bernardino Rivadavia’, Buenos Aires, Argentina
| | - Daniel Whitmore
- Staatliches Museum für Naturkunde Stuttgart, Stuttgart, Germany
| | - Douglas Yanega
- Department of Entomology, University of California, Riverside, Riverside, California, United States of America
| | - Zhi-Qiang Zhang
- Manaaki Whenua–Landcare Research, Auckland, New Zealand
- School of Biological Sciences, University of Auckland, Auckland, New Zealand
| | - Hong-Zhang Zhou
- Institute of Zoology, Chinese Academy of Sciences, Beijing, People’s Republic of China
| | - Thomas Pape
- Zoological Museum, Natural History Museum of Denmark, Copenhagen, Denmark
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Lhoumeau S, Cardoso P, Boieiro M, Ros-Prieto A, Costa R, Lamelas-Lopez L, Leite A, Amorim do Rosário I, Gabriel R, Malumbres-Olarte J, Rigal F, Santos AMC, Tsafack N, Ferreira MT, Borges PAV. SLAM Project - Long Term Ecological Study of the Impacts of Climate Change in the natural forests of Azores: V - New records of terrestrial arthropods after ten years of SLAM sampling. Biodivers Data J 2022; 10:e97952. [PMID: 36761538 PMCID: PMC9836448 DOI: 10.3897/bdj.10.e97952] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2022] [Accepted: 12/08/2022] [Indexed: 12/15/2022] Open
Abstract
Background A long-term study monitoring arthropods (Arthropoda) is being conducted since 2012 in the forests of Azorean Islands. Named "SLAM - Long Term Ecological Study of the Impacts of Climate Change in the natural forest of Azores", this project aims to understand the impact of biodiversity erosion drivers in the distribution, abundance and diversity of Azorean arthropods. The current dataset represents arthropods that have been recorded using a total of 42 passive SLAM traps (Sea, Land and Air Malaise) deployed in native, mixed and exotic forest fragments in seven Azorean Islands (Flores, Faial, Pico, Graciosa, Terceira, São Miguel and Santa Maria). This manuscript is the fifth data-paper contribution, based on data from this long-term monitoring project. New information We targeted taxa for species identification belonging to Arachnida (excluding Acari), Chilopoda, Diplopoda, Hexapoda (excluding Collembola, Lepidoptera, Diptera and Hymenoptera (but including only Formicidae)). Specimens were sampled over seven Azorean Islands during the 2012-2021 period. Spiders (Araneae) data from Pico and Terceira Islands are not included since they have been already published elsewhere (Costa and Borges 2021, Lhoumeau et al. 2022). We collected a total of 176007 specimens, of which 168565 (95.7%) were identified to the species or subspecies level. For Araneae and some Hemiptera species, juveniles are also included in this paper, since the low diversity in the Azores allows a relatively precise species-level identification of this life-stage. We recorded a total of 316 named species and subspecies, belonging to 25 orders, 106 families and 260 genera. The ten most abundant species were mostly endemic or native non-endemic (one Opiliones, one Archaeognatha and seven Hemiptera) and only one exotic species, the Julida Ommatoiulusmoreleti (Lucas, 1860). These ten species represent 107330 individuals (60%) of all sampled specimens and can be considered as the dominant species in the Azorean native forests for the target studied taxa. The Hemiptera were the most abundant taxa, with 90127 (50.4%) specimens. The Coleoptera were the most diverse with 30 (28.6%) families.We registered 72 new records for many of the islands (two for Flores, eight for Faial, 24 for Graciosa, 23 for Pico, eight for Terceira, three for São Miguel and four for Santa Maria). These records represent 58 species. None of them is new to the Azores Archipelago. Most of the new records are introduced species, all still with low abundance on the studied islands. This publication contributes to increasing the baseline information for future long-term comparisons of the arthropods of the studied sites and the knowledge of the arthropod fauna of the native forests of the Azores, in terms of species abundance, distribution and diversity throughout seasons and years.
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Affiliation(s)
- Sébastien Lhoumeau
- cE3c- Centre for Ecology, Evolution and Environmental Changes, Azorean Biodiversity Group, CHANGE – Global Change and Sustainability Institute, Faculty of Agricultural Sciences and Environment, University of the Azores, Rua Capitão João d´Ávila, Pico da Urze, 9700-042, Angra do Heroísmo, Azores, PortugalcE3c- Centre for Ecology, Evolution and Environmental Changes, Azorean Biodiversity Group, CHANGE – Global Change and Sustainability Institute, Faculty of Agricultural Sciences and Environment, University of the Azores, Rua Capitão João d´Ávila, Pico da Urze, 9700-042Angra do Heroísmo, AzoresPortugal
| | - Pedro Cardoso
- cE3c- Centre for Ecology, Evolution and Environmental Changes, Azorean Biodiversity Group, CHANGE – Global Change and Sustainability Institute, Faculty of Agricultural Sciences and Environment, University of the Azores, Rua Capitão João d´Ávila, Pico da Urze, 9700-042, Angra do Heroísmo, Azores, PortugalcE3c- Centre for Ecology, Evolution and Environmental Changes, Azorean Biodiversity Group, CHANGE – Global Change and Sustainability Institute, Faculty of Agricultural Sciences and Environment, University of the Azores, Rua Capitão João d´Ávila, Pico da Urze, 9700-042Angra do Heroísmo, AzoresPortugal
- LIBRe – Laboratory for Integrative Biodiversity Research, Finnish Museum of Natural History, University of Helsinki, P.O.Box 17 (Pohjoinen Rautatiekatu 13), 00014, Helsinki, FinlandLIBRe – Laboratory for Integrative Biodiversity Research, Finnish Museum of Natural History, University of Helsinki, P.O.Box 17 (Pohjoinen Rautatiekatu 13), 00014HelsinkiFinland
- IUCN SSC Mid-Atlantic Islands Invertebrates Specialist Group, Angra do Heroísmo, Azores, PortugalIUCN SSC Mid-Atlantic Islands Invertebrates Specialist GroupAngra do Heroísmo, AzoresPortugal
| | - Mário Boieiro
- cE3c- Centre for Ecology, Evolution and Environmental Changes, Azorean Biodiversity Group, CHANGE – Global Change and Sustainability Institute, Faculty of Agricultural Sciences and Environment, University of the Azores, Rua Capitão João d´Ávila, Pico da Urze, 9700-042, Angra do Heroísmo, Azores, PortugalcE3c- Centre for Ecology, Evolution and Environmental Changes, Azorean Biodiversity Group, CHANGE – Global Change and Sustainability Institute, Faculty of Agricultural Sciences and Environment, University of the Azores, Rua Capitão João d´Ávila, Pico da Urze, 9700-042Angra do Heroísmo, AzoresPortugal
- IUCN SSC Mid-Atlantic Islands Invertebrates Specialist Group, Angra do Heroísmo, Azores, PortugalIUCN SSC Mid-Atlantic Islands Invertebrates Specialist GroupAngra do Heroísmo, AzoresPortugal
| | - Alejandra Ros-Prieto
- cE3c- Centre for Ecology, Evolution and Environmental Changes, Azorean Biodiversity Group, CHANGE – Global Change and Sustainability Institute, Faculty of Agricultural Sciences and Environment, University of the Azores, Rua Capitão João d´Ávila, Pico da Urze, 9700-042, Angra do Heroísmo, Azores, PortugalcE3c- Centre for Ecology, Evolution and Environmental Changes, Azorean Biodiversity Group, CHANGE – Global Change and Sustainability Institute, Faculty of Agricultural Sciences and Environment, University of the Azores, Rua Capitão João d´Ávila, Pico da Urze, 9700-042Angra do Heroísmo, AzoresPortugal
| | - Ricardo Costa
- cE3c- Centre for Ecology, Evolution and Environmental Changes, Azorean Biodiversity Group, CHANGE – Global Change and Sustainability Institute, Faculty of Agricultural Sciences and Environment, University of the Azores, Rua Capitão João d´Ávila, Pico da Urze, 9700-042, Angra do Heroísmo, Azores, PortugalcE3c- Centre for Ecology, Evolution and Environmental Changes, Azorean Biodiversity Group, CHANGE – Global Change and Sustainability Institute, Faculty of Agricultural Sciences and Environment, University of the Azores, Rua Capitão João d´Ávila, Pico da Urze, 9700-042Angra do Heroísmo, AzoresPortugal
| | - Lucas Lamelas-Lopez
- cE3c- Centre for Ecology, Evolution and Environmental Changes, Azorean Biodiversity Group, CHANGE – Global Change and Sustainability Institute, Faculty of Agricultural Sciences and Environment, University of the Azores, Rua Capitão João d´Ávila, Pico da Urze, 9700-042, Angra do Heroísmo, Azores, PortugalcE3c- Centre for Ecology, Evolution and Environmental Changes, Azorean Biodiversity Group, CHANGE – Global Change and Sustainability Institute, Faculty of Agricultural Sciences and Environment, University of the Azores, Rua Capitão João d´Ávila, Pico da Urze, 9700-042Angra do Heroísmo, AzoresPortugal
| | - Abrão Leite
- cE3c- Centre for Ecology, Evolution and Environmental Changes, Azorean Biodiversity Group, CHANGE – Global Change and Sustainability Institute, Faculty of Agricultural Sciences and Environment, University of the Azores, Rua Capitão João d´Ávila, Pico da Urze, 9700-042, Angra do Heroísmo, Azores, PortugalcE3c- Centre for Ecology, Evolution and Environmental Changes, Azorean Biodiversity Group, CHANGE – Global Change and Sustainability Institute, Faculty of Agricultural Sciences and Environment, University of the Azores, Rua Capitão João d´Ávila, Pico da Urze, 9700-042Angra do Heroísmo, AzoresPortugal
| | - Isabel Amorim do Rosário
- cE3c- Centre for Ecology, Evolution and Environmental Changes, Azorean Biodiversity Group, CHANGE – Global Change and Sustainability Institute, Faculty of Agricultural Sciences and Environment, University of the Azores, Rua Capitão João d´Ávila, Pico da Urze, 9700-042, Angra do Heroísmo, Azores, PortugalcE3c- Centre for Ecology, Evolution and Environmental Changes, Azorean Biodiversity Group, CHANGE – Global Change and Sustainability Institute, Faculty of Agricultural Sciences and Environment, University of the Azores, Rua Capitão João d´Ávila, Pico da Urze, 9700-042Angra do Heroísmo, AzoresPortugal
- IUCN SSC Mid-Atlantic Islands Invertebrates Specialist Group, Angra do Heroísmo, Azores, PortugalIUCN SSC Mid-Atlantic Islands Invertebrates Specialist GroupAngra do Heroísmo, AzoresPortugal
| | - Rosalina Gabriel
- cE3c- Centre for Ecology, Evolution and Environmental Changes, Azorean Biodiversity Group, CHANGE – Global Change and Sustainability Institute, Faculty of Agricultural Sciences and Environment, University of the Azores, Rua Capitão João d´Ávila, Pico da Urze, 9700-042, Angra do Heroísmo, Azores, PortugalcE3c- Centre for Ecology, Evolution and Environmental Changes, Azorean Biodiversity Group, CHANGE – Global Change and Sustainability Institute, Faculty of Agricultural Sciences and Environment, University of the Azores, Rua Capitão João d´Ávila, Pico da Urze, 9700-042Angra do Heroísmo, AzoresPortugal
- IUCN SSC Mid-Atlantic Islands Invertebrates Specialist Group, Angra do Heroísmo, Azores, PortugalIUCN SSC Mid-Atlantic Islands Invertebrates Specialist GroupAngra do Heroísmo, AzoresPortugal
| | - Jagoba Malumbres-Olarte
- cE3c- Centre for Ecology, Evolution and Environmental Changes, Azorean Biodiversity Group, CHANGE – Global Change and Sustainability Institute, Faculty of Agricultural Sciences and Environment, University of the Azores, Rua Capitão João d´Ávila, Pico da Urze, 9700-042, Angra do Heroísmo, Azores, PortugalcE3c- Centre for Ecology, Evolution and Environmental Changes, Azorean Biodiversity Group, CHANGE – Global Change and Sustainability Institute, Faculty of Agricultural Sciences and Environment, University of the Azores, Rua Capitão João d´Ávila, Pico da Urze, 9700-042Angra do Heroísmo, AzoresPortugal
- LIBRe – Laboratory for Integrative Biodiversity Research, Finnish Museum of Natural History, University of Helsinki, P.O.Box 17 (Pohjoinen Rautatiekatu 13), 00014, Helsinki, FinlandLIBRe – Laboratory for Integrative Biodiversity Research, Finnish Museum of Natural History, University of Helsinki, P.O.Box 17 (Pohjoinen Rautatiekatu 13), 00014HelsinkiFinland
| | - François Rigal
- cE3c- Centre for Ecology, Evolution and Environmental Changes, Azorean Biodiversity Group, CHANGE – Global Change and Sustainability Institute, Faculty of Agricultural Sciences and Environment, University of the Azores, Rua Capitão João d´Ávila, Pico da Urze, 9700-042, Angra do Heroísmo, Azores, PortugalcE3c- Centre for Ecology, Evolution and Environmental Changes, Azorean Biodiversity Group, CHANGE – Global Change and Sustainability Institute, Faculty of Agricultural Sciences and Environment, University of the Azores, Rua Capitão João d´Ávila, Pico da Urze, 9700-042Angra do Heroísmo, AzoresPortugal
- Institut Des Sciences Analytiques et de Physico Chimie pour L’environnement et les Materiaux UMR5254, Comité National de la Recherche Scientifique - University de Pau et des Pays de l’Adour - E2S UPPA, Pau Cedex 64013, FranceInstitut Des Sciences Analytiques et de Physico Chimie pour L’environnement et les Materiaux UMR5254, Comité National de la Recherche Scientifique - University de Pau et des Pays de l’Adour - E2S UPPAPau Cedex 64013France
| | - Ana M. C. Santos
- cE3c- Centre for Ecology, Evolution and Environmental Changes, Azorean Biodiversity Group, CHANGE – Global Change and Sustainability Institute, Faculty of Agricultural Sciences and Environment, University of the Azores, Rua Capitão João d´Ávila, Pico da Urze, 9700-042, Angra do Heroísmo, Azores, PortugalcE3c- Centre for Ecology, Evolution and Environmental Changes, Azorean Biodiversity Group, CHANGE – Global Change and Sustainability Institute, Faculty of Agricultural Sciences and Environment, University of the Azores, Rua Capitão João d´Ávila, Pico da Urze, 9700-042Angra do Heroísmo, AzoresPortugal
- Terrestrial Ecology Group (TEG-UAM), Departamento de Ecología, Universidad Autónoma de Madrid, 28049, Madrid, PortugalTerrestrial Ecology Group (TEG-UAM), Departamento de Ecología, Universidad Autónoma de Madrid, 28049MadridPortugal
- Centro de Investigación en Biodiversidad y Cambio Global (CIBC-UAM), Universidad Autónoma de Madrid, 28049, Madrid, PortugalCentro de Investigación en Biodiversidad y Cambio Global (CIBC-UAM), Universidad Autónoma de Madrid, 28049MadridPortugal
| | - Noelline Tsafack
- cE3c- Centre for Ecology, Evolution and Environmental Changes, Azorean Biodiversity Group, CHANGE – Global Change and Sustainability Institute, Faculty of Agricultural Sciences and Environment, University of the Azores, Rua Capitão João d´Ávila, Pico da Urze, 9700-042, Angra do Heroísmo, Azores, PortugalcE3c- Centre for Ecology, Evolution and Environmental Changes, Azorean Biodiversity Group, CHANGE – Global Change and Sustainability Institute, Faculty of Agricultural Sciences and Environment, University of the Azores, Rua Capitão João d´Ávila, Pico da Urze, 9700-042Angra do Heroísmo, AzoresPortugal
- Regional Secretariat of Environment and Climate Change, Project LIFE BEETLES (LIFE 18NAT/PT/000864), Rua do Galo n118, 9700-040, Angra do Heroísmo, Azores, PortugalRegional Secretariat of Environment and Climate Change, Project LIFE BEETLES (LIFE 18NAT/PT/000864), Rua do Galo n118, 9700-040Angra do Heroísmo, AzoresPortugal
| | - Maria Teresa Ferreira
- Regional Secretariat of Environment and Climate Change, Project LIFE BEETLES (LIFE 18NAT/PT/000864), Rua do Galo n118, 9700-040, Angra do Heroísmo, Azores, PortugalRegional Secretariat of Environment and Climate Change, Project LIFE BEETLES (LIFE 18NAT/PT/000864), Rua do Galo n118, 9700-040Angra do Heroísmo, AzoresPortugal
| | - Paulo A. V. Borges
- cE3c- Centre for Ecology, Evolution and Environmental Changes, Azorean Biodiversity Group, CHANGE – Global Change and Sustainability Institute, Faculty of Agricultural Sciences and Environment, University of the Azores, Rua Capitão João d´Ávila, Pico da Urze, 9700-042, Angra do Heroísmo, Azores, PortugalcE3c- Centre for Ecology, Evolution and Environmental Changes, Azorean Biodiversity Group, CHANGE – Global Change and Sustainability Institute, Faculty of Agricultural Sciences and Environment, University of the Azores, Rua Capitão João d´Ávila, Pico da Urze, 9700-042Angra do Heroísmo, AzoresPortugal
- IUCN SSC Mid-Atlantic Islands Invertebrates Specialist Group, Angra do Heroísmo, Azores, PortugalIUCN SSC Mid-Atlantic Islands Invertebrates Specialist GroupAngra do Heroísmo, AzoresPortugal
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