Theoretical Assessment of the Ligand/Metal/Quadruplex Recognition in the Non-Canonical Nucleic Acids Structures

Quadruplexes (GQs), peculiar DNA/RNA motifs concentrated in specific genomic regions, play a vital role in biological processes including telomere stability and, hence, represent promising targets for anticancer therapy. GQs are formed by folding guanine-rich sequences into square planar G-tetrads which stack onto one another. Metal cations, most often potassium, further stabilize the architecture by coordinating the lone electron pairs of the O atoms. The presence of additional nucleic acid bases, however, has been recently observed experimentally and contributes substantially to the structural heterogeneity of quadruplexes. Therefore, it is of paramount significance to understand the factors governing the underlying complex processes in these structures. The current study employs DFT calculations to model the interactions between metal cations (K+, Na+, Sr2+) and diverse tetrads composed of a guanine layer in combination with a guanine (G)-, adenine (A)-, cytosine (C)-, thymine (T)-, or uracil (U)-based tetrad layer. Moreover, the addition of 4-(3,4-dihydroisoquinolin-2-yl)-2-(quinolin-2-yl)quinazoline to the modeled quadruplexes as a possible mechanism of its well-exerted antitumor effect is assessed. The calculations imply that the metal cation competition and ligand complexation are influenced by the balance between electronic and implicit/explicit solvation effects, the composition of the tetrad layers, as well as by the solvent exposure to the surrounding environment expressed in terms of different dielectric constant values. The provided results significantly enhance our understanding of quadruplex diversity, ligand recognition, and the underlying mechanisms of stabilization at an atomic level.

Hemocompatibility of cellulose phosphate aerogel membranes with potential use in bone tissue engineering

Cellulose is an appealing material for tissue engineering. In an attempt to overcome some obstacles with cellulose II cell scaffolding materials related to insufficient biomineralization, lack of micron-size porosity, and deficiency in surface charge, respective solutions have been proposed. These included covalent phosphorylation of different cellulose materials targeting relatively low degrees of substitution (DS 0.18-0.23) and processing these cellulose derivatives into scaffolding materials by a dissolution/coagulation approach employing the hitherto rarely used TBAF/DMSO/H₂O system for cellulose dissolution. Here, we report bioactivity and preliminary hemocompatibility testing of dual-porous cellulose phosphate aerogels (contrasted with the phosphate-free reference) obtained via coagulation (water/ethanol), solvent exchange and scCO₂ drying. Deposition of hydroxyapatite from simulated body fluid (7 days of immersion) revealed good bioactivity (1.5-2.2 mg Ca²⁺ per mg scaffold). Incubation of the scCO₂-dried and rehydrated scaffolding materials in heparin anticoagulated human whole blood was conducted to study selected parameters of hemostasis (prothrombin F1+2 fragment, PF4, count of thrombocyte-leukocyte conjugates) and inflammatory response (C5a fragment, leukocyte activation marker CD11b). Adhesion of leukocytes on the surface of the incubated substrates was assessed by scanning electron and fluorescence microscopy (DAPI staining). The results suggest that phosphorylation at low DS does not increase platelet activation. However, a significant increase in platelet activation and thrombin formation was observed after a certain fraction of the negative surface charges had been compensated by Ca²⁺ ions. The combination of both phosphorylation and calcification turned out to be a potent means for controlling the inflammatory response, which was close to baseline level for some of the studied samples.

Synthesis, Characterization, and Application of Magnetized Lanthanum (III)-Based Metal-Organic Framework for the Organic Dye Removal from Water

A hybrid composite based on metal-organic framework (MOF) was chemically fabricated by embedding the magnetic Fe3O4 nanoparticles within amino-functionalized porous La-MOF (MOF/NH2) to produce a highly efficient and reusable composite of MOF/NH2/Fe3O4. Different proper techniques were used for the characterization of surface morphology and chemical arrangement of the prepared MOF/NH2/Fe3O4 composite. The characterization results using various techniques including Fourier transform infrared spectroscopy (FT-IR), X-ray diffraction (XRD), scanning electron microscope (SEM), Brunauer, Emmett, and Teller analysis (BET), and vibrating sample magnetometer (VSM) approved the successful fabrication of MOF with amino arms on its surface besides the well magnetization using magnetic nanoparticles. The MOF/NH2/Fe3O4 composite showed enhanced adsorption capacity (618 mg/g) toward methyl orange (MO) anionic dye which is higher than many commercial reported adsorbents due to the presence of many types of adsorption sites (NH2 groups and lanthanum sites), large surface area of MOF, and the synergetic effect of magnetic nanoparticles. Moreover, the MOF/NH2/Fe3O4 composite showed selective adsorption of MO dye from dye mixtures owing to the electrostatic attraction. Also, the MOF/NH2/Fe3O4 composite retained over 90% of its efficiency for the dye removal even after six successive cycles. So, the present study provided a practical strategy for the design of functional MOF hybrid composites. Furthermore, due to the adaptability of its architectural form, it is a potential adsorbent material for industrial wastewater treatment uses.

A state-of-the-art review on graphene-based nanomaterials to determine antibiotics by electrochemical techniques

Antibiotics might build up into the human body by foodstuff metabolism, posing a serious threat to human health and safety. Establishing simple and sensitive technology for quick antibiotic evaluation is thus extremely important. Nanomaterials (or NMTs) with the advantage of possessing merits such as remarkable optical, thermal, mechanical, and electrical capabilities have been highlighted as a piece of the best promising materials for rising new paths in the creation of the future generation biosensors. This paper presents the most recent advances in the use of graphene NMTs-based biosensors to determine antibiotics. Gr-NMTs (or graphene nanomaterials) have been used in the development of a biosensor for the electrochemical signal-transducing process. The rising issues and potential chances of this field are contained to give a plan for forthcoming research orientations. As a result, this review provides a comprehensive evaluation of the nanostructured electrochemical sensing approach for antibiotic residues in various systems. In this review, various electrochemical techniques such as CV, DPV, Stripping, EIS, LSV, chronoamperometry, SWV were employed to determine antibiotics. Additionally, this also demonstrates how graphene nanomaterials are employed to detect antibiotics.

The Biocatalytic Degradation of Organic Dyes Using Laccase Immobilized Magnetic Nanoparticles

Free laccase has limitations for its use in industrial applications that require laccase immobilization on proper support, to improve its catalytic activity. Herein, the nanoparticles of magnetic iron oxide (Fe3O4) and copper ferrite (CuFe2O4) were successfully used as support for the immobilization of free laccase, using glutaraldehyde as a cross-linker. The immobilization conditions of laccase on the surface of nanoparticles were optimized to reach the maximum activity of the immobilized enzyme. The synthesized free nanoparticles and the nanoparticle-immobilized laccase were characterized using different techniques, including X-ray diffraction (XRD), Fourier transform infrared spectroscopy (FT-IR), scanning electron microscope (SEM), vibrating sample magnetometer (VSM), and thermogravimetric analysis (TGA). CuFe2O4 nanoparticles, as support, enhanced laccase activity compared to free laccase and Fe3O4 nanoparticle-immobilized laccase that appeared during the study of pH, temperature, and storage stability on free and immobilized laccase. The CuFe2O4 and Fe3O4 nanoparticle-immobilized laccase showed superior activity in a wide pH range, temperature range, and storage period, up to 20 days at 4.0 °C, when compared to free laccase. Additionally, the synthesized nanobiocatalysts were examined and optimized for the biodegradation of the anionic dye Direct Red 23 (DR23). HPLC analysis was used to confirm the dye degradation. The reusability of immobilized laccases for the biodegradation of DR23 dye was investigated for up to six successive cycles, with a decolorization efficiency over 70.0%, which indicated good reusability and excellent stability.

Polyethylenimine-Modified Magnetic Chitosan for the Uptake of Arsenic from Water

The removal of heavy metals from water has become a global environmental problem. Various materials have been applied as adsorbent to remove metals from water. In this field, nanomaterials have been gaining increasing interest due to their exceptional properties. In this work, we discuss the synthesis of a core-shell structure nanocomposite by the modification of magnetic chitosan (CS) (Fe3O4/CS) with polyethylenimine (PEI) to produce Fe3O4/CS/PEI composite for the adsorption of arsenic ions (As(V) and As(III)) from aqueous solution. The synthesized materials were characterized using X-ray diffraction (XRD), Fourier-transform infrared spectroscopy (FT-IR), transmission electron microscope (TEM), and vibrating sample magnetometer (VSM). The results indicated the successful combination of three components of the nanocomposite. The adsorption conditions were optimized by studying the effect of different parameters included pH, contact time, initial concentration, and adsorbent dosage. The optimum adsorption pH was found to be 6.7 while the optimum adsorbent dosage was found to be 2.0 and 1.5 g/L for As(III) and As(V), respectively. The removal efficiency for the uptake of As(III) and As(V) ions over Fe3O4/CS/PEI nanocomposite at optimum conditions was found to be 99.5 and 99.7%, respectively. The experimental results were fitted using Freundlich’s and Langmuir’s isotherms. The data were more fitted to Langmuir isotherm providing a suggestion of monolayer adsorption with maximum adsorption capacity equal to 77.61 and 86.50 mg/g for the removal of As(III) and As(V), respectively. Moreover, linear regression coefficient (R2) indicated that the adsorption of arsenic ions over the synthesized magnetic nanocomposite obeyed pseudo 2nd order suggesting the chemisorption process. The reusability of the nanosorbent for arsenic uptake using sodium hydroxide as eluent was also assessed up to five cycles. Interestingly, Fe3O4/CS/PEI nanocomposite can be considered as a promising adsorbent for As ions’ removal from water and should be tested for the removal of other pollutants.

Partially Reduced Graphene Oxide Modified with Polyacrylonitrile for the Removal of Sm3+ from Water

An in situ emulsion polymerization method was used for the synthesis of polyacrylonitrile nanoparticles amino-functionalized partially reduced graphene oxide (PAN-PRGO). After that, hydrolyzed polyacrylonitrile nanoparticles amino-functionalized partially reduced graphene oxide (HPAN-PRGO) nanocomposite was achieved by the modification of nitrile groups of the composite polymer chains to carboxylic groups, aminoethylene diamine, and amidoxime functional groups through partial hydrolysis using a basic solution of sodium hydroxide for 20 min. Different synthesized materials were characterized and compared using well-known techniques including transmission electron microscope (TEM), scanning electron microscope (SEM), Fourier-transform infrared spectroscopy (FT-IR), Raman spectra, and X-ray diffraction (XRD). The nanocomposite was structured through the interaction between acrylonitrile’s (AN) nitrile groups and amino-functionalized graphene oxide nanosheets’ amino groups to successfully graft polyacrylonitrile over the surface of functionalized nanosheets as approved by characterization techniques. The synthesized composite was examined for the removal of samarium ions (Sm3+) from water. Different experimental conditions including pH, contact time, initial concentration, and adsorbent dose were investigated to determine the optimum conditions for the metal capture from water. The optimum conditions were found to be a contact time of 15 min, pH 6, and 0.01 g of adsorbent dosage. The experimental results found, in a good agreement with the Langmuir isotherm model, the maximum adsorption capacity of Sm3+ uptake was equal to 357 mg/g. A regeneration and reusability study of synthesized composite up to six cycles indicated the ability to use HPAN-PRGO nanocomposite several times for Sm3+ uptake. The obtained results prove that this polymer-based composite is a promising adsorbent for water treatment that must be studied for additional pollutants removal in the future.

Magnetic Metal Organic Framework Immobilized Laccase for Wastewater Decolorization

The laccase enzyme was successfully immobilized over a magnetic amino-functionalized metal–organic framework Fe3O4-NH2@MIL-101(Cr). Different techniques were used for the characterization of the synthesized materials. The Fe3O4-NH2@MIL-101(Cr) laccase showed excellent resistance to high temperatures and low pH levels with a high immobilization capacity and large activity recovery, due to the combination of covalent binding and adsorption advantages. The long-term storage of immobilized laccase for 28 days indicated a retention of 88% of its initial activity, due to the high stability of the immobilized system. Furthermore, a residual activity of 49% was observed at 85 °C. The immobilized laccase was effectively used for the biodegradation of Reactive Black 5 (RB) and Alizarin Red S (AR) dyes in water. The factors affecting the RB and AR degradation using the immobilized laccase (dye concentration, temperature and pH) were investigated to determine the optimum treatment conditions. The optimum conditions for dye removal were a 5 mg/L dye concentration, temperature of 25 °C, and a pH of 4. At the optimum conditions, the biodegradation and sorption-synergistic mechanism of the Fe3O4-NH2@MIL-101(Cr) laccase system caused the total removal of AR and 81% of the RB. Interestingly, the reusability study of this immobilized enzyme up to five cycles indicated the ability to reuse it several times for water treatment.

Synthesis of Manganese Ferrite/Graphene Oxide Magnetic Nanocomposite for Pollutants Removal from Water

These days, environmental pollution, notably water pollution, has increasingly caused severe human health problems. The major water pollutants are heavy metals. MnFe2O4/GO nanocomposite was prepared in the current work via in situ method and tested to remove lead ion Pb2+ and neutral red (NR) dye from water. The prepared nanocomposite was characterized using different techniques, including X-ray diffraction, transmission electron microscopy, Fourier transform infrared spectroscopy, scanning electron microscopy, X-ray photoelectron spectroscopy, Raman spectra, and vibrating sample magnetometer. The prepared nanocomposite showed high adsorption capacity toward Pb2+ and NR dye removal according to Langmuir fitting indicating the monolayer homogeneous adsorption of pollutants over the adsorbent surface and can be separated easily with an external magnet. The effect of different factors, including contact time, pH, initial concentration, and adsorbent dose on the adsorption, were also studied. The increased concentration of pollutants led to increased adsorption capacity from 63 to 625 mg/g for Pb2+ ions and from 20 to 90 mg/g for NR dye. The increased adsorbent dose led to increased removal efficiency from 39% to 98.8% and from 63% to 94% for Pb2+ and NR dye, respectively. The optimum pH for the adsorption of both pollutants was found to be 6.0. The reusability of MnFe2O4/GO nanocomposite was studied for up to five cycles. The nanocomposite can keep its efficiency even after the studied cycles. So, the prepared magnetic nanocomposite is a promising material for water treatment.

The Application of Nanomaterials for the Electrochemical Detection of Antibiotics: A Review

Antibiotics can accumulate through food metabolism in the human body which may have a significant effect on human safety and health. It is therefore highly beneficial to establish easy and sensitive approaches for rapid assessment of antibiotic amounts. In the development of next-generation biosensors, nanomaterials (NMs) with outstanding thermal, mechanical, optical, and electrical properties have been identified as one of the most hopeful materials for opening new gates. This study discusses the latest developments in the identification of antibiotics by nanomaterial-constructed biosensors. The construction of biosensors for electrochemical signal-transducing mechanisms has been utilized in various types of nanomaterials, including quantum dots (QDs), metal-organic frameworks (MOFs), magnetic nanoparticles (NPs), metal nanomaterials, and carbon nanomaterials. To provide an outline for future study directions, the existing problems and future opportunities in this area are also included. The current review, therefore, summarizes an in-depth assessment of the nanostructured electrochemical sensing method for residues of antibiotics in different systems.

Complexation of biologically essential (mono- and divalent) metal cations to cucurbiturils: a DFT/SMD evaluation of the key factors governing the host-guest recognition

Supramolecular complexes based on classical synthetic macrocyclic host molecules such as cyclodextrins and calixarenes have received much attention recently due to their broad applications as biological and chemical sensors, bioimaging agents, drug delivery carriers, light-emitting materials, etc. Cucurbit[n]urils comprise another group of cavitands known for their high affinity for various guest molecules. Nonetheless, some aspects of their coordination chemistry remain enigmatic. Although they are recognized as potential biomimetic scaffolds, they are still not tested as metalloenzyme models and not much is known about their metal-binding properties. Furthermore, there is no systematic study on the key factors controlling the processes of metal coordination to these systems. In the computational study herein, DFT molecular modeling has been employed in order to investigate the interactions of biologically essential (mono- and divalent) metal cations to cucurbit[n]urils and evaluate the major determinants shaping the process. The thermodynamic descriptors (Gibbs energies in the gas phase and in a water medium) of the corresponding complexation reactions have been estimated. The results obtained shed light on the mechanism of host-guest recognition and disclose which factors more specifically affect the metal binding process.

Effective Heavy Metals Removal from Water Using Nanomaterials: A Review

The discharge of toxic heavy metals including zinc (Zn), nickel (Ni), lead (Pb), copper (Cu), chromium (Cr), and cadmium (Cd) in water above the permissible limits causes high threat to the surrounding environment. Because of their toxicity, heavy metals greatly affect the human health and the environment. Recently, better remediation techniques were offered using the nanotechnology and nanomaterials. The attentions were directed toward cost-effective and new fabricated nanomaterials for the application in water/wastewater remediation, such as zeolite, carbonaceous, polymer based, chitosan, ferrite, magnetic, metal oxide, bimetallic, metallic, etc. This review focused on the synthesis and capacity of various nanoadsorbent materials for the elimination of different toxic ions, with discussion of the effect of their functionalization on the adsorption capacity and separation process. Additionally, the effect of various experimental physicochemical factors on heavy metals adsorption, such as ionic strength, initial ion concentration, temperature, contact time, adsorbent dose, and pH was discussed.