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Parlak C, Alver Ö, Bağlayan Ö, Ramasami P. Theoretical insights of the drug-drug interaction between favipiravir and ibuprofen: a DFT, QTAIM and drug-likeness investigation. J Biomol Struct Dyn 2022:1-8. [DOI: 10.1080/07391102.2022.2066022] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Cemal Parlak
- Department of Physics, Science Faculty, Ege University, Izmir, Turkey
| | - Özgür Alver
- Department of Physics, Science Faculty, Eskisehir Technical University, Eskisehir, Turkey
| | - Özge Bağlayan
- Department of Physics, Science Faculty, Eskisehir Technical University, Eskisehir, Turkey
| | - Ponnadurai Ramasami
- Computational Chemistry Group, Department of Chemistry, Faculty of Science, University of Mauritius, Réduit, Mauritius
- Department of Chemistry, College of Science, Engineering and Technology, University of South Africa, Pretoria, South Africa
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Korkmaz A, Rhyman L, Ramasami P. Synthesis, characterization, DFT and molecular docking studies of acetone O-((2,5-dichlorophenyl)sulfonyl) oxime. PHYSICAL SCIENCES REVIEWS 2022. [DOI: 10.1515/psr-2021-0230] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
Acetone O-((2,5-dichlorophenyl)sulfonyl) oxime was prepared from 2,5-dichlorophenylsulfonyl chloride and acetone oxime using triethylamine. The compound was characterized using 1H NMR and 13C NMR spectra. Molecular docking was performed with the compound and cholinesterase enzymes. The average affinity of the compound with the acetylcholinesterase and butyrylcholinesterase was calculated at −7.46 ± 0.14 and −6.70 ± 0.00 kcal/mol, respectively. The density functional theory method was also used to complement the experimental study. The findings of this work might be useful towards the applications of the compound studied.
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Affiliation(s)
- Adem Korkmaz
- Faculty of Health Science, MuşAlparslan University , Mush , Turkey
| | - Lydia Rhyman
- Department of Chemistry , Computational Chemistry Group, Faculty of Science, University of Mauritius , Reduit 80837 , Mauritius
- Department of Chemical Sciences , Center for Natural Product Research, University of Johannesburg, Doornfontein Campus , Johannesburg 2028 , South Africa
| | - Ponnadurai Ramasami
- Department of Chemistry , Computational Chemistry Group, Faculty of Science, University of Mauritius , Reduit 80837 , Mauritius
- Department of Chemical Sciences , Center for Natural Product Research, University of Johannesburg, Doornfontein Campus , Johannesburg 2028 , South Africa
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Tu Quy P, Thi Ai My T, Thi Thanh Hai N, Bui TQ, Tuan Quang D, Thanh Triet N, Phuoc Hien P, Thi Ai Nhung N. A Computational Screening on Inhibitability of Piper Betle Essential Oil Chemical Structures against Spike Proteins of Mutated SARS-CoV-2-variants D614G, N501Y, and S477N. SMART SCIENCE 2021. [DOI: 10.1080/23080477.2021.2003948] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Phan Tu Quy
- Department of Natural Sciences & Technology, Tay Nguyen University, Buon Ma Thuot, Vietnam
| | - Tran Thi Ai My
- Department of Chemistry, University of Sciences, Hue University, Hue, Vietnam
| | | | - Thanh Q. Bui
- Department of Chemistry, University of Sciences, Hue University, Hue, Vietnam
| | - Duong Tuan Quang
- Department of Chemistry, University of Education, Hue University, Hue, Vietnam
| | - Nguyen Thanh Triet
- Faculty of Traditional Medicine, University of Medicine and Pharmacy, Ho Chi Minh City, Vietnam
| | - Phan Phuoc Hien
- Institute of Applied Science and Technology, van Lang University, Ho Chi Minh City, Vietnam
| | - Nguyen Thi Ai Nhung
- Department of Chemistry, University of Sciences, Hue University, Hue, Vietnam
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Parlak C, Alver Ö, Ouma CNM, Rhyman L, Ramasami P. Can the Antivirals Remdesivir and Favipiravir Work Better Jointly? In Silico Insights. Drug Res (Stuttg) 2021; 72:34-40. [PMID: 34535038 DOI: 10.1055/a-1585-1323] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
The proverb "Old is gold" is applicable in drug discovery and the proverb "All that Glitters is not Gold" is also appropriate. In the COVID-19 era, there has been a race for drugs to be effective against SARS-CoV-2. There are reports about the uses of Remdesivir and Favipiravir as existing antivirals against virus but none have been conclusive so far. In the attempts for innovations, the combination of drugs is also under trials. Therefore, we used the density functional theory method and quantum theory of atoms in molecules to investigate drug-drug interactions involving Remdesivir and Favipiravir. The computed parameters were related to the antiviral actions of both drugs together. The results indicate enhanced antiviral activity and it will be worthy to consider additional investigations with the combination of these two drugs.
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Affiliation(s)
- Cemal Parlak
- Department of Physics, Science Faculty, Ege University, Izmir, Turkey
| | - Özgür Alver
- Department of Physics, Science Faculty, Eskisehir Technical University, Eskisehir, Turkey
| | - Cecil N M Ouma
- HySA-Infrastructure CoC, North-West University, Faculty of Engineering, Potchefstroom, South Africa
| | - Lydia Rhyman
- Computational Chemistry Group, Department of Chemistry, Faculty of Science, University of Mauritius, Réduit, Mauritius.,Centre for Natural Product Research, Department of Chemical Sciences, University of Johannesburg, Doornfontein Campus, Johannesburg, South Africa
| | - Ponnadurai Ramasami
- Computational Chemistry Group, Department of Chemistry, Faculty of Science, University of Mauritius, Réduit, Mauritius.,Centre for Natural Product Research, Department of Chemical Sciences, University of Johannesburg, Doornfontein Campus, Johannesburg, South Africa
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Yuksel N, Köse A, Fellah MF. The supramolecularly complexes of calix[4]arene derivatives toward favipiravir antiviral drug (used to treatment of COVID-19): a DFT study on the geometry optimization, electronic structure and infrared spectroscopy of adsorption and sensing. J INCL PHENOM MACRO 2021; 101:77-89. [PMID: 34121921 PMCID: PMC8179711 DOI: 10.1007/s10847-021-01087-1] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2020] [Accepted: 05/29/2021] [Indexed: 01/02/2023]
Abstract
While the world is in search of a vaccine that can cure COVID-19 disease, favipiravir is the most commonly used antiviral drug in the treatment of patients during the pandemic process. In this study, we investigated the host-guest interaction between the popular supramolecule calix[4]arene derivatives and the favipiravir drug by using the DFT (Density Functional Theory) method. The B3LYP hybrid method and 6-31G (d,p) basis set were utilized to determine the optimized structures of the host and guest molecules and their complexes. The negative adsorption energy (∆E) and adsorption enthalpy (∆H) calculated for the complexes formed between calix[4]arene compounds and favipiravir drug molecule mentioned that adsorption of favipiravir molecule was an exothermic process on calix[4]arene structures. On the other hand, among the calixarene derivatives in the study, Gibbs free energy change (∆G) value for the adsorption was only negative on calix[4]arene4 molecule. The infrared spectroscopy (IR) calculations were performed by examining the C=O, O-H and NH2 vibrational frequencies to see the adsorption behavior in the favipiravir-calix[4]arene complex. After adsorption of the favipiravir molecule, HOMO-LUMO gap values decreased significantly for the structures and therefore electrical conductivity increased proportionally. In addition, sensor response factors, Fermi energy levels and workfunction changes of calix[4]arene derivatives were calculated and examined. Charge transfer between the four calix[4]arene compounds and the favipiravir molecule has occurred after adsorption. This attributes that calix[4]arene derivatives can be used as a well-suited favipiravir sensor (electronic and workfunction) and adsorbent at room temperature. Based on the calculations made to see the solvent effect on the adsorption of favipiravir it was determined that it did not affect the interaction between the drug molecule and the calix[4]arene compound too much and the adsorption energy turned into a slightly less negative value.
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Affiliation(s)
- Numan Yuksel
- Department of Chemical Engineering, Bursa Technical University, Mimar Sinan Campus, 16310 Bursa, Turkey
| | - Ahmet Köse
- Department of Chemical Engineering, Bursa Technical University, Mimar Sinan Campus, 16310 Bursa, Turkey
| | - M. Ferdi Fellah
- Department of Chemical Engineering, Bursa Technical University, Mimar Sinan Campus, 16310 Bursa, Turkey
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