1
|
Tan SL, Cardoso LNF, de Souza MVN, Wardell SMSV, Wardell JL, Tiekink ERT. Experimental and computational evidence for stabilising parallel, offset π[C(O)N(H)NC]⋯π(phenyl) interactions in acetohydrazide derivatives. CrystEngComm 2022. [DOI: 10.1039/d1ce01492g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Stabilising π[C(O)N(H)NC]⋯π(phenyl) interactions are described.
Collapse
Affiliation(s)
- Sang Loon Tan
- Research Centre for Crystalline Materials, School of Medical and Life Sciences, Sunway University, 47500 Bandar Sunway, Selangor Darul Ehsan, Malaysia
| | - Laura N. F. Cardoso
- Instituto de Tecnologia em Fármacos Farmanguinhos, FIOCRUZ Fundação Oswaldo Cruz, Rio de Janeiro 21041-250, Brazil
| | - Marcus V. N. de Souza
- Instituto de Tecnologia em Fármacos Farmanguinhos, FIOCRUZ Fundação Oswaldo Cruz, Rio de Janeiro 21041-250, Brazil
| | | | - James L. Wardell
- Department of Chemistry, University of Aberdeen, Meston Walk, Old Aberdeen, AB24 3UE, Scotland, UK
| | - Edward R. T. Tiekink
- Research Centre for Crystalline Materials, School of Medical and Life Sciences, Sunway University, 47500 Bandar Sunway, Selangor Darul Ehsan, Malaysia
| |
Collapse
|
2
|
Yu H, Wang M. The crystal structure of N′-(2-chloro-6-hydroxybenzylidene)thiophene-2-carbohydrazide monohydrate, C12H11ClN2O3S. Z KRIST-NEW CRYST ST 2021. [DOI: 10.1515/ncrs-2021-0407] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
C12H11ClN2O3S, monoclinic, P21/n (no. 14), a = 4.7305(8) Å, b = 21.252(4) Å, c = 13.134(2) Å, β = 96.286(2)°, Z = 4, V = 1312.5(4) Å3, R
gt
(F) = 0.1002, wR
ref
(F
2) = 0.1118, T = 296 K.
Collapse
Affiliation(s)
- Haiyan Yu
- Henan Key Laboratory of Industrial Microbial Resources and Fermentation Technology , 473004 , Nanyang , Henan , People’s Republic of China
- School of Biological and Chemical Engineering , Nanyang Institute of Technology , 473004 , Nanyang , Henan , People’s Republic of China
| | - Meng Wang
- Department of Pharmacy , The Fourth Hospital of Shijiazhuang, Shijiazhuang Obstetrics and Gynecology Hospital , 050000 , Shijiazhuang , Hebei , People’s Republic of China
| |
Collapse
|
3
|
Cardoso LNF, Noguiera TCM, Wardell JL, de Souza MVN, Harrison WTA. Different packing motifs of isomeric ( E)- N'-(halo-phenyl-methyl-idene)- N-methyl-2-(thio-phen-2-yl)acetohydrazides controlled by C-H⋯O inter-actions. Acta Crystallogr E Crystallogr Commun 2018; 74:313-318. [PMID: 29765713 PMCID: PMC5947793 DOI: 10.1107/s2056989018001251] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2018] [Accepted: 01/19/2018] [Indexed: 11/29/2022]
Abstract
The crystal structures of three isomeric (E)-N'-(chloro-phenyl-methyl-idene)-N-methyl-2-(thio-phen-2-yl)acetohydrazides (C14H13ClN2OS) are described, with the Cl atom in ortho (I), meta (III) and para (IV) positions in the benzene ring. The ortho-bromo derivative (II) (C14H13BrN2OS), which is isostructural with its chloro congener (I), is also reported. Mol-ecules (I)-(III) have similar conformations, which approximate to l-shapes, as indicated by their N-C-C-Ct (t = thio-phene) torsion angles of -90.1 (3), -91.44 (18) and -90.7 (9)°, respectively. The conformation of (IV) is different, with an equivalent torsion angle of -170.75 (11)° corresponding to a more extended shape for the mol-ecule. The thio-phene ring in each structure features 'flip' rotational disorder. The packing for (I) and (II) features inversion dimers, linked by pairs of C-H⋯O inter-actions, which generate R22(14) loops. In the crystal of (III), [010] C(8) chains arise, with adjacent mol-ecules linked by pairs of C-H⋯O hydrogen bonds. The packing for (IV) features unusually short C-H⋯O inter-actions arising from an H atom attached to the benzene ring (H⋯O = 2.18 Å), which lead to C(9) [301] chains. Hirshfeld fingerprint percentage contact contributions are similar for the four title compounds.
Collapse
Affiliation(s)
- Laura N. F. Cardoso
- Fundação Oswaldo Cruz, Instituto de Tecnologia em Fármacos–FarManguinhos, Rua Sizenando Nabuco, 100, Manguinhos, 21041-250 Rio de Janeiro, Brazil
- Instituto de Química, Universidade Federal do Rio de Janeiro, Cidade Universitária, Rio de Janeiro, Brazil
| | - Thais C. M. Noguiera
- Fundação Oswaldo Cruz, Instituto de Tecnologia em Fármacos–FarManguinhos, Rua Sizenando Nabuco, 100, Manguinhos, 21041-250 Rio de Janeiro, Brazil
| | - James L. Wardell
- Fundação Oswaldo Cruz, Instituto de Tecnologia em Fármacos–FarManguinhos, Rua Sizenando Nabuco, 100, Manguinhos, 21041-250 Rio de Janeiro, Brazil
- Department of Chemistry, University of Aberdeen, Meston Walk, Aberdeen AB24 3UE, Scotland
| | - Marcus V. N. de Souza
- Fundação Oswaldo Cruz, Instituto de Tecnologia em Fármacos–FarManguinhos, Rua Sizenando Nabuco, 100, Manguinhos, 21041-250 Rio de Janeiro, Brazil
| | - William T. A. Harrison
- Department of Chemistry, University of Aberdeen, Meston Walk, Aberdeen AB24 3UE, Scotland
| |
Collapse
|
4
|
Cardoso LNF, Noguiera TCM, Kaiser CR, Wardell JL, de Souza MVN, Harrison WTA. Crystal structures and Hirshfeld surfaces of differently substituted ( E)- N'-benzyl-idene- N-methyl-2-(thio-phen-2-yl)acetohydrazides. Acta Crystallogr E Crystallogr Commun 2017; 73:1636-1641. [PMID: 29152340 PMCID: PMC5683480 DOI: 10.1107/s2056989017014384] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2017] [Accepted: 10/05/2017] [Indexed: 12/03/2022]
Abstract
The syntheses and crystal structures of (E)-N'-(3-cyano-benzyl-idene)-N-methyl-2-(thio-phen-2-yl)acetohydrazide, C15H13N3OS, (I), and (E)-N'-(4-meth-oxy-benzyl-idene)-N-methyl-2-(thio-phen-2-yl)acetohydrazide, C15H16N2O2S, (II), with different substituents in the meta and para position of the benzene ring are described. Compounds (I) and (II) both crystallize with two mol-ecules in the asymmetric unit, with generally similar conformations [r.m.s. overlay fits for (I) and (II) of 0.334 and 0.280 Å, respectively] that approximate to L-shapes. The thio-phene rings in (I) are well ordered, whereas those in (II) exhibit 'flip' rotational disorder [occupancies 0.662 (2) and 0.338 (2) for mol-ecule 1, and 0.549 (3) and 0.451 (3) for mol-ecule 2]. The packing for (I) features short C-H⋯O inter-actions arising from the C-H grouping adjacent to the cyanide group and C-H⋯Nc (c = cyanide) links arising from the methine groups to generate [110] double chains. Weak C-H⋯π inter-actions inter-link the chains into a three-dimensional network. The packing for (II) features numerous C-H⋯O and C-H⋯π inter-actions arising from different donor groups to generate a three-dimensional network. Hirshfeld fingerprint plots indicate significant differences in the percentage contact surfaces for (I) and (II).
Collapse
Affiliation(s)
- Laura N. F. Cardoso
- Fundação Oswaldo Cruz, Instituto de Tecnologia em Fármacos–FarManguinhos, Rua Sizenando Nabuco, 100, Manguinhos, 21041-250 Rio de Janeiro, Brazil
- Instituto de Química, Universidade Federal do Rio de Janeiro, Cidade Universitária, Rio de Janeiro, Brazil
| | - Thais C. M. Noguiera
- Fundação Oswaldo Cruz, Instituto de Tecnologia em Fármacos–FarManguinhos, Rua Sizenando Nabuco, 100, Manguinhos, 21041-250 Rio de Janeiro, Brazil
| | - Carlos R. Kaiser
- Instituto de Química, Universidade Federal do Rio de Janeiro, Cidade Universitária, Rio de Janeiro, Brazil
| | - James L. Wardell
- Fundação Oswaldo Cruz, Instituto de Tecnologia em Fármacos–FarManguinhos, Rua Sizenando Nabuco, 100, Manguinhos, 21041-250 Rio de Janeiro, Brazil
- Department of Chemistry, University of Aberdeen, Meston Walk, Aberdeen AB24 3UE, Scotland
| | - Marcus V. N. de Souza
- Fundação Oswaldo Cruz, Instituto de Tecnologia em Fármacos–FarManguinhos, Rua Sizenando Nabuco, 100, Manguinhos, 21041-250 Rio de Janeiro, Brazil
| | - William T. A. Harrison
- Department of Chemistry, University of Aberdeen, Meston Walk, Aberdeen AB24 3UE, Scotland
| |
Collapse
|
5
|
Cardoso LNF, Nogueira TCM, Wardell JL, Wardell SMSV, de Souza MVN, Jotani MM, Tiekink ERT. N'-[(1E)-(5-Nitro-furan-2-yl)methyl-idene]thio-phene-2-carbohydrazide: crystal structure and Hirshfeld surface analysis. Acta Crystallogr E Crystallogr Commun 2016; 72:1025-31. [PMID: 27555956 PMCID: PMC4992931 DOI: 10.1107/s2056989016009968] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2016] [Accepted: 06/19/2016] [Indexed: 11/13/2022]
Abstract
In the title carbohydrazide, C10H7N3O4S, the dihedral angle between the terminal five-membered rings is 27.4 (2)°, with these lying to the same side of the plane through the central CN2C(=O) atoms (r.m.s. deviation = 0.0403 Å), leading to a curved mol-ecule. The conformation about the C=N imine bond [1.281 (5) Å] is E, and the carbonyl O and amide H atoms are anti. In the crystal, N-H⋯O hydrogen bonds lead to supra-molecular chains, generated by a 41 screw-axis along the c direction. A three-dimensional architecture is consolidated by thienyl-C-H⋯O(nitro) and furanyl-C-H⋯O(nitro) inter-actions, as well as π-π inter-actions between the thienyl and furanyl rings [inter-centroid distance = 3.515 (2) Å]. These, and other, weak inter-molecular inter-actions, e.g. nitro-N-O⋯π(thien-yl), have been investigated by Hirshfeld surface analysis, which confirms the dominance of the conventional N-H⋯O hydrogen bonding to the overall mol-ecular packing.
Collapse
Affiliation(s)
- Laura N. F. Cardoso
- Fundaçaö Oswaldo Cruz, Instituto de Tecnologia em Fármacos-Far Manguinhos, 21041-250 Rio de Janeiro, RJ, Brazil
| | - Thais C. M. Nogueira
- Fundaçaö Oswaldo Cruz, Instituto de Tecnologia em Fármacos-Far Manguinhos, 21041-250 Rio de Janeiro, RJ, Brazil
| | - James L. Wardell
- Fundaçaö Oswaldo Cruz, Instituto de Tecnologia em Fármacos-Far Manguinhos, 21041-250 Rio de Janeiro, RJ, Brazil
- Department of Chemistry, University of Aberdeen, Old Aberdeen, AB24 3UE, Scotland
| | | | - Marcus V. N. de Souza
- Fundaçaö Oswaldo Cruz, Instituto de Tecnologia em Fármacos-Far Manguinhos, 21041-250 Rio de Janeiro, RJ, Brazil
| | - Mukesh M. Jotani
- Department of Physics, Bhavan’s Sheth R. A. College of Science, Ahmedabad, Gujarat 380 001, India
| | - Edward R. T. Tiekink
- Research Centre for Crystalline Materials, Faculty of Science and Technology, Sunway University, 47500 Bandar Sunway, Selangor Darul Ehsan, Malaysia
| |
Collapse
|