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Kopriva S, Rahimzadeh Karvansara P, Takahashi H. Adaptive modifications in plant sulfur metabolism over evolutionary time. JOURNAL OF EXPERIMENTAL BOTANY 2024; 75:4697-4711. [PMID: 38841807 PMCID: PMC11350084 DOI: 10.1093/jxb/erae252] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2024] [Accepted: 06/03/2024] [Indexed: 06/07/2024]
Abstract
Sulfur (S) is an essential element for life on Earth. Plants are able to take up and utilize sulfate (SO42-), the most oxidized inorganic form of S compounds on Earth, through the reductive S assimilatory pathway that couples with photosynthetic energy conversion. Organic S compounds are subsequently synthesized in plants and made accessible to animals, primarily as the amino acid methionine. Thus, plant S metabolism clearly has nutritional importance in the global food chain. S metabolites may be part of redox regulation and drivers of essential metabolic pathways as cofactors and prosthetic groups, such as Fe-S centers, CoA, thiamine, and lipoic acid. The evolution of the S metabolic pathways and enzymes reflects the critical importance of functional innovation and diversifications. Here we review the major evolutionary alterations that took place in S metabolism across different scales and outline research directions that may take advantage of understanding the evolutionary adaptations.
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Affiliation(s)
- Stanislav Kopriva
- Institute for Plant Sciences, Cluster of Excellence on Plant Sciences (CEPLAS), University of Cologne, Zülpicher Str. 47b, D-50674 Cologne, Germany
| | - Parisa Rahimzadeh Karvansara
- Institute of Molecular Photosynthesis, Cluster of Excellence on Plant Sciences (CEPLAS), Heinrich Heine University Düsseldorf, D-40225 Düsseldorf, Germany
| | - Hideki Takahashi
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824, USA
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Co-expression of bacterial aspartate kinase and adenylylsulfate reductase genes substantially increases sulfur amino acid levels in transgenic alfalfa (Medicago sativa L.). PLoS One 2014; 9:e88310. [PMID: 24520364 PMCID: PMC3919742 DOI: 10.1371/journal.pone.0088310] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2013] [Accepted: 01/07/2014] [Indexed: 11/19/2022] Open
Abstract
Alfalfa (Medicago sativa L.) is one of the most important forage crops used to feed livestock, such as cattle and sheep, and the sulfur amino acid (SAA) content of alfalfa is used as an index of its nutritional value. Aspartate kinase (AK) catalyzes the phosphorylation of aspartate to Asp-phosphate, the first step in the aspartate family biosynthesis pathway, and adenylylsulfate reductase (APR) catalyzes the conversion of activated sulfate to sulfite, providing reduced sulfur for the synthesis of cysteine, methionine, and other essential metabolites and secondary compounds. To reduce the feedback inhibition of other metabolites, we cloned bacterial AK and APR genes, modified AK, and introduced them into alfalfa. Compared to the wild-type alfalfa, the content of cysteine increased by 30% and that of methionine increased substantially by 60%. In addition, a substantial increase in the abundance of essential amino acids (EAAs), such as aspartate and lysine, was found. The results also indicated a close connection between amino acid metabolism and the tricarboxylic acid (TCA) cycle. The total amino acid content and the forage biomass tested showed no significant changes in the transgenic plants. This approach provides a new method for increasing SAAs and allows for the development of new genetically modified crops with enhanced nutritional value.
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Crawford NA, Yee BC, Nishizawa AN, Buchanan BB. Occurrence of cytoplasmic f
- and m
-type thioredoxins in leaves. FEBS Lett 2001. [DOI: 10.1016/0014-5793(79)81101-1] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Lillig CH, Prior A, Schwenn JD, Aslund F, Ritz D, Vlamis-Gardikas A, Holmgren A. New thioredoxins and glutaredoxins as electron donors of 3'-phosphoadenylylsulfate reductase. J Biol Chem 1999; 274:7695-8. [PMID: 10075658 DOI: 10.1074/jbc.274.12.7695] [Citation(s) in RCA: 118] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
Reduction of inorganic sulfate to sulfite in prototrophic bacteria occurs with 3'-phosphoadenylylsulfate (PAPS) as substrate for PAPS reductase and is the first step leading to reduced sulfur for cellular biosynthetic reactions. The relative efficiency as reductants of homogeneous highly active PAPS reductase of the newly identified second thioredoxin (Trx2) and glutaredoxins (Grx1, Grx2, Grx3, and a mutant Grx1C14S) was compared with the well known thioredoxin (Trx1) from Escherichia coli. Trx1, Trx2, and Grx1 supported virtually identical rates of sulfite formation with a Vmax ranging from 6.6 units mg-1 (Trx1) to 5.1 units mg-1 (Grx1), whereas Grx1C14S was only marginally active, and Grx2 and Grx3 had no activity. The structural difference between active reductants had no effect upon Km PAPS (22.5 microM). Grx1 effectively replaced Trx1 with essentially identical Km-values: Km trx1 (13.7 microM), Km grx1 (14.9 microM), whereas the Km trx2 was considerably higher (34.2 microM). The results agree with previous in vivo data suggesting that Trx1 or Grx1 is essential for sulfate reduction but not for ribonucleotide reduction in E. coli.
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Affiliation(s)
- C H Lillig
- Biochemistry of Plants, Faculty of Biology, Ruhr-University, 44780 Bochum, Germany
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Tamoi M, Murakami A, Takeda T, Shigeoka S. Acquisition of a new type of fructose-1,6-bisphosphatase with resistance to hydrogen peroxide in cyanobacteria: molecular characterization of the enzyme from Synechocystis PCC 6803. BIOCHIMICA ET BIOPHYSICA ACTA 1998; 1383:232-44. [PMID: 9602137 DOI: 10.1016/s0167-4838(97)00208-2] [Citation(s) in RCA: 54] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
We have previously described that Synechococcus PCC 7942 cells contain two fructose-1,6-bisphosphatase isozymes, designated F-I and F-II the former belongs to a new type of fructose-1,6-bisphosphatase, while the latter is a typical enzyme similar to the cytosolic and chloroplastic forms from eukaryotic cells [Tamoi et al., Arch. Biochem. Biophys., 334, 1996, 27-36]. The genes of F-I and F-II were found in three species of cyanobacteria, Synechocystis PCC 6803, Anabaena 7120, and Plectonema boryanum according to the results of Southern hybridization with a probe from the S. 7942 F-I and F-II genes. In Western blotting, antibody raised against the S. 7942 F-I cross-reacted with a protein band corresponding to the F-I in each crude extract from cyanobacterial cells, whereas the antibody against F-II failed to cross-react with any protein band corresponding to the F-II. In cyanobacterial cells, only one form of F-I has been resolved by ion-exchange chromatography at same concentration of NaCl as shown in the F-I of S. 7942. The F-I from Synechocystis 6803 has been purified to electrophoretic homogeneity. The enzyme hydrolyzed both fructose 1,6-bisphosphate and sedoheptulose 1,7-bisphosphate. The apparent K(m) values of the enzyme for fructose 1,6-bisphosphate and sedoheptulose 1,7-bisphosphate were 57 +/- 2.4 and 180 +/- 6.3 microM, respectively. The enzyme activity was inhibited by AMP with a Ki value of 0.57 +/- 0.03 mM for fructose 1,6-bisphosphate and 0.35 +/- 0.02 mM for sedoheptulose 1,7-bisphosphate. The enzyme showed a molecular mass of 168 kDa which was composed of four identical subunits. The activities of FBPase and SBPase from the F-I were resistant to hydrogen peroxide up to 1 mM. The nucleotide sequence of the S. 6803 F-I gene showed an open reading frame of 1164 bp that encoded a protein of 388 amino acid residues (approx. molecular mass of 41.6 kDa). The deduced amino acid sequences had homologous sequences with the S. 7942 F-I.
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Affiliation(s)
- M Tamoi
- Department of Food and Nutrition, Faculty of Agriculture, Kinki University, Nara, Japan
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Rasulov AS. Isolation, purification, and properties of thioredoxin fromAnkistrodesmus braunii. Chem Nat Compd 1990. [DOI: 10.1007/bf00605203] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Abstract
Thioredoxins have been purified from pig heart and potato tuber mitochondria which differ in chromatographic behaviour, enzyme activating capacity, and slightly higher molecular mass (Mr = 12,500) from the major thioredoxin(s) present in mitochondria-free fractions of the same tissue. Both mt-thioredoxins can serve as hydrogen donor for E. coli ribonucleotide reductase but only the plant protein activates spinach chloroplast NADP malate dehydrogenase in vitro. Mitochondrial target enzymes specifically activated by thioredoxin have not as yet been identified.
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Affiliation(s)
- J Bodenstein-Lang
- Fachbereich Chemie, Arbeitsgruppe Biochemie der Phillipps-Universität,Marburg, FRG
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Kotzabasis K, Senger H, Langlotz P, Follmann H. Stimulation of protochlorophyllide oxidoreductase by thioredoxin. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 1989. [DOI: 10.1016/1011-1344(89)80037-5] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Schriek U, Schwenn JD. Properties of the purified APS-kinase from Escherichia coli and Saccharomyces cerevisiae. Arch Microbiol 1986; 145:32-8. [PMID: 3019265 DOI: 10.1007/bf00413024] [Citation(s) in RCA: 32] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
Adenylylsulphate kinase (EC 2.7.1.25, ATP:adenylylsulphate 3'-phosphotransferase) has been isolated from Escherichia coli and from Saccharomyces cerevisiae. As major steps of purification, affinity chromatography on Sepharose CL 6B ("blue" or "red") and chromatofocusing on polybuffer PBE 94tm were employed. The proteins were obtained in nearly homogeneous state after five chromatographic steps. The isolated enzymes from both sources appeared predominantly to exist as dimers. Upon reduction of the protein with dithiothreitol, it disintegrated into assumingly identical smaller subunits (E. coli rom Mr 90-85,000 to 45-40,000 and S. cerevisiae from 52-49,500 to 28-29,500). Both forms, dimer and monomer were found catalytically active. Preincubation of the isolated enzyme from either source in the presence of thioredoxin plus DTT, reduced glutathione or DTT increased the activity significantly. Treatment of the enzyme with SH-blocking reagents inactivated the enzyme irreversibly as compared to the inactivation caused by oxidants (2,6-dichlorophenol-indophenol, ferricyanide or oxydized glutathione). This oxidant induced inactivation was less pronounced for the fungal enzyme than for the bacterial protein. The enzyme from E. coli required thioredoxin in order to alleviate the GSSG-induced inactivation.
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Hofmann R, Feller W, Pries M, Follmann H. Deoxyribonucleotide biosynthesis in green algae. Purification and characterization of ribonucleoside-diphosphate reductase from Scenedesmus obliquus. ACTA ACUST UNITED AC 1985. [DOI: 10.1016/0167-4838(85)90178-5] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Fernandez VM, Hatchikian E, Cammack R. Properties and reactivation of two different deactivated forms of Desulfovibrio gigas hydrogenase. ACTA ACUST UNITED AC 1985. [DOI: 10.1016/0167-4838(85)90175-x] [Citation(s) in RCA: 159] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Häberlein I, Schimpff-Weiland G, Follmann H. Unexpected specificity in the thioredoxin activation of fructose-bis-phosphatases from different plants. Biochem Biophys Res Commun 1985; 127:401-6. [PMID: 2983719 DOI: 10.1016/s0006-291x(85)80174-1] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
Green seedlings of soy bean and wheat contain, like the plant seeds, multiple thioredoxin proteins which possess all typical thioredoxin properties but are inactive in the stimulation assay with spinach fructose-bis-phosphatase. However the pure proteins do have thioredoxin f activity when tested with homologous enzymes isolated from soy bean or wheat leaves, respectively, in the presence of Mg++. This new type of species specificity, unknown in all other in vitro assays of reduced thioredoxins, has to be considered in characterizing complete thioredoxin profiles in plants.
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Schmidt A, Erdle I, Gamon B. Isolation and characterization of thiosulfate reductases from the green alga Chlorella fusca. PLANTA 1984; 162:243-249. [PMID: 24253096 DOI: 10.1007/bf00397446] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/16/1984] [Accepted: 04/24/1984] [Indexed: 06/02/2023]
Abstract
Thiosulfate-reductase activity (TSR) measured as sulfide release from thiosulfate was detected in crude extracts of Chlorella using dithioerythritol (DTE) as electron donor. Purification of this activity by ammonium-sulfate precipitation between 35% and 80% followed by Sephadex G-50 gel filtration, diethylaminoethyl-cellulose chromatography, and gel filtration on Biogel A 1.5 M led to four distinct proteins having molecular weights of: TSR I, 28000; TSR II, 26500; TSR IIIa, 55000; TSR IIIb, 24000 daltons. These thiosulfate reductases were most active with DTE; the monothiols glutathione, L-cysteine, and β-mercaptoethanol had little activity towards this system. The following pH optima were obtained: for TSR I and TSR II, 9.0; for TSR IIIa, 8.5; and for TSR IIIb, 9.5. The apparent-Km data for DTE and thiosulfate were determined to: [Formula: see text] TSR I, 0.164 mmol·l(-1) and TSR II, 0.156 mmol·l(-1); KmDTE TSR I, 1.54 mmol·l(-1) and TSR II 1.54 mmol·l(-1). The thiosulfate reductases IIIa and IIIb were further stimulated by addition of thioredoxin. All TSR fractions catalyzed SCN formation from thiosulfate and cyanate and thus had rhodanese activity; this activity, however, could only be detected in the presence of thiols.
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Affiliation(s)
- A Schmidt
- Botanisches Institut der Universität, Menzinger Strasse 67, D-8000, München 19, Germany
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Tischner R, Schmidt A. Light mediated regulation of nitrate assimilation in Synechococcus leopoliensis. Arch Microbiol 1984. [DOI: 10.1007/bf00414457] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Wink M, Hartmann T. Activation of chloroplast-localized enzymes of quinolizidine alkaloid biosynthesis by reduced thioredoxin. PLANT CELL REPORTS 1981; 1:6-9. [PMID: 24258744 DOI: 10.1007/bf00267646] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/1981] [Indexed: 06/02/2023]
Abstract
Previous studies from the laboratory of the authors have shown that the tetracyclic quinolizidine alkaloids are synthesized in leaf chloroplasts of Lupinus polyphyllus. Additionally, alkaloid formation reveals a light dependent diurnal rhythm in vivo. The present study shows that the principal biosynthetic enzymes, lysine decarboxylase and 17-oxosparteine synthase, assayed in acetone powder extracts and isolated chloroplasts of L. polyphyllus, were activated by reduced E. coli thioredoxin. Since both enzymes display optimal activity at pH 8 and were rather inactive at pH 7, both thioredoxin and the light mediated shift in the hydrogen ion concentration of the chloroplast stroma from pH 7 to pH 8 may be involved in the light controlled alkaloid formation.
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Affiliation(s)
- M Wink
- Institut für Pharmazeutische Biologie der Technischen Universität Braunschweig, D-3300, Braunschweig, Federal Republic of Germany
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Godeh M, Udvardy J, Farkas GL. Redox modulation of a phosphatase from Anacystis nidulans. PLANTA 1981; 152:408-414. [PMID: 24301113 DOI: 10.1007/bf00385356] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/1980] [Accepted: 04/14/1981] [Indexed: 06/02/2023]
Abstract
Ascorbic acid (AA) increased the phosphatase activity (pH 6.8) in 10,000 g supernatants from Anacystis nidulans. The enzyme activated by AA was deactivated by dehydroascorbic acid (DHAA). The modulation by AA/DHAA of phosphatase activity in Anacystis appears to be specific; a number of other redox compounds, known to modulate other enzymes, had no effect on the Anacystis phosphatase. A purified phosphatase preparation from Anacystis was also deactivated by DHAA. In contrast, the purified enzyme was not activated by AA, suggesting that a factor mediating the effect of AA was lost during purification. Another factor was found to protect the purified phosphatase against deactivation by DHAA. The enzyme was characterized as a phosphatase with a broad substrate specificity, an apparent molecular weight of 19,000, and a pH optimum of 6.0-7.0. Dialysis of the enzyme preparation against EDTA abolished the phosphatase activity which could be restored by Zn(2+) ions and partially restored by Co(2+) ions. Crude extracts also contained a latent enzyme, the phosphatase activity of which could be detected in the presence of Co(2+) ions only. Zn(2+) ions did not activate this enzymatically inactive protein. The Co(2+)-dependent phosphatase had an apparent mol. wt. of 40,000, a broad substrate specificity, and an alkaline pH-optimum. Infection of Anacystis cultures by cyanophage AS-1 resulted in a decrease in phosphatase activity. The enzyme present in 10,000 g supernatants from infected cells could not be modulated by the AA/DHAA system.
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Affiliation(s)
- M Godeh
- Institute of Plant Physiology, Biological Research Center, Hungarian Academy of Sciences, P.O. Box 521, H-6701, Szeged, Hungary
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Nishizawa A, Buchanan B. Enzyme regulation in C4 photosynthesis. Purification and properties of thioredoxin-linked fructose bisphosphatase and sedoheptulose bisphosphatase from corn leaves. J Biol Chem 1981. [DOI: 10.1016/s0021-9258(19)69136-2] [Citation(s) in RCA: 41] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022] Open
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Schmidt A. Isolation of two thioredoxins from the cyanobacterium Synechococcus 6301. Arch Microbiol 1980. [DOI: 10.1007/bf00427202] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Wolosiuk R, Crawford N, Yee B, Buchanan B. Isolation of three thioredoxins from spinach leaves. J Biol Chem 1979. [DOI: 10.1016/s0021-9258(17)37818-3] [Citation(s) in RCA: 149] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022] Open
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Nishizawa AN, Wolosiuk RA, Buchanan BB. Chloroplast phenylalanine ammonia-lyase from spinach leaves : Evidence for light-mediated regulation via the ferredoxin/Thioredoxin system. PLANTA 1979; 145:7-12. [PMID: 24317559 DOI: 10.1007/bf00379922] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/1978] [Accepted: 11/27/1978] [Indexed: 06/02/2023]
Abstract
Phenylalanine ammonia-lyase (PAL) from spinach (Spinacia oleracea L.) leaves was resolved into three forms by diethyl-aminoethyl(DEAE)-cellulose chromatography. Two forms were found in isolated chloroplasts, and the third form (the major component) was located outside of the chloroplasts. One of the chloroplast forms of the enzyme (designated the regulatory form) was activated by reduced thioredoxin. Neither the other chloroplast form nor the extra-chloroplast form showed a response to thioredoxin. After further purification by hydroxyapatite column chromatography and gel filtration, the regulatory form of chloroplast PAL was stimulated approximately 3-fold by thioredoxin reduced either photochemically by chloroplast membranes, via ferredoxin and ferredoxin-thioredoxin reductase, or chemically by dithiothreitol. Once activated, the enzyme required an added oxidant for deactivation. Physiological oxidants-oxidized glutathione (GSSG) and dehydroascorbate-as well as nonphysiological oxidants-sodium tetrathionate and diamide-were effective in deactivation. The results indicate that chloroplast PAL is regulated by light via the ferredoxin/thioredoxin system in a manner similar to that described for regulatory enzymes of CO2 assimilation. The extra-chloroplast form of the enzyme, by contrast, appears to be regulated by light via the earlier-described phytochrome-linked system.
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Affiliation(s)
- A N Nishizawa
- Department of Cell Physiology, University of California, 94720, Berkeley, CA, USA
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