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Bach P, Frank C, Kunde W. Why motor imagery is not really motoric: towards a re-conceptualization in terms of effect-based action control. PSYCHOLOGICAL RESEARCH 2024; 88:1790-1804. [PMID: 36515699 PMCID: PMC11315751 DOI: 10.1007/s00426-022-01773-w] [Citation(s) in RCA: 14] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2021] [Accepted: 11/11/2022] [Indexed: 12/15/2022]
Abstract
Overt and imagined action seem inextricably linked. Both have similar timing, activate shared brain circuits, and motor imagery influences overt action and vice versa. Motor imagery is, therefore, often assumed to recruit the same motor processes that govern action execution, and which allow one to play through or simulate actions offline. Here, we advance a very different conceptualization. Accordingly, the links between imagery and overt action do not arise because action imagery is intrinsically motoric, but because action planning is intrinsically imaginistic and occurs in terms of the perceptual effects one want to achieve. Seen like this, the term 'motor imagery' is a misnomer of what is more appropriately portrayed as 'effect imagery'. In this article, we review the long-standing arguments for effect-based accounts of action, which are often ignored in motor imagery research. We show that such views provide a straightforward account of motor imagery. We review the evidence for imagery-execution overlaps through this new lens and argue that they indeed emerge because every action we execute is planned, initiated and controlled through an imagery-like process. We highlight findings that this new view can now explain and point out open questions.
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Affiliation(s)
- Patric Bach
- School of Psychology, University of Aberdeen, William Guild Building, Kings College, Aberdeen, UK.
| | - Cornelia Frank
- Department of Sports and Movement Science, School of Educational and Cultural Studies, Osnabrück University, Osnabrück, Germany
| | - Wilfried Kunde
- Department of Psychology, Julius-Maximilians-Universität Würzburg, Röntgenring 11, Würzburg, Germany
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2
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Mollard S, Wacongne C, Bohte SM, Roelfsema PR. Recurrent neural networks that learn multi-step visual routines with reinforcement learning. PLoS Comput Biol 2024; 20:e1012030. [PMID: 38683837 PMCID: PMC11081502 DOI: 10.1371/journal.pcbi.1012030] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2023] [Revised: 05/09/2024] [Accepted: 04/01/2024] [Indexed: 05/02/2024] Open
Abstract
Many cognitive problems can be decomposed into series of subproblems that are solved sequentially by the brain. When subproblems are solved, relevant intermediate results need to be stored by neurons and propagated to the next subproblem, until the overarching goal has been completed. We will here consider visual tasks, which can be decomposed into sequences of elemental visual operations. Experimental evidence suggests that intermediate results of the elemental operations are stored in working memory as an enhancement of neural activity in the visual cortex. The focus of enhanced activity is then available for subsequent operations to act upon. The main question at stake is how the elemental operations and their sequencing can emerge in neural networks that are trained with only rewards, in a reinforcement learning setting. We here propose a new recurrent neural network architecture that can learn composite visual tasks that require the application of successive elemental operations. Specifically, we selected three tasks for which electrophysiological recordings of monkeys' visual cortex are available. To train the networks, we used RELEARNN, a biologically plausible four-factor Hebbian learning rule, which is local both in time and space. We report that networks learn elemental operations, such as contour grouping and visual search, and execute sequences of operations, solely based on the characteristics of the visual stimuli and the reward structure of a task. After training was completed, the activity of the units of the neural network elicited by behaviorally relevant image items was stronger than that elicited by irrelevant ones, just as has been observed in the visual cortex of monkeys solving the same tasks. Relevant information that needed to be exchanged between subroutines was maintained as a focus of enhanced activity and passed on to the subsequent subroutines. Our results demonstrate how a biologically plausible learning rule can train a recurrent neural network on multistep visual tasks.
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Affiliation(s)
- Sami Mollard
- Department of Vision & Cognition, Netherlands Institute for Neuroscience, Amsterdam, The Netherlands
| | - Catherine Wacongne
- Department of Vision & Cognition, Netherlands Institute for Neuroscience, Amsterdam, The Netherlands
- AnotherBrain, Paris, France
| | - Sander M. Bohte
- Machine Learning Group, Centrum Wiskunde & Informatica, Amsterdam, The Netherlands
- Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, The Netherlands
| | - Pieter R. Roelfsema
- Department of Vision & Cognition, Netherlands Institute for Neuroscience, Amsterdam, The Netherlands
- Laboratory of Visual Brain Therapy, Sorbonne Université, Institut National de la Santé et de la Recherche Médicale, Centre National de la Recherche Scientifique, Institut de la Vision, Paris, France
- Department of Integrative Neurophysiology, Center for Neurogenomics and Cognitive Research, VU University, Amsterdam, The Netherlands
- Department of Neurosurgery, Academic Medical Center, Amsterdam, The Netherlands
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3
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Heij J, Raimondo L, Siero JCW, Dumoulin SO, van der Zwaag W, Knapen T. A selection and targeting framework of cortical locations for line-scanning fMRI. Hum Brain Mapp 2023; 44:5471-5484. [PMID: 37608563 PMCID: PMC10543358 DOI: 10.1002/hbm.26459] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2023] [Revised: 07/15/2023] [Accepted: 08/02/2023] [Indexed: 08/24/2023] Open
Abstract
Depth-resolved functional magnetic resonance imaging (fMRI) is an emerging field growing in popularity given the potential of separating signals from different computational processes in cerebral cortex. Conventional acquisition schemes suffer from low spatial and temporal resolutions. Line-scanning methods allow depth-resolved fMRI by sacrificing spatial coverage to sample blood oxygenated level-dependent (BOLD) responses at ultra-high temporal and spatial resolution. For neuroscience applications, it is critical to be able to place the line accurately to (1) sample the right neural population and (2) target that neural population with tailored stimuli or tasks. To this end, we devised a multi-session framework where a target cortical location is selected based on anatomical and functional properties. The line is then positioned according to this information in a separate second session, and we tailor the experiment to focus on the target location. Anatomically, the precision of the line placement was confirmed by projecting a nominal representation of the acquired line back onto the surface. Functional estimates of neural selectivities in the line, as quantified by a visual population-receptive field model, resembled the target selectivities well for most subjects. This functional precision was quantified in detail by estimating the distance between the visual field location of the targeted vertex and the location in visual cortex (V1) that most closely resembled the line-scanning estimates; this distance was on average ~5.5 mm. Given the dimensions of the line, differences in acquisition, session, and stimulus design, this validates that line-scanning can be used to probe local neural sensitivities across sessions. In summary, we present an accurate framework for line-scanning MRI; we believe such a framework is required to harness the full potential of line-scanning and maximize its utility. Furthermore, this approach bridges canonical fMRI experiments with electrophysiological experiments, which in turn allows novel avenues for studying human physiology non-invasively.
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Affiliation(s)
- Jurjen Heij
- Spinoza Centre for NeuroimagingAmsterdamNetherlands
- Department of Computational Cognitive Neuroscience and NeuroimagingNetherlands Institute for NeuroscienceAmsterdamNetherlands
- Department of Experimental and Applied PsychologyVU UniversityAmsterdamNetherlands
| | - Luisa Raimondo
- Spinoza Centre for NeuroimagingAmsterdamNetherlands
- Department of Computational Cognitive Neuroscience and NeuroimagingNetherlands Institute for NeuroscienceAmsterdamNetherlands
- Department of Experimental and Applied PsychologyVU UniversityAmsterdamNetherlands
| | - Jeroen C. W. Siero
- Spinoza Centre for NeuroimagingAmsterdamNetherlands
- Department of Computational Cognitive Neuroscience and NeuroimagingNetherlands Institute for NeuroscienceAmsterdamNetherlands
- Department of RadiologyUniversity Medical Center UtrechtUtrechtthe Netherlands
| | - Serge O. Dumoulin
- Spinoza Centre for NeuroimagingAmsterdamNetherlands
- Department of Computational Cognitive Neuroscience and NeuroimagingNetherlands Institute for NeuroscienceAmsterdamNetherlands
- Department of Experimental and Applied PsychologyVU UniversityAmsterdamNetherlands
- Department of Experimental PsychologyUtrecht UniversityUtrechtNetherlands
| | - Wietske van der Zwaag
- Spinoza Centre for NeuroimagingAmsterdamNetherlands
- Department of Computational Cognitive Neuroscience and NeuroimagingNetherlands Institute for NeuroscienceAmsterdamNetherlands
| | - Tomas Knapen
- Spinoza Centre for NeuroimagingAmsterdamNetherlands
- Department of Computational Cognitive Neuroscience and NeuroimagingNetherlands Institute for NeuroscienceAmsterdamNetherlands
- Department of Experimental and Applied PsychologyVU UniversityAmsterdamNetherlands
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4
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Roelfsema PR. Solving the binding problem: Assemblies form when neurons enhance their firing rate-they don't need to oscillate or synchronize. Neuron 2023; 111:1003-1019. [PMID: 37023707 DOI: 10.1016/j.neuron.2023.03.016] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2023] [Revised: 02/25/2023] [Accepted: 03/09/2023] [Indexed: 04/08/2023]
Abstract
When we look at an image, its features are represented in our visual system in a highly distributed manner, calling for a mechanism that binds them into coherent object representations. There have been different proposals for the neuronal mechanisms that can mediate binding. One hypothesis is that binding is achieved by oscillations that synchronize neurons representing features of the same perceptual object. This view allows separate communication channels between different brain areas. Another hypothesis is that binding of features that are represented in different brain regions occurs when the neurons in these areas that respond to the same object simultaneously enhance their firing rate, which would correspond to directing object-based attention to these features. This review summarizes evidence in favor of and against these two hypotheses, examining the neuronal correlates of binding and assessing the time course of perceptual grouping. I conclude that enhanced neuronal firing rates bind features into coherent object representations, whereas oscillations and synchrony are unrelated to binding.
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Affiliation(s)
- Pieter R Roelfsema
- Department of Vision & Cognition, Netherlands Institute for Neuroscience (KNAW), 1105 BA Amsterdam, the Netherlands; Department of Integrative Neurophysiology, VU University, De Boelelaan 1085, 1081 HV Amsterdam, the Netherlands; Department of Psychiatry, Academic Medical Centre, Postbus 22660, 1100 DD Amsterdam, the Netherlands; Laboratory of Visual Brain Therapy, Sorbonne Université, INSERM, CNRS, Institut de la Vision, 17 rue Moreau, 75012 Paris, France.
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5
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Klink PC, Teeuwen RRM, Lorteije JAM, Roelfsema PR. Inversion of pop-out for a distracting feature dimension in monkey visual cortex. Proc Natl Acad Sci U S A 2023; 120:e2210839120. [PMID: 36812207 PMCID: PMC9992771 DOI: 10.1073/pnas.2210839120] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2022] [Accepted: 01/25/2023] [Indexed: 02/24/2023] Open
Abstract
During visual search, it is important to reduce the interference of distracting objects in the scene. The neuronal responses elicited by the search target stimulus are typically enhanced. However, it is equally important to suppress the representations of distracting stimuli, especially if they are salient and capture attention. We trained monkeys to make an eye movement to a unique "pop-out" shape stimulus among an array of distracting stimuli. One of these distractors had a salient color that varied across trials and differed from the color of the other stimuli, causing it to also pop-out. The monkeys were able to select the pop-out shape target with high accuracy and actively avoided the pop-out color distractor. This behavioral pattern was reflected in the activity of neurons in area V4. Responses to the shape targets were enhanced, while the activity evoked by the pop-out color distractor was only briefly enhanced, directly followed by a sustained period of pronounced suppression. These behavioral and neuronal results demonstrate a cortical selection mechanism that rapidly inverts a pop-out signal to "pop-in" for an entire feature dimension thereby facilitating goal-directed visual search in the presence of salient distractors.
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Affiliation(s)
- P. Christiaan Klink
- Department of Vision and Cognition, Netherlands Institute for Neuroscience, Royal Netherlands Academy of Arts and Sciences, 1105 BA, Amsterdam, The Netherlands
- Experimental Psychology, Helmholtz Institute, Utrecht University, 3584 CS, Utrecht, The Netherlands
- Laboratory of Visual Brain Therapy, Sorbonne Université, Institut National de la Santé et de la Recherche Médicale, Centre National de la Recherche Scientifique, Institut de la Vision, ParisF-75012, France
- Department of Integrative Neurophysiology, Centre for Neurogenomics and Cognitive Research, Vrije Universiteit, 1081 HV, Amsterdam, The Netherlands
| | - Rob R. M. Teeuwen
- Department of Vision and Cognition, Netherlands Institute for Neuroscience, Royal Netherlands Academy of Arts and Sciences, 1105 BA, Amsterdam, The Netherlands
| | - Jeannette A. M. Lorteije
- Department of Vision and Cognition, Netherlands Institute for Neuroscience, Royal Netherlands Academy of Arts and Sciences, 1105 BA, Amsterdam, The Netherlands
| | - Pieter R. Roelfsema
- Department of Vision and Cognition, Netherlands Institute for Neuroscience, Royal Netherlands Academy of Arts and Sciences, 1105 BA, Amsterdam, The Netherlands
- Laboratory of Visual Brain Therapy, Sorbonne Université, Institut National de la Santé et de la Recherche Médicale, Centre National de la Recherche Scientifique, Institut de la Vision, ParisF-75012, France
- Department of Integrative Neurophysiology, Centre for Neurogenomics and Cognitive Research, Vrije Universiteit, 1081 HV, Amsterdam, The Netherlands
- Department of Psychiatry, Amsterdam UMC, University of Amsterdam, 1105 AZ, Amsterdam, The Netherlands
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6
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Zhuo C, Tian H, Zhou C, Sun Y, Chen X, Li R, Chen J, Yang L, Li Q, Zhang Q, Xu Y, Song X. Transcranial direct current stimulation of the occipital lobes with adjunct lithium attenuates the progression of cognitive impairment in patients with first episode schizophrenia. Front Psychiatry 2022; 13:962918. [PMID: 36177219 PMCID: PMC9513041 DOI: 10.3389/fpsyt.2022.962918] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/06/2022] [Accepted: 08/02/2022] [Indexed: 01/10/2023] Open
Abstract
BACKGROUND There is no standard effective treatment for schizophrenia-associated cognitive impairment. Efforts to use non-invasive brain stimulation for this purpose have been focused mostly on the frontal cortex, with little attention being given to the occipital lobe. MATERIALS AND METHODS We compared the effects of nine intervention strategies on cognitive performance in psychometric measures and brain connectivity measured obtained from functional magnetic resonance imaging analyses. The strategies consisted of transcranial direct current stimulation (t-DCS) or repetitive transcranial magnetic stimulation (r-TMS) of the frontal lobe or of the occipital alone or with adjunct lithium, or lithium monotherapy. We measured global functional connectivity density (gFCD) voxel-wise. RESULTS Although all nine patient groups showed significant improvements in global disability scores (GDSs) following the intervention period (vs. before), the greatest improvement in GDS was observed for the group that received occipital lobe-targeted t-DCS with adjunct lithium therapy. tDCS of the occipital lobe improved gFCD throughout the brain, including in the frontal lobes, whereas stimulation of the frontal lobes had less far-reaching benefits on gFCD in the brain. Adverse secondary effects (ASEs) such as heading, dizziness, and nausea, were commonly experienced by patients treated with t-DCS and r-TMS, with or without lithium, whereas ASEs were rare with lithium alone. CONCLUSION The most effective treatment strategy for impacting cognitive impairment and brain communication was t-DCS stimulation of the occipital lobe with adjunct lithium therapy, though patients often experienced headache with dizziness and nausea after treatment sessions.
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Affiliation(s)
- Chuanjun Zhuo
- Key Laboratory of Real Time Brain Circuit Tracing in Neurology and Psychiatry (RTBNP_Lab), Tianjin Fourth Center Hospital, Tianjin Fourth Central Hospital of Tianjin Medical University, Tianjin, China.,Key Laboratory of Multiple Organ Damages of Major Psychoses (MODMP_Lab), Tianjin Fourth Center Hospital, Tianjin Medical Affiliated Tianjin Fourth Central Hospital, Nankai University Affiliated Tianjin Fourth Center Hospital, Tianjin, China.,Henan Psychiatric Transformation Research Key Laboratory, Zhengzhou University, Zhengzhou, Henan, China.,Biological Psychiatry International Joint Laboratory of Henan, Zhengzhou University, Zhengzhou, Henan, China.,t-DCS and r-TMS Center of Tianjin Anding Hospital, Tianjin Mental Health Center of Tianjin Medical University, Tianjin, China.,Department of Psychiatry, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, Henan, China
| | - Hongjun Tian
- Key Laboratory of Multiple Organ Damages of Major Psychoses (MODMP_Lab), Tianjin Fourth Center Hospital, Tianjin Medical Affiliated Tianjin Fourth Central Hospital, Nankai University Affiliated Tianjin Fourth Center Hospital, Tianjin, China
| | - Chunhua Zhou
- Department of Pharmacology, The First Hospital of Hebei Medical University, Shijiazhuang, Hebei, China
| | - Yun Sun
- t-DCS and r-TMS Center of Tianjin Anding Hospital, Tianjin Mental Health Center of Tianjin Medical University, Tianjin, China
| | - Xinying Chen
- t-DCS and r-TMS Center of Tianjin Anding Hospital, Tianjin Mental Health Center of Tianjin Medical University, Tianjin, China
| | - Ranli Li
- t-DCS and r-TMS Center of Tianjin Anding Hospital, Tianjin Mental Health Center of Tianjin Medical University, Tianjin, China
| | - Jiayue Chen
- Key Laboratory of Real Time Brain Circuit Tracing in Neurology and Psychiatry (RTBNP_Lab), Tianjin Fourth Center Hospital, Tianjin Fourth Central Hospital of Tianjin Medical University, Tianjin, China
| | - Lei Yang
- Key Laboratory of Real Time Brain Circuit Tracing in Neurology and Psychiatry (RTBNP_Lab), Tianjin Fourth Center Hospital, Tianjin Fourth Central Hospital of Tianjin Medical University, Tianjin, China
| | - Qianchen Li
- Key Laboratory of Real Time Brain Circuit Tracing in Neurology and Psychiatry (RTBNP_Lab), Tianjin Fourth Center Hospital, Tianjin Fourth Central Hospital of Tianjin Medical University, Tianjin, China
| | - Qiuyu Zhang
- Key Laboratory of Real Time Brain Circuit Tracing in Neurology and Psychiatry (RTBNP_Lab), Tianjin Fourth Center Hospital, Tianjin Fourth Central Hospital of Tianjin Medical University, Tianjin, China
| | - Yong Xu
- Department of Psychiatry, The First Hospital Affiliated to Shanxi Medical University, Taiyuan, China
| | - Xueqin Song
- Department of Psychiatry, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, Henan, China
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7
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Kamienkowski JE, Varatharajah A, Sigman M, Ison MJ. Parsing a mental program: Fixation-related brain signatures of unitary operations and routines in natural visual search. Neuroimage 2018; 183:73-86. [DOI: 10.1016/j.neuroimage.2018.08.010] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2018] [Revised: 07/24/2018] [Accepted: 08/06/2018] [Indexed: 10/28/2022] Open
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8
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Lindsay GW, Miller KD. How biological attention mechanisms improve task performance in a large-scale visual system model. eLife 2018; 7:e38105. [PMID: 30272560 PMCID: PMC6207429 DOI: 10.7554/elife.38105] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2018] [Accepted: 09/28/2018] [Indexed: 11/13/2022] Open
Abstract
How does attentional modulation of neural activity enhance performance? Here we use a deep convolutional neural network as a large-scale model of the visual system to address this question. We model the feature similarity gain model of attention, in which attentional modulation is applied according to neural stimulus tuning. Using a variety of visual tasks, we show that neural modulations of the kind and magnitude observed experimentally lead to performance changes of the kind and magnitude observed experimentally. We find that, at earlier layers, attention applied according to tuning does not successfully propagate through the network, and has a weaker impact on performance than attention applied according to values computed for optimally modulating higher areas. This raises the question of whether biological attention might be applied at least in part to optimize function rather than strictly according to tuning. We suggest a simple experiment to distinguish these alternatives.
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Affiliation(s)
- Grace W Lindsay
- Center for Theoretical Neuroscience, College of Physicians and SurgeonsColumbia UniversityNew YorkUnited States
- Mortimer B. Zuckerman Mind Brain Behaviour InstituteColumbia UniversityNew YorkUnited States
| | - Kenneth D Miller
- Center for Theoretical Neuroscience, College of Physicians and SurgeonsColumbia UniversityNew YorkUnited States
- Mortimer B. Zuckerman Mind Brain Behaviour InstituteColumbia UniversityNew YorkUnited States
- Swartz Program in Theoretical NeuroscienceKavli Institute for Brain ScienceNew YorkUnited States
- Department of NeuroscienceColumbia UniversityNew YorkUnited States
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9
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van Kerkoerle T, Self MW, Roelfsema PR. Layer-specificity in the effects of attention and working memory on activity in primary visual cortex. Nat Commun 2017; 8:13804. [PMID: 28054544 PMCID: PMC5227065 DOI: 10.1038/ncomms13804] [Citation(s) in RCA: 100] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2015] [Accepted: 11/02/2016] [Indexed: 11/09/2022] Open
Abstract
Neuronal activity in early visual cortex depends on attention shifts but the contribution to working memory has remained unclear. Here, we examine neuronal activity in the different layers of the primary visual cortex (V1) in an attention-demanding and a working memory task. A current-source density analysis reveales top-down inputs in the superficial layers and layer 5, and an increase in neuronal firing rates most pronounced in the superficial and deep layers and weaker in input layer 4. This increased activity is strongest in the attention task but it is also highly reliable during working memory delays. A visual mask erases the V1 memory activity, but it reappeares at a later point in time. These results provide new insights in the laminar circuits involved in the top-down modulation of activity in early visual cortex in the presence and absence of visual stimuli.
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Affiliation(s)
- Timo van Kerkoerle
- Cognitive Neuroimaging Unit, CEA DSV/I2BM, INSERM, Université Paris-Sud, Université Paris-Saclay, NeuroSpin Center, Gif/Yvette 91191, France
| | - Matthew W. Self
- Department of Vision & Cognition, Netherlands Institute for Neurosciences, Meibergdreef 47, Amsterdam 1105 BA, The Netherlands
| | - Pieter R. Roelfsema
- Department of Vision & Cognition, Netherlands Institute for Neurosciences, Meibergdreef 47, Amsterdam 1105 BA, The Netherlands
- Department of Integrative Neurophysiology, Center for Neurogenomics and Cognitive Research, VU University, Amsterdam 1081 HV, The Netherlands
- Psychiatry Department, Academic Medical Center, 1105 AZ Amsterdam, The Netherlands
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10
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Letsou W, Cai L. Noncommutative Biology: Sequential Regulation of Complex Networks. PLoS Comput Biol 2016; 12:e1005089. [PMID: 27560383 PMCID: PMC4999240 DOI: 10.1371/journal.pcbi.1005089] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2016] [Accepted: 07/28/2016] [Indexed: 12/21/2022] Open
Abstract
Single-cell variability in gene expression is important for generating distinct cell types, but it is unclear how cells use the same set of regulatory molecules to specifically control similarly regulated genes. While combinatorial binding of transcription factors at promoters has been proposed as a solution for cell-type specific gene expression, we found that such models resulted in substantial information bottlenecks. We sought to understand the consequences of adopting sequential logic wherein the time-ordering of factors informs the final outcome. We showed that with noncommutative control, it is possible to independently control targets that would otherwise be activated simultaneously using combinatorial logic. Consequently, sequential logic overcomes the information bottleneck inherent in complex networks. We derived scaling laws for two noncommutative models of regulation, motivated by phosphorylation/neural networks and chromosome folding, respectively, and showed that they scale super-exponentially in the number of regulators. We also showed that specificity in control is robust to the loss of a regulator. Lastly, we connected these theoretical results to real biological networks that demonstrate specificity in the context of promiscuity. These results show that achieving a desired outcome often necessitates roundabout steps. DNA is the blueprint of life. Yet the order in which a cell follows these instructions makes it capable of generating thousands of different fates. How this information is extracted from underlying gene regulatory networks is unclear, especially given that biological networks are highly interconnected, and that the number of signaling pathways is relatively small (approximately 5–10). The conventional approach for increasing the information capacity of a limited set of regulators is to use them in combination. Surprisingly, combinatorial logic does not increase the diversity of target configurations or cell fates, but instead causes information bottlenecks. A different approach, called sequential logic, uses noncommutative sequences of a small set of regulators to drive networks to a large number of novel configurations. If certain targets are first protected, then even promiscuous regulators can activate specific subsets of lineage-specific targets. In this paper we show how sequential logic outperforms combinatorial logic, and argue that noncommutative sequences underlie a number of cases of biological regulation, e.g. how a small number of signaling pathways generates a large diversity of cell types in development. In addition to explaining biological networks, sequential logic may be a general experimental design strategy in synthetic and single-cell biology.
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Affiliation(s)
- William Letsou
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, United States of America
| | - Long Cai
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, United States of America
- * E-mail:
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11
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Abstract
Neurons in early visual cortical areas not only represent incoming visual information but are also engaged by higher level cognitive processes, including attention, working memory, imagery, and decision-making. Are these cognitive effects an epiphenomenon or are they functionally relevant for these mental operations? We review evidence supporting the hypothesis that the modulation of activity in early visual areas has a causal role in cognition. The modulatory influences allow the early visual cortex to act as a multiscale cognitive blackboard for read and write operations by higher visual areas, which can thereby efficiently exchange information. This blackboard architecture explains how the activity of neurons in the early visual cortex contributes to scene segmentation and working memory, and relates to the subject's inferences about the visual world. The architecture also has distinct advantages for the processing of visual routines that rely on a number of sequentially executed processing steps.
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Affiliation(s)
- Pieter R Roelfsema
- Netherlands Institute for Neuroscience, 1105 BA Amsterdam, The Netherlands; .,Department of Integrative Neurophysiology, VU University Amsterdam, 1081 HV Amsterdam, The Netherlands.,Psychiatry Department, Academic Medical Center, 1105 AZ Amsterdam, The Netherlands
| | - Floris P de Lange
- Donders Institute for Brain, Cognition and Behavior, Radboud University, 6525 EN Nijmegen, The Netherlands
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12
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van der Togt C, Stănişor L, Pooresmaeili A, Albantakis L, Deco G, Roelfsema PR. Learning a New Selection Rule in Visual and Frontal Cortex. Cereb Cortex 2016; 26:3611-26. [PMID: 27269960 PMCID: PMC4961027 DOI: 10.1093/cercor/bhw155] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023] Open
Abstract
How do you make a decision if you do not know the rules of the game? Models of sensory decision-making suggest that choices are slow if evidence is weak, but they may only apply if the subject knows the task rules. Here, we asked how the learning of a new rule influences neuronal activity in the visual (area V1) and frontal cortex (area FEF) of monkeys. We devised a new icon-selection task. On each day, the monkeys saw 2 new icons (small pictures) and learned which one was relevant. We rewarded eye movements to a saccade target connected to the relevant icon with a curve. Neurons in visual and frontal cortex coded the monkey's choice, because the representation of the selected curve was enhanced. Learning delayed the neuronal selection signals and we uncovered the cause of this delay in V1, where learning to select the relevant icon caused an early suppression of surrounding image elements. These results demonstrate that the learning of a new rule causes a transition from fast and random decisions to a more considerate strategy that takes additional time and they reveal the contribution of visual and frontal cortex to the learning process.
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Affiliation(s)
- Chris van der Togt
- Department of Vision and Cognition, Netherlands Institute for Neuroscience, An Institute of the Royal Netherlands Academy of Arts and Sciences, 1105 BA Amsterdam, The Netherlands
| | - Liviu Stănişor
- Department of Vision and Cognition, Netherlands Institute for Neuroscience, An Institute of the Royal Netherlands Academy of Arts and Sciences, 1105 BA Amsterdam, The Netherlands
| | - Arezoo Pooresmaeili
- Department of Vision and Cognition, Netherlands Institute for Neuroscience, An Institute of the Royal Netherlands Academy of Arts and Sciences, 1105 BA Amsterdam, The Netherlands
| | - Larissa Albantakis
- Madison School of Medicine, Department of Psychiatry, University of Wisconsin, 6001 Research Park Boulevard, Madison, WI 53719, USA
| | - Gustavo Deco
- Dept. de Tecnologies de la Informació i les Comunicacions, Universitat Pompeu Fabra, C\ Tanger, 122-140, 08018 Barcelona, Spain
| | - Pieter R Roelfsema
- Department of Vision and Cognition, Netherlands Institute for Neuroscience, An Institute of the Royal Netherlands Academy of Arts and Sciences, 1105 BA Amsterdam, The Netherlands Department of Integrative Neurophysiology, Centre for Neurogenomics and Cognitive Research, VU University Amsterdam, Amsterdam, The Netherlands Psychiatry Department, Academic Medical Center, 1105 AZ Amsterdam, The Netherlands
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13
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Brosch T, Neumann H, Roelfsema PR. Reinforcement Learning of Linking and Tracing Contours in Recurrent Neural Networks. PLoS Comput Biol 2015; 11:e1004489. [PMID: 26496502 PMCID: PMC4619762 DOI: 10.1371/journal.pcbi.1004489] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2015] [Accepted: 08/05/2015] [Indexed: 11/30/2022] Open
Abstract
The processing of a visual stimulus can be subdivided into a number of stages. Upon stimulus presentation there is an early phase of feedforward processing where the visual information is propagated from lower to higher visual areas for the extraction of basic and complex stimulus features. This is followed by a later phase where horizontal connections within areas and feedback connections from higher areas back to lower areas come into play. In this later phase, image elements that are behaviorally relevant are grouped by Gestalt grouping rules and are labeled in the cortex with enhanced neuronal activity (object-based attention in psychology). Recent neurophysiological studies revealed that reward-based learning influences these recurrent grouping processes, but it is not well understood how rewards train recurrent circuits for perceptual organization. This paper examines the mechanisms for reward-based learning of new grouping rules. We derive a learning rule that can explain how rewards influence the information flow through feedforward, horizontal and feedback connections. We illustrate the efficiency with two tasks that have been used to study the neuronal correlates of perceptual organization in early visual cortex. The first task is called contour-integration and demands the integration of collinear contour elements into an elongated curve. We show how reward-based learning causes an enhancement of the representation of the to-be-grouped elements at early levels of a recurrent neural network, just as is observed in the visual cortex of monkeys. The second task is curve-tracing where the aim is to determine the endpoint of an elongated curve composed of connected image elements. If trained with the new learning rule, neural networks learn to propagate enhanced activity over the curve, in accordance with neurophysiological data. We close the paper with a number of model predictions that can be tested in future neurophysiological and computational studies. Our experience with the visual world allows us to group image elements that belong to the same perceptual object and to segregate them from other objects and the background. If subjects learn to group contour elements, this experience influences neuronal activity in early visual cortical areas, including the primary visual cortex (V1). Learning presumably depends on alterations in the pattern of connections within and between areas of the visual cortex. However, the processes that control changes in connectivity are not well understood. Here we present the first computational model that can train a neural network to integrate collinear contour elements into elongated curves and to trace a curve through the visual field. The new learning algorithm trains fully recurrent neural networks, provided the connectivity causes the networks to reach a stable state. The model reproduces the behavioral performance of monkeys trained in these tasks and explains the patterns of neuronal activity in the visual cortex that emerge during learning, which is remarkable because the only feedback for the model is a reward for successful trials. We discuss a number of the model predictions that can be tested in future neuroscientific work.
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Affiliation(s)
- Tobias Brosch
- University of Ulm, Institute of Neural Information Processing, Ulm, Germany
| | - Heiko Neumann
- University of Ulm, Institute of Neural Information Processing, Ulm, Germany
- * E-mail:
| | - Pieter R. Roelfsema
- Department of Vision & Cognition, Netherlands Institute for Neuroscience (KNAW), Amsterdam, The Netherlands
- Department of Integrative Neurophysiology, Center for Neurogenomics and Cognitive Research, VU University, Amsterdam, The Netherlands
- Psychiatry Department, Academic Medical Center, Amsterdam, The Netherlands
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14
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Lorteije JAM, Zylberberg A, Ouellette BG, De Zeeuw CI, Sigman M, Roelfsema PR. The Formation of Hierarchical Decisions in the Visual Cortex. Neuron 2015; 87:1344-1356. [PMID: 26365766 DOI: 10.1016/j.neuron.2015.08.015] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2015] [Revised: 07/12/2015] [Accepted: 08/07/2015] [Indexed: 01/14/2023]
Abstract
Intelligence relies on our ability to find appropriate sequences of decisions in complex problem spaces. The efficiency of a problem solver depends on the speed of its individual decisions and the number of decisions it can explore in parallel. It remains unknown whether the primate brain can consider multiple decisions at the same time. We therefore trained monkeys to navigate through a decision tree with stochastic sensory evidence at multiple branching points and recorded neuronal activity in visual cortical areas V1 and V4. We found a first phase of decision making in which neuronal activity increased in parallel along multiple branches of the decision tree. This was followed by an integration phase where the optimal overall strategy crystallized as the result of interactions between local decisions. The results reveal how sensory evidence is integrated efficiently for hierarchical decisions and contribute to our understanding of the brain mechanisms that implement complex mental programs.
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Affiliation(s)
- Jeannette A M Lorteije
- Department of Vision and Cognition, Netherlands Institute for Neuroscience, Royal Netherlands Academy of Arts and Sciences, Meibergdreef 47, 1105 BA Amsterdam, the Netherlands; Center for Neuroscience, Swammerdam Institute for Life Sciences, Faculty of Science, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, the Netherlands
| | - Ariel Zylberberg
- Department of Vision and Cognition, Netherlands Institute for Neuroscience, Royal Netherlands Academy of Arts and Sciences, Meibergdreef 47, 1105 BA Amsterdam, the Netherlands; Laboratory of Integrative Neuroscience, Physics Department, Buenos Aires University, Intendente Güiraldes 2160, 1428 Buenos Aires, Argentina; Institute of Biomedical Engineering, Faculty of Engineering, Buenos Aires University, Avenue Paseo Colón 850, 1063 Buenos Aires, Argentina; Laboratory of Applied Artificial Intelligence, Computer Science Department, Facultad de Ciencias Exactas y Naturales, Buenos Aires University, Intendente Güiraldes 2160, 1428 Buenos Aires, Argentina
| | - Brian G Ouellette
- Department of Vision and Cognition, Netherlands Institute for Neuroscience, Royal Netherlands Academy of Arts and Sciences, Meibergdreef 47, 1105 BA Amsterdam, the Netherlands
| | - Chris I De Zeeuw
- Cerebellar Coordination and Cognition Group, Netherlands Institute for Neuroscience, Royal Netherlands Academy of Arts and Sciences, Meibergdreef 47, 1105 BA Amsterdam, the Netherlands; Department of Neuroscience, Erasmus Medical Center, Wytemaweg 80, 3015 CN Rotterdam, the Netherlands
| | - Mariano Sigman
- Laboratory of Integrative Neuroscience, Physics Department, Buenos Aires University, Intendente Güiraldes 2160, 1428 Buenos Aires, Argentina; Universidad Torcuato Di Tella, Almirante Juan Saenz Valiente 1010, C1428BIJ Buenos Aires, Argentina
| | - Pieter R Roelfsema
- Department of Vision and Cognition, Netherlands Institute for Neuroscience, Royal Netherlands Academy of Arts and Sciences, Meibergdreef 47, 1105 BA Amsterdam, the Netherlands; Department of Integrative Neurophysiology, Vrije Universiteit Amsterdam, De Boelelaan 1085, 1081 HV Amsterdam, the Netherlands; Psychiatry Department, Academic Medical Center, 1105 AC Amsterdam, the Netherlands.
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15
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Belief states as a framework to explain extra-retinal influences in visual cortex. Curr Opin Neurobiol 2015; 32:45-52. [DOI: 10.1016/j.conb.2014.10.013] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2014] [Revised: 10/24/2014] [Accepted: 10/26/2014] [Indexed: 12/13/2022]
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16
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Khayat PS, Martinez-Trujillo JC. Effects of attention and distractor contrast on the responses of middle temporal area neurons to transient motion direction changes. Eur J Neurosci 2015; 41:1603-13. [PMID: 25885809 DOI: 10.1111/ejn.12920] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2014] [Revised: 04/11/2015] [Accepted: 04/14/2015] [Indexed: 11/26/2022]
Abstract
The ability of primates to detect transient changes in a visual scene can be influenced by the allocation of attention, as well as by the presence of distractors. We investigated the neural substrates of these effects by recording the responses of neurons in the middle temporal area (MT) of two monkeys while they detected a transient motion direction change in a moving target. We found that positioning a distractor near the target impaired the change-detection performance of the animals. This impairment monotonically decreased as the distractor's contrast decreased. A neural correlate of this effect was a decrease in the ability of MT neurons to signal the direction change (detection sensitivity or DS) when a distractor was near the target, both located inside the neuron's receptive field. Moreover, decreasing distractor contrast increased neuronal DS. On the other hand, directing attention away from the target decreased neuronal DS. At the level of individual neurons, we found a negative correlation between the degree of response normalization and the DS. Finally, the intensity of a neuron's response to the change was predictive of the animal's reaction time, suggesting that the activity of our recorded neurons was linked to the animal's detection performance. Our results suggest that the ability of an MT neuron to signal a transient direction change is regulated by the degree of inhibitory drive into the cell. The presence of distractors, their contrast and the allocation of attention influence such inhibitory drive, therefore modulating the ability of the neurons to signal transient changes in stimulus features and consequently behavioral performance.
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Affiliation(s)
- Paul S Khayat
- Cognitive Neurophysiology Laboratory, Department of Physiology, McGill University, 3655 Prom. Sir. W. Osler, Montreal, QC, H3G 1Y6, Canada
| | - Julio C Martinez-Trujillo
- Cognitive Neurophysiology Laboratory, Department of Physiology, McGill University, 3655 Prom. Sir. W. Osler, Montreal, QC, H3G 1Y6, Canada
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17
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Simultaneous selection by object-based attention in visual and frontal cortex. Proc Natl Acad Sci U S A 2014; 111:6467-72. [PMID: 24711379 DOI: 10.1073/pnas.1316181111] [Citation(s) in RCA: 47] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Models of visual attention hold that top-down signals from frontal cortex influence information processing in visual cortex. It is unknown whether situations exist in which visual cortex actively participates in attentional selection. To investigate this question, we simultaneously recorded neuronal activity in the frontal eye fields (FEF) and primary visual cortex (V1) during a curve-tracing task in which attention shifts are object-based. We found that accurate performance was associated with similar latencies of attentional selection in both areas and that the latency in both areas increased if the task was made more difficult. The amplitude of the attentional signals in V1 saturated early during a trial, whereas these selection signals kept increasing for a longer time in FEF, until the moment of an eye movement, as if FEF integrated attentional signals present in early visual cortex. In erroneous trials, we observed an interareal latency difference because FEF selected the wrong curve before V1 and imposed its erroneous decision onto visual cortex. The neuronal activity in visual and frontal cortices was correlated across trials, and this trial-to-trial coupling was strongest for the attended curve. These results imply that selective attention relies on reciprocal interactions within a large network of areas that includes V1 and FEF.
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18
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Zylberberg AD, Paz L, Roelfsema PR, Dehaene S, Sigman M. A neuronal device for the control of multi-step computations. PAPERS IN PHYSICS 2013. [DOI: 10.4279/pip.050006] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022] Open
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19
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Albers A, Kok P, Toni I, Dijkerman H, de Lange F. Shared Representations for Working Memory and Mental Imagery in Early Visual Cortex. Curr Biol 2013; 23:1427-31. [DOI: 10.1016/j.cub.2013.05.065] [Citation(s) in RCA: 293] [Impact Index Per Article: 26.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2013] [Revised: 05/10/2013] [Accepted: 05/31/2013] [Indexed: 11/15/2022]
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20
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From a single decision to a multi-step algorithm. Curr Opin Neurobiol 2012; 22:937-45. [DOI: 10.1016/j.conb.2012.05.006] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2012] [Revised: 05/18/2012] [Accepted: 05/18/2012] [Indexed: 11/23/2022]
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21
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22
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The functional link between area MT neural fluctuations and detection of a brief motion stimulus. J Neurosci 2011; 31:13458-68. [PMID: 21940439 DOI: 10.1523/jneurosci.1347-11.2011] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Fluctuations of neural firing rates in visual cortex are known to be correlated with variations in perceptual performance. It is important to know whether these fluctuations are functionally linked to perception in a causal manner or instead reflect non-causal processes that arise after the perceptual decision is made. We recorded from middle temporal (MT) neurons from monkey subjects while they detected the random occurrence of a brief 50 ms motion pulse that occurred in either of two (or simultaneously in both) random dot patches located in the same hemisphere. The receptive field parameters of the motion pulse were matched to that preferred by each MT neuron under study. This task contained uncertainty in both space and time because, on any given trial, the subjects did not know which patch would contain the motion pulse or when the motion pulse would occur. Covariations between MT activity and behavior began just before the motion pulse onset and peaked at the maximum neural response. These neural-behavioral covariations were strongest when only one patch contained the motion pulse and were still weakly present when a patch did not contain a motion pulse. A feedforward temporal integration model with two independent detector channels captured both the detection performance and evolution of the neural-behavior covariations over time and stimulus condition. The results suggest that, when detecting a brief visual stimulus, there is a causal relationship between fluctuations in neural activity and variations in behavior across trials.
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23
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Affiliation(s)
- Pieter R Roelfsema
- Department of Vision and Cognition, Netherlands Institute for Neuroscience, Royal Netherlands Academy of Arts and Sciences, Amsterdam, Netherlands.
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24
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Zylberberg A, Dehaene S, Roelfsema PR, Sigman M. The human Turing machine: a neural framework for mental programs. Trends Cogn Sci 2011; 15:293-300. [PMID: 21696998 DOI: 10.1016/j.tics.2011.05.007] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2011] [Revised: 05/16/2011] [Accepted: 05/17/2011] [Indexed: 10/18/2022]
Abstract
In recent years much has been learned about how a single computational processing step is implemented in the brain. By contrast, we still have surprisingly little knowledge of the neuronal mechanisms by which multiple such operations are sequentially assembled into mental algorithms. We outline a theory of how individual neural processing steps might be combined into serial programs. We propose a hybrid neuronal device: each step involves massively parallel computation that feeds a slow and serial production system. Production selection is mediated by a system of competing accumulator neurons that extends the role of these neurons beyond the selection of a motor action. Productions change the state of sensory and mnemonic neurons and iteration of such cycles provides a basis for mental programs.
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Affiliation(s)
- Ariel Zylberberg
- Laboratory of Integrative Neuroscience, Physics Department, FCEyN UBA and IFIBA, Conicet, Pabellón 1, Ciudad Universitaria, 1428 Buenos Aires, Argentina
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25
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Olivers CNL, Peters J, Houtkamp R, Roelfsema PR. Different states in visual working memory: when it guides attention and when it does not. Trends Cogn Sci 2011; 15:327-34. [PMID: 21665518 DOI: 10.1016/j.tics.2011.05.004] [Citation(s) in RCA: 263] [Impact Index Per Article: 20.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2011] [Revised: 05/04/2011] [Accepted: 05/05/2011] [Indexed: 10/18/2022]
Abstract
Recent studies have revealed a strong relationship between visual working memory and selective attention, such that attention is biased by what is currently on our mind. However, other data show that not all memorized items influence the deployment of attention, thus calling for a distinction within working memory: whereas active memory items function as an attentional template and directly affect perception, other, accessory items do not. We review recent evidence that items compete for the status of 'attentional template' that contains only one object at a time. Neurophysiological results provide insight into these different memory states by revealing a more intricate organization of working memory than was previously thought.
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Affiliation(s)
- Christian N L Olivers
- Department of Cognitive Psychology, Vrije Universiteit Amsterdam, Van der Boechorststraat 1, 1081 BT Amsterdam, The Netherlands
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