1
|
Palencia-Madrid L, Baeta M, Kleinbielen T, Toro-Delgado N, Villaescusa P, Sanchez-Bustamante E, de Pancorbo MM, Luis JR, Ware KE, Somarelli JA, Garcia-Bertrand R, Herrera RJ. Post-Austronesian migrational wave of West Polynesians to Micronesia. Gene 2022; 823:146357. [PMID: 35189246 DOI: 10.1016/j.gene.2022.146357] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2021] [Revised: 01/21/2022] [Accepted: 02/16/2022] [Indexed: 11/29/2022]
Abstract
This study examines Y-chromosome and mtDNA markers in the population of the island of Kiritimati in the context of geographically targeted reference populations from the Pacific. Kiritimati derives its population from the atoll islands of the Gilbert Archipelago and representsa geographicaltransitional region between Micronesia, Polynesia and Melanesia that likely played a critical role during theAustronesian expansion. The large presence(84.1%)of individuals withO-M175, O2a-M324 and O2a2b-P164 sub-haplogroups, 69.9% being O2a2b-P164, the Y-STR homogeneity within O2a2b-P164 and the very recent age of the sub-haplogroup(363-548 years ago)inKiritimati suggestthe arrival ofa genetically homogenous population to the Gilberteses followed by a population expassion.The close Y-STR haplotype affinities with profiles from the Samoa and Tonga Archipelagos point to an unprecedented massive post-Austronesian expansionexodus from West Polynesia.Contrasting the abundance of AustronesianO2a2b-P164 sub-haplogroup, the most abundantMelanesian/Papuansub-haplogroup,C-M130is present at a frequency of 13.5%. Thenetwork topology suggests that C-M130 arrived to theKiribati Archipelago from West Polynesia, specifically from West Samoa, Tonga and/or Tutuila subsequent to the Austronesian expansion about 832-1408 years ago. The haplotype affinities withinO2a2b-P164 argue for anoriginal source in Taiwan and its dispersal to West Polynesia and then to Southeast Micronesia. The present investigation provides an understanding of the genetic composition and complex migration history of an understudied region of the Pacific and provides evidence for recent dispersals towards Micronesia from West Polynesia subsequent to the initial Austronesian expansion.
Collapse
Affiliation(s)
- Leire Palencia-Madrid
- BIOMICs Research Group, Dpto. Z. y Biologia Celular A., Lascaray Research Centre, University of the Basque Country UPV/EHU, 01006 Vitoria-Gasteiz, Spain
| | - Miriam Baeta
- BIOMICs Research Group, Dpto. Z. y Biologia Celular A., Lascaray Research Centre, University of the Basque Country UPV/EHU, 01006 Vitoria-Gasteiz, Spain
| | - Tamara Kleinbielen
- BIOMICs Research Group, Dpto. Z. y Biologia Celular A., Lascaray Research Centre, University of the Basque Country UPV/EHU, 01006 Vitoria-Gasteiz, Spain
| | - Nerea Toro-Delgado
- BIOMICs Research Group, Dpto. Z. y Biologia Celular A., Lascaray Research Centre, University of the Basque Country UPV/EHU, 01006 Vitoria-Gasteiz, Spain
| | - Patricia Villaescusa
- BIOMICs Research Group, Dpto. Z. y Biologia Celular A., Lascaray Research Centre, University of the Basque Country UPV/EHU, 01006 Vitoria-Gasteiz, Spain
| | - Elena Sanchez-Bustamante
- BIOMICs Research Group, Dpto. Z. y Biologia Celular A., Lascaray Research Centre, University of the Basque Country UPV/EHU, 01006 Vitoria-Gasteiz, Spain
| | - Marian M de Pancorbo
- BIOMICs Research Group, Dpto. Z. y Biologia Celular A., Lascaray Research Centre, University of the Basque Country UPV/EHU, 01006 Vitoria-Gasteiz, Spain
| | - Javier Rodriguez Luis
- Area de Antropología, Facultad de Biología, Universidad de Santiago de Compostela, Campus Sur s/n, 15782 Santiago de Compostela, Spain
| | - Kathryn E Ware
- Department of Medicine, Duke University Medical Center, Duke Cancer Institute, Durham, NC 27710, USA
| | - Jason A Somarelli
- Department of Medicine, Duke University Medical Center, Duke Cancer Institute, Durham, NC 27710, USA
| | | | - Rene J Herrera
- Department of Molecular Biology, Colorado College, Colorado Springs, CO 80903, USA.
| |
Collapse
|
2
|
Evolution and molecular epidemiology of polyomaviruses. INFECTION GENETICS AND EVOLUTION 2019; 79:104150. [PMID: 31870972 DOI: 10.1016/j.meegid.2019.104150] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2019] [Revised: 12/17/2019] [Accepted: 12/19/2019] [Indexed: 02/08/2023]
Abstract
Polyomaviruses (PyVs) are small DNA viruses that infect several species, including mammals, birds and fishes. Their study gained momentum after the report of previously unidentified viral species in the past decade, and especially, since the description of the first polyomavirus clearly oncogenic for humans. The aim of this work was to review the most relevant aspects of the evolution and molecular epidemiology of polyomaviruses, allowing to reveal general evolutionary patterns and to identify some unaddressed issues and future challenges. The main points analysed included: 1) the species and genera assignation criteria; 2) the hypotheses, mechanisms and timescale of the ancient and recent evolutionary history of polyomaviruses; and 3) the molecular epidemiology of human viruses, with special attention to JC, BK and Merkel cell polyomaviruses.
Collapse
|
3
|
IKEGAYA HIROSHI, SHAN ZHONG, SHIMIZU HANA, SEKIYAMA MAKIKO, SOEMANTRI AUGUSTINUS, ISHIDA TAKAFUMI, NAKAZAWA MINATO, OHTSUKA RYUTARO, TAKASAKA TOMOKAZU, SHIBUYA AYAKO, KITAMURA TADAICHI, YOGO YOSHIAKI. The Pacific lineage (2E) of JC polyomavirus is prevalent in Sumba Island, Eastern Indonesia. ANTHROPOL SCI 2008. [DOI: 10.1537/ase.070529] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/01/2022]
Affiliation(s)
- HIROSHI IKEGAYA
- Department of Forensic Medicine, Graduate School of Medicine, The University of Tokyo
| | - ZHONG SHAN
- Department of Urology, Faculty of Medicine, The University of Tokyo
| | - HANA SHIMIZU
- Department of Human Ecology, School of International Health, Graduate School of Medicine, The University of Tokyo
| | - MAKIKO SEKIYAMA
- Transdisciplinary Initiative for Global Sustainability (TIGS), Integrated Research System for Sustainability Science (IR3S), The University of Tokyo
| | | | - TAKAFUMI ISHIDA
- Unit of Human Biology and Genetics, Department of Biological Sciences, Graduate School of Science, The University of Tokyo
| | - MINATO NAKAZAWA
- Gunma University Graduate School of Medicine, Department of Socio-Environmental Medicine, Public Health Division
| | | | | | - AYAKO SHIBUYA
- Department of Urology, Faculty of Medicine, The University of Tokyo
| | | | - YOSHIAKI YOGO
- Department of Urology, Faculty of Medicine, The University of Tokyo
| |
Collapse
|
4
|
ZHENG HUAIYING, TAKASAKA TOMOKAZU, OHNO NORIKAZU, SUGIMOTO CHIE, KITAMURA TADAICHI, YOGO YOSHIAKI. Human dispersals based on a global phylogenetic analysis of JC virus isolates of genotype B1-b. ANTHROPOL SCI 2007. [DOI: 10.1537/ase.061017] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/01/2022]
Affiliation(s)
- HUAI-YING ZHENG
- Department of Urology, Faculty of Medicine, The University of Tokyo
| | | | - NORIKAZU OHNO
- Department of First Anatomy, School of Dentistry, Aichi-Gakuin University
| | - CHIE SUGIMOTO
- AIDS Research Center, National Institute of Infectious Diseases, Tokyo
- Tsukuba Primate Research Center, National Institute of Biomedical Innovation
| | | | - YOSHIAKI YOGO
- Department of Urology, Faculty of Medicine, The University of Tokyo
| |
Collapse
|
5
|
SARUWATARI LEI, ZHENG HUAIYING, IKEGAYA HIROSHI, TAKASAKA TOMOKAZU, GUO JING, KITAMURA TADAICHI, YOGO YOSHIAKI, OHNO NORIKAZU. Dispersal of southeastern Asians based on a global phylogenetic analysis of JC polyomavirus isolates of genotype SC. ANTHROPOL SCI 2006. [DOI: 10.1537/ase.050629] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/01/2022]
Affiliation(s)
- LEI SARUWATARI
- Department of Anatomy, School of Dentistry, Aichi-Gakuin University
| | - HUAI-YING ZHENG
- Department of Urology, Faculty of Medicine, The University of Tokyo
- Japanese Foundation for AIDS Prevention
| | | | | | - JING GUO
- Department of Biochemistry, University of Alberta
| | | | - YOSHIAKI YOGO
- Department of Urology, Faculty of Medicine, The University of Tokyo
| | - NORIKAZU OHNO
- Department of Anatomy, School of Dentistry, Aichi-Gakuin University
| |
Collapse
|