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Kadela-Tomanek M, Jastrzębska M, Marciniec K, Chrobak E, Bębenek E, Boryczka S. Lipophilicity, Pharmacokinetic Properties, and Molecular Docking Study on SARS-CoV-2 Target for Betulin Triazole Derivatives with Attached 1,4-Quinone. Pharmaceutics 2021; 13:pharmaceutics13060781. [PMID: 34071116 PMCID: PMC8224687 DOI: 10.3390/pharmaceutics13060781] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2021] [Revised: 05/19/2021] [Accepted: 05/20/2021] [Indexed: 12/22/2022] Open
Abstract
A key parameter in the design of new active compounds is lipophilicity, which influences the solubility and permeability through membranes. Lipophilicity affects the pharmacodynamic and toxicological profiles of compounds. These parameters can be determined experimentally or by using different calculation methods. The aim of the research was to determine the lipophilicity of betulin triazole derivatives with attached 1,4-quinone using thin layer chromatography in a reverse phase system and a computer program to calculate its theoretical model. The physiochemical and pharmacokinetic properties were also determined by computer programs. For all obtained parameters, the similarity analysis and multilinear regression were determined. The analyses showed that there is a relationship between structure and properties under study. The molecular docking study showed that betulin triazole derivatives with attached 1,4-quinone could inhibit selected SARS-CoV-2 proteins. The MLR regression showed that there is a correlation between affinity scoring values (ΔG) and the physicochemical properties of the tested compounds.
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Affiliation(s)
- Monika Kadela-Tomanek
- Department of Organic Chemistry, Faculty of Pharmaceutical Sciences in Sosnowiec, Medical University of Silesia, Katowice, 4 Jagiellońska Str., 41-200 Sosnowiec, Poland; (K.M.); (E.C.); (E.B.); (S.B.)
- Correspondence: ; Tel.: +48-32-3641666
| | - Maria Jastrzębska
- Silesian Center for Education and Interdisciplinary Research, Institute of Physics, University of Silesia, 75 Pułku Piechoty 1a, 41-500 Chorzów, Poland;
| | - Krzysztof Marciniec
- Department of Organic Chemistry, Faculty of Pharmaceutical Sciences in Sosnowiec, Medical University of Silesia, Katowice, 4 Jagiellońska Str., 41-200 Sosnowiec, Poland; (K.M.); (E.C.); (E.B.); (S.B.)
| | - Elwira Chrobak
- Department of Organic Chemistry, Faculty of Pharmaceutical Sciences in Sosnowiec, Medical University of Silesia, Katowice, 4 Jagiellońska Str., 41-200 Sosnowiec, Poland; (K.M.); (E.C.); (E.B.); (S.B.)
| | - Ewa Bębenek
- Department of Organic Chemistry, Faculty of Pharmaceutical Sciences in Sosnowiec, Medical University of Silesia, Katowice, 4 Jagiellońska Str., 41-200 Sosnowiec, Poland; (K.M.); (E.C.); (E.B.); (S.B.)
| | - Stanisław Boryczka
- Department of Organic Chemistry, Faculty of Pharmaceutical Sciences in Sosnowiec, Medical University of Silesia, Katowice, 4 Jagiellońska Str., 41-200 Sosnowiec, Poland; (K.M.); (E.C.); (E.B.); (S.B.)
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A TLC Study of the lipophilicity of thirty-two acetylcholinesterase inhibitors — 1,2,3,4-tetrahydroacridine and 2,3-dihydro-1H-cyclopenta[b]quinoline derivatives. OPEN CHEM 2013. [DOI: 10.2478/s11532-013-0218-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
AbstractThe lipophilicity of thirty-two novel acetylcholinesterase (AChE) inhibitors — 1,2,3,4-tetrahydroacridine and 2,3-dihydro-1H-cyclopenta[b]quinoline derivatives was studied by thin layer chromatography. The analyzed compounds were chromatographed on RP-18, RP-8, RP-2, CN and NH2 stationary phases with dioxane — citric buffer pH 3.0 binary mobile phases containing different proportions of dioxane. RM values for pure water were extrapolated from the linear Soczewiński-Wachtmeister equation and six compounds with known literature log P values were used as reference calibration data set for computation of experimental log P values. The obtained results were compared with computationally calculated partition coefficients values (AlogPs, AClogP, AlogP, MlogP, KOWWIN, XlogP2, XlogP3) by PCA and significant differences between them were observed.
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Paszkowska J, Kania B, Wandzik I. EVALUATION OF THE LIPOPHILICTY OF SELECTED URIDINE DERIVATIVES BY USE OF RP-TLC, SHAKE-FLASK, AND COMPUTATIONAL METHODS. J LIQ CHROMATOGR R T 2012. [DOI: 10.1080/10826076.2011.619030] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Affiliation(s)
- Jadwiga Paszkowska
- a Faculty of Chemistry, Department of Organic Chemistry, Bioorganic Chemistry and Biotechnology , Silesian University of Technology , Gliwice , Poland
| | - Beata Kania
- a Faculty of Chemistry, Department of Organic Chemistry, Bioorganic Chemistry and Biotechnology , Silesian University of Technology , Gliwice , Poland
| | - Ilona Wandzik
- a Faculty of Chemistry, Department of Organic Chemistry, Bioorganic Chemistry and Biotechnology , Silesian University of Technology , Gliwice , Poland
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Skibiński R, Sławik T, Kaczkowska M. Reversed-phase TLC study of the lipophilicity of fourteen 1,3-benzoxazol-2(3H)-one derivatives and comparison with isomeric 1,2-benzisoxazol-3(2H)-one analogs. JPC-J PLANAR CHROMAT 2011. [DOI: 10.1556/jpc.24.2011.4.14] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Petrlíková E, Waisser K. A TLC study of the lipophilicity of new antimycobacterial active benzoxazine derivatives containing a thioxo group. JPC-J PLANAR CHROMAT 2011. [DOI: 10.1556/jpc.24.2011.3.3] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Pyka A, Rusek D, Bocheńska P, Gurak D. USE OF RP-TLC AND THEORETICAL COMPUTATIONAL METHODS TO COMPARE THE LIPOPHILICITY OF SALICYLIC ACID AND ITS DERIVATIVES. J LIQ CHROMATOGR R T 2009. [DOI: 10.1080/10826070903439309] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- Alina Pyka
- a Department of Analytical Chemistry, Faculty of Pharmacy , Medical University of Silesia , Sosnowiec , Poland
| | - Dominika Rusek
- a Department of Analytical Chemistry, Faculty of Pharmacy , Medical University of Silesia , Sosnowiec , Poland
| | - Paulina Bocheńska
- a Department of Analytical Chemistry, Faculty of Pharmacy , Medical University of Silesia , Sosnowiec , Poland
| | - Danuta Gurak
- a Department of Analytical Chemistry, Faculty of Pharmacy , Medical University of Silesia , Sosnowiec , Poland
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