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Mondal P, Ishigami I, Yeh SR, Wijeratne GB. The Role of Heme Peroxo Oxidants in the Rational Mechanistic Modeling of Nitric Oxide Synthase: Characterization of Key Intermediates and Elucidation of the Mechanism. Angew Chem Int Ed Engl 2022; 61:e202211521. [PMID: 36169890 PMCID: PMC9675724 DOI: 10.1002/anie.202211521] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2022] [Indexed: 11/08/2022]
Abstract
Mammalian nitric oxide synthase (NOS) mediates the two-step O2 -dependent oxidative degradation of arginine, and has been linked to a medley of disease situations in humans. Nonetheless, its exact mechanism of action still remains unclear. This work presents the first NOS model system where biologically proposed heme superoxo and peroxo intermediates are assessed as active oxidants against oxime substrates. Markedly, heme peroxo intermediates engaged in a bioinspired oxime oxidation reaction pathway, converting oximes to ketones and nitroxyl anions (NO- ). Detailed thermodynamic, kinetic, and mechanistic interrogations all evince a rate-limiting step primarily driven by the nucleophilicity of the heme peroxo moiety. Coherent with other findings, 18 O and 15 N isotope substitution experiments herein suffice compelling evidence toward a detailed mechanism, which draw close parallels to one of the enzymatic proposals. Intriguingly, recent enzymatic studies also lend credence to these findings, and several relevant reaction intermediates have been observed during NOS turnover.
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Affiliation(s)
- Pritam Mondal
- Department of Chemistry and O'Neal Comprehensive Cancer Center, University of Alabama at Birmingham, Birmingham, AL 35205, USA
| | - Izumi Ishigami
- Department of Physiology and Biophysics, Albert Einstein College of Medicine, The Bronx, NY 10461, USA
| | - Syun-Ru Yeh
- Department of Physiology and Biophysics, Albert Einstein College of Medicine, The Bronx, NY 10461, USA
| | - Gayan B Wijeratne
- Department of Chemistry and O'Neal Comprehensive Cancer Center, University of Alabama at Birmingham, Birmingham, AL 35205, USA
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Tran T, Nguyen A, Torres D, Pham MT, Petit AS. Computational Investigation of the Formation of Substituted Isoindole N-Oxides through the Photo-oxidative Cyclization of 2'-Alkynylacetophenone Oximes. J Org Chem 2021; 86:15020-15032. [PMID: 34668707 DOI: 10.1021/acs.joc.1c01715] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Our recently published joint experiment-theory study of the photo-oxidative intramolecular cyclization of 2'-alkynylacetophenone oximes, performed in collaboration with the de Lijser group, presented the first reported formation of isoindole N-oxides. That study focused on determining a mechanistic explanation for the unexpected chemistry observed when three 2'-alkynylacetophenone oximes were photo-oxidized with 9,10-dicyanoanthracene (DCA), specifically the derivatives with a phenyl, isopropyl, or n-butyl substituent at the alkynyl group. Here, we use density functional theory to develop a broader understanding of the scope of this chemistry. In particular, we demonstrate that substituents on the alkynyl group and on the central benzene ring can significantly modulate the thermodynamic driving force for oxime radical cation generation when DCA is used as the photosensitizer. In contrast, substituents are shown to have a small impact on the chemical reactivity of the radical cation intermediates. In particular, 5-exo radical cation cyclization, which ultimately results in an isoindole N-oxide product, is always kinetically and sometimes also thermodynamically preferred over 6-endo radical cation cyclization, which would produce an isoquinoline N-oxide product. Overall, this study provides mechanistic insights into the diversity of isoindole N-oxides that can be produced through the photo-oxidative cyclization of 2'-alkynylacetophenone oximes.
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Affiliation(s)
- Thao Tran
- Department of Chemistry and Biochemistry, California State University - Fullerton, Fullerton, California 92834-6866, United States
| | - Anh Nguyen
- Department of Chemistry and Biochemistry, California State University - Fullerton, Fullerton, California 92834-6866, United States
| | - Danielle Torres
- Department of Chemistry and Biochemistry, California State University - Fullerton, Fullerton, California 92834-6866, United States
| | - My Tien Pham
- Department of Chemistry and Biochemistry, California State University - Fullerton, Fullerton, California 92834-6866, United States
| | - Andrew S Petit
- Department of Chemistry and Biochemistry, California State University - Fullerton, Fullerton, California 92834-6866, United States
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3
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Kim WS, Espinoza Castro VM, Abiad A, Ko M, Council A, Nguyen A, Marsalla L, Lee V, Tran T, Petit AS, de Lijser HJP. Mechanistic Investigation of the Formation of Isoindole N-Oxides in the Electron Transfer-Mediated Oxidative Cyclization of 2'-Alkynylacetophenone Oximes. J Org Chem 2021; 86:693-708. [PMID: 33337137 DOI: 10.1021/acs.joc.0c02318] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
This paper describes a joint experiment-theory investigation of the formation and cyclization of 2'-alkynylacetophenone oxime radical cations using photoinduced electron transfer (PET) with DCA as the photosensitizer. Using a combination of experimental 1H and 13C nuclear magnetic resonance (NMR) spectra, high-resolution mass spectrometry, and calculated NMR chemical shifts, we identified the products to be isoindole N-oxides. The reaction was found to be stereoselective; only one of the two possible stereoisomers is formed under these conditions. A detailed computational investigation of the cyclization reaction mechanism suggests facile C-N bond formation in the radical cation leading to a 5-exo intermediate. Back-electron transfer from the DCA radical anion followed by barrierless intramolecular proton transfer leads to the final product. We argue that the final proton transfer step in the mechanism is responsible for the stereoselectivity observed in experiment. As a whole, this work provides new insights into the formation of complex heterocycles through oxime and oxime ether radical cation intermediates produced via PET. Moreover, it represents the first reported formation of isoindole N-oxides.
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Affiliation(s)
- Wan Shin Kim
- Department of Chemistry and Biochemistry, California State University, Fullerton, California 92834-6866, United States
| | - Victor M Espinoza Castro
- Department of Chemistry and Biochemistry, California State University, Fullerton, California 92834-6866, United States
| | - Amanda Abiad
- Department of Chemistry and Biochemistry, California State University, Fullerton, California 92834-6866, United States
| | - Michael Ko
- Department of Chemistry and Biochemistry, California State University, Fullerton, California 92834-6866, United States
| | - Ashley Council
- Department of Chemistry and Biochemistry, California State University, Fullerton, California 92834-6866, United States
| | - Anh Nguyen
- Department of Chemistry and Biochemistry, California State University, Fullerton, California 92834-6866, United States
| | - Laura Marsalla
- Department of Chemistry and Biochemistry, California State University, Fullerton, California 92834-6866, United States
| | - Vicky Lee
- Department of Chemistry and Biochemistry, California State University, Fullerton, California 92834-6866, United States
| | - Thao Tran
- Department of Chemistry and Biochemistry, California State University, Fullerton, California 92834-6866, United States
| | - Andrew S Petit
- Department of Chemistry and Biochemistry, California State University, Fullerton, California 92834-6866, United States
| | - H J Peter de Lijser
- Department of Chemistry and Biochemistry, California State University, Fullerton, California 92834-6866, United States
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4
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Hofstra JL, Grassbaugh BR, Tran QM, Armada NR, de Lijser HJP. Catalytic Oxidative Cyclization of 2'-Arylbenzaldehyde Oxime Ethers under Photoinduced Electron Transfer Conditions. J Org Chem 2014; 80:256-65. [PMID: 25437898 DOI: 10.1021/jo502324z] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
A series of 2'-arylbenzaldehyde oxime ethers were synthesized and shown to generate the corresponding phenanthridines upon irradiation in the presence of 9,10-dicyanoanthracene in acetonitrile. Mechanistic studies suggest that the oxidative cyclization reaction sequence is initiated by an electron transfer step followed by nucleophilic attack of the aryl ring onto the nitrogen of the oxime ether. A concave downward Hammett plot is presumably the result of a change in charge distribution in the radical cation species with strongly electron-donating substituents that yields a less electrophilic nitrogen atom and a decreased amount of cyclized product. The reaction is selective (no nitrile byproduct is formed unlike other photochemical reactions involving aldoxime ethers) as well as regiospecific when using 2'-aryl groups with meta-substituents, making this reaction a useful alternative for preparing substituted phenanthridines.
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Affiliation(s)
- Julie L Hofstra
- Department of Chemistry and Biochemistry, California State University, Fullerton, California 92834-6866, United States
| | - Brittany R Grassbaugh
- Department of Chemistry and Biochemistry, California State University, Fullerton, California 92834-6866, United States
| | - Quan M Tran
- Department of Chemistry and Biochemistry, California State University, Fullerton, California 92834-6866, United States
| | - Nicholas R Armada
- Department of Chemistry and Biochemistry, California State University, Fullerton, California 92834-6866, United States
| | - H J Peter de Lijser
- Department of Chemistry and Biochemistry, California State University, Fullerton, California 92834-6866, United States
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de Lijser HJP, Burke CR, Rosenberg J, Hunter J. Highly efficient formation of nitriles and alkoxy radicals from N-alkoxybenziminoyl chlorides in solution. J Org Chem 2009; 74:1679-84. [PMID: 19146448 DOI: 10.1021/jo8026142] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A series of N-alkoxybenziminoyl chlorides were synthesized and reacted with tributyltin hydride in the presence of AIBN to generate the corresponding N-alkoxybenziminoyl radicals. This methodology successfully generates the desired radicals, which undergo a rapid and highly efficient beta-scission reaction, as shown by the formation of the corresponding nitriles and products derived from alkoxy radicals. The intermediate N-alkoxybenziminoyl radical could not be trapped by employing high concentrations of Bu(3)SnH or by using a hydrogen atom donating solvent such as toluene. The fast beta-scission reaction was found to be independent of the structure of the iminoyl chloride. These results are different from studies on the similar N-alkyliminoyl radicals, which typically give products from both beta-scission hydrogen atom transfer pathways. Using the data from this study as well as some reported rate constants for different hydrogen atom transfer (HAT) processes, we conclude that the lower limit for the rate constant for the beta-scission process (k(beta)) in N-alkoxybenziminoyl radicals is 2.5 x 10(7) s(-1).
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Affiliation(s)
- H J Peter de Lijser
- Department of Chemistry and Biochemistry, California State University, Fullerton, California 92834-6866, USA.
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Tang W, Stearns RA, Wang RW, Miller RR, Chen Q, Ngui J, Bakshi RK, Nargund RP, Dean DC, Baillie TA. Assessing and minimizing time-dependent inhibition of cytochrome P450 3A in drug discovery: A case study with melanocortin-4 receptor agonists. Xenobiotica 2008; 38:1437-51. [DOI: 10.1080/00498250802464685] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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7
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Chong SS, Fu Y, Liu L, Guo QX. O−H Bond Dissociation Enthalpies of Oximes: A Theoretical Assessment and Experimental Implications. J Phys Chem A 2007; 111:13112-25. [DOI: 10.1021/jp075699a] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Sha-Sha Chong
- Department of Chemistry, University of Science and Technology of China, Hefei 230026, China, and Department of Chemistry, Key Laboratory of Bioorganic Phosphorus Chemistry and Chemical Biology, Tsinghua University, Beijing 100084, China
| | - Yao Fu
- Department of Chemistry, University of Science and Technology of China, Hefei 230026, China, and Department of Chemistry, Key Laboratory of Bioorganic Phosphorus Chemistry and Chemical Biology, Tsinghua University, Beijing 100084, China
| | - Lei Liu
- Department of Chemistry, University of Science and Technology of China, Hefei 230026, China, and Department of Chemistry, Key Laboratory of Bioorganic Phosphorus Chemistry and Chemical Biology, Tsinghua University, Beijing 100084, China
| | - Qing-Xiang Guo
- Department of Chemistry, University of Science and Technology of China, Hefei 230026, China, and Department of Chemistry, Key Laboratory of Bioorganic Phosphorus Chemistry and Chemical Biology, Tsinghua University, Beijing 100084, China
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Viola G, Salvador A, Cecconet L, Basso G, Vedaldi D, Dall’Acqua F, Aloisi GG, Amelia M, Barbafina A, Latterini L, Elisei F. Photophysical Properties and Photobiological Behavior of Amodiaquine, Primaquine and Chloroquine. Photochem Photobiol 2007; 83:1415-27. [DOI: 10.1111/j.1751-1097.2007.00181.x] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Jetley UK, Singh BK, Garg BS, Mishra P. Synthesis, characterization and XRPD studies of the bioactive complex of 2-hydroxy-3,5-dimethyl acetophenoneoxime (HDMAOX) with oxovanadium(IV). J COORD CHEM 2007. [DOI: 10.1080/00958970701260305] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Affiliation(s)
- Umesh K. Jetley
- a Department of Chemistry , R. S. S. (P.G). College , Ghaziabad (NCR, Delhi), India
| | - Bibhesh K. Singh
- b Department of Chemistry , University of Delhi , Delhi 110007, India
| | - Bhagwan S. Garg
- b Department of Chemistry , University of Delhi , Delhi 110007, India
| | - Parashuram Mishra
- b Department of Chemistry , University of Delhi , Delhi 110007, India
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Singh BK, Jetley UK, Sharma RK, Garg BS. Synthesis, characterization and biological activity of complexes of 2-hydroxy-3,5-dimethylacetophenoneoxime (HDMAOX) with copper(II), cobalt(II), nickel(II) and palladium(II). SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2007; 68:63-73. [PMID: 17258502 DOI: 10.1016/j.saa.2006.11.001] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2006] [Accepted: 11/01/2006] [Indexed: 05/13/2023]
Abstract
A new series of complexes of 2-hydroxy-3,5-dimethyl acetophenone oxime (HDMAOX) with Cu(II), Co(II), Ni(II) and Pd(II) have been prepared and characterized by different physical techniques. Infrared spectra of the complexes indicate deprotonation and coordination of the phenolic OH. It also confirms that nitrogen atom of the oximino group contributes to the complexation. Electronic spectra and magnetic susceptibility measurements reveal square planar geometry for Cu(II), Ni(II) and Pd(II) complexes and tetrahedral geometry for Co(II) complex. The elemental analyses and mass spectral data have justified the ML(2) composition of complexes. Kinetic and thermodynamic parameters were computed from the thermal decomposition data using Coats and Redfern method. The geometry of the metal complexes has been optimized with the help of molecular modeling. The free ligand (HDMAOX) and its metal complexes have been tested in vitro against Alternarie alternate, Aspergillus flavus, Aspergillus nidulans and Aspergillus niger fungi and Streptococcus, Staph, Staphylococcus and Escherchia coli bacteria in order to assess their antimicrobial potential. The results indicate that the ligand and its metal complexes possess antimicrobial properties.
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Affiliation(s)
- Bibhesh K Singh
- Department of Chemistry, University of Delhi, Delhi 110007, India
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de Lijser HJP, Rangel NA, Tetalman MA, Tsai CK. Mechanistic Aspects of the Formation of Aldehydes and Nitriles in Photosensitized Reactions of Aldoxime Ethers. J Org Chem 2007; 72:4126-34. [PMID: 17477578 DOI: 10.1021/jo0703707] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The photooxidation of a series of aldoxime ethers was studied by laser flash photolysis and steady-state (product studies) methods. Nanosecond laser flash photolysis studies have shown that chloranil (CA)-sensitized reactions of the O-methyl (1), O-ethyl (2), O-benzyl (3), and O-tert-butyl (4) benzaldehyde oximes result in the formation of the corresponding radical cations. In polar non-nucleophilic solvents such as acetonitrile, there are several follow-up pathways available depending on the structure of the aldoxime ether and the energetics of the reaction pathway. When the free energy of electron transfer (DeltaGET) becomes endothermic, syn-anti isomerization is the dominant pathway. This isomerization pathway is a result of triplet energy transfer from CA to the aldoxime ether. For substrates with alpha-protons (aldoxime ethers 1-3), the follow-up reactions involve deprotonation at the alpha-position followed by beta-scission to form the benziminyl radical (and an aldehyde). The benziminyl radical reacts to give benzaldehyde, the major product under these conditions. A small amount of benzonitrile is also observed. In the absence of alpha-hydrogens (aldoxime ether 4), the major product is benzonitrile, which is thought to occur via reaction of the excited (triplet) sensitizer with the aldoxime ether. Abstraction of the iminyl hydrogen yields an imidoyl radical, which undergoes a beta-scission to yield benzonitrile. An alternative pathway involving electron transfer followed by removal of the iminyl proton was not deemed viable based on charge densities obtained from DFT (B3LYP/6-31G*) calculations. Similarly, a rearrangement pathway involving an intramolecular hydrogen atom transfer process was ruled out through experiments with a deuterium-labeled benzaldehyde oxime ether. Studies involving nucleophilic solvents have shown that all aldoxime ethers reacted with MeOH by clean second-order kinetics with rate constants of 0.7 to 1.2 x 10(7) M(-1) s(-1), which suggests that there is only a small steric effect in these reactions. The steady-state experiments demonstrated that under these conditions no nitrile is formed. This is explained by a mechanistic scheme involving nucleophilic attack on the nitrogen of the aldoxime ether radical cation, followed by solvent-assisted [1,3]-proton transfer and elimination of an alcohol, similar to the results obtained for a series of acetophenone oxime ethers.
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Affiliation(s)
- H J Peter de Lijser
- Department of Chemistry and Biochemistry, California State University, Fullerton, California 92834-6866, USA.
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de Lijser HJP, Hsu S, Marquez BV, Park A, Sanguantrakun N, Sawyer JR. Effect of Structure in Benzaldehyde Oximes on the Formation of Aldehydes and Nitriles under Photoinduced Electron-Transfer Conditions. J Org Chem 2006; 71:7785-92. [PMID: 16995687 DOI: 10.1021/jo061325m] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The mechanistic aspects of the photosensitized reactions of a series of benzaldehyde oximes (1a-o) were studied by steady-state (product studies) and laser flash photolysis methods. Nanosecond laser flash photolysis studies have shown that the reaction of the oxime with triplet chloranil (3CA) proceeds via an electron-transfer mechanism provided the free energy for electron transfer (DeltaG(ET)) is favorable; typically, the oxidation potential of the oxime should be below 2.0 V. Substituted benzaldehyde oximes with oxidation potentials greater than 2.0 V quench 3CA at rates that are independent of the substituent and the oxidation potential. The most likely mechanism under these conditions is a hydrogen atom transfer mechanism as this reaction should be dependent on the O-H bond strength only, which is virtually the same for all oximes. Product studies have shown that aldoximes react to give both the corresponding aldehyde and the nitrile. The important intermediate in the aldehyde pathway is the iminoxyl radical, which is formed via an electron transfer-proton transfer (ET-PT) sequence (for oximes with low oxidation potentials) or via a hydrogen atom transfer (HAT) pathway (for oximes with larger oxidation potentials). The nitriles are proposed to result from intermediate iminoyl radicals, which can be formed via direct hydrogen atom abstraction or via an electron-transfer-proton-transfer sequence. The experimental data seems to support the direct hydrogen atom abstraction as evidenced by the break in linearity in the plot of the quenching rates against the oxidation potential, which suggests a change in mechanism. The nitrile product is favored when electron-accepting substituents are present on the benzene ring of the benzaldehyde oximes or when the hydroxyl hydrogen atom is unavailable for abstraction. The latter is the case in pyridine-2-carboxaldoxime (2), where a strong intramolecular hydrogen bond is formed. Other molecules that form weaker intramolecular hydrogen bonds such as 2-furaldehyde oxime (3) and thiophene-2-carboxaldoxime (4) tend to yield increasing amounts of aldehyde.
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Affiliation(s)
- H J Peter de Lijser
- Department of Chemistry & Biochemistry, California State University-Fullerton, Fullerton, California 92834-6866, USA.
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