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Feng S, Karanth S, Almuhaideb E, Parveen S, Pradhan AK. Machine learning to predict the relationship between Vibrio spp. concentrations in seawater and oysters and prevalent environmental conditions. Food Res Int 2024; 188:114464. [PMID: 38823834 DOI: 10.1016/j.foodres.2024.114464] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2024] [Revised: 04/26/2024] [Accepted: 05/01/2024] [Indexed: 06/03/2024]
Abstract
Vibrio parahaemolyticus and Vibrio vulnificus are bacteria with a significant public health impact. Identifying factors impacting their presence and concentrations in food sources could enable the identification of significant risk factors and prevent incidences of foodborne illness. In recent years, machine learning has shown promise in modeling microbial presence based on prevalent external and internal variables, such as environmental variables and gene presence/absence, respectively, particularly with the generation and availability of large amounts and diverse sources of data. Such analyses can prove useful in predicting microbial behavior in food systems, particularly under the influence of the constant changes in environmental variables. In this study, we tested the efficacy of six machine learning regression models (random forest, support vector machine, elastic net, neural network, k-nearest neighbors, and extreme gradient boosting) in predicting the relationship between environmental variables and total and pathogenic V. parahaemolyticus and V. vulnificus concentrations in seawater and oysters. In general, environmental variables were found to be reliable predictors of total and pathogenic V. parahaemolyticus and V. vulnificus concentrations in seawater, and pathogenic V. parahaemolyticus in oysters (Acceptable Prediction Zone >70 %) when analyzed using our machine learning models. SHapley Additive exPlanations, which was used to identify variables influencing Vibrio concentrations, identified chlorophyll a content, seawater salinity, seawater temperature, and turbidity as influential variables. It is important to note that different strains were differentially impacted by the same environmental variable, indicating the need for further research to study the causes and potential mechanisms of these variations. In conclusion, environmental variables could be important predictors of Vibrio growth and behavior in seafood. Moreover, the models developed in this study could prove invaluable in assessing and managing the risks associated with V. parahaemolyticus and V. vulnificus, particularly in the face of a changing environment.
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Affiliation(s)
- Shuyi Feng
- Department of Nutrition and Food Science, University of Maryland, College Park, MD 20742, USA
| | - Shraddha Karanth
- Department of Nutrition and Food Science, University of Maryland, College Park, MD 20742, USA
| | - Esam Almuhaideb
- Department of Agriculture, Food and Resource Sciences, University of Maryland Eastern Shore, Princess Anne, MD 21853, USA
| | - Salina Parveen
- Department of Agriculture, Food and Resource Sciences, University of Maryland Eastern Shore, Princess Anne, MD 21853, USA
| | - Abani K Pradhan
- Department of Nutrition and Food Science, University of Maryland, College Park, MD 20742, USA; Center for Food Safety and Security Systems, University of Maryland, College Park, MD 20742, USA.
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2
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Pourmozaffar S, Tamadoni Jahromi S, Gozari M, Rameshi H, Gozari M, Pazir MK, Sarvi B, Abolfathi M, Nahavandi R. The first reporting of prevalence Vibrio species and expression of HSP genes in rayed pearl oyster (Pinctada radiata) under thermal conditions. FISH & SHELLFISH IMMUNOLOGY 2023; 139:108907. [PMID: 37348687 DOI: 10.1016/j.fsi.2023.108907] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2023] [Revised: 05/09/2023] [Accepted: 06/19/2023] [Indexed: 06/24/2023]
Abstract
The main goal of the present study was to evaluate the influence of thermal exposure on Vibrio population and HSP genes expression (HSP 90, HSP70, and HSP20) in rayed pearl oyster (P. radiata). To this end, the oysters were reared for 30 days at temperatures of 22 °C (control), 25 °C, 27 °C, and 29 °C. The results showed that five dominate Vibrio strains including Vibrio hepatarius, V. harveyi, V. alginolyticus, V. parahaemolyticus, and V. rotiferianus were identified. The highest population of V. parahaemolyticus, V. alginolyticus, and V. harveyi, was found in 29οC group. According to real-time PCR, mantle exhibited the highest expression levels of HSP20, HSP70, and HSP90 genes. A higher level of HSP20 expression was observed at high temperatures (25 °C, 27 °C, and 29 °C) in the gonad and mantle compared to the control group (22 °C) while decrease in HSP90 expression level was recorded in 25 °C, 27 °C, and 29 °C groups. HSP20 expression level in adductor muscle was remarkably down-regulated in 27 °C and 29 °C groups. In this tissue, HSP70 was detected at highest levels in the 29οC group. In mantle, HSP90 gene expression was lowest at 22 °C water temperature. Several Vibrio strains have been identified from pearl Gulf oyster that haven't been previously reported. The identification of dominant Vibrio species is essential for epidemiological management strategies to control and prevent Vibrio outbreaks in pearl oyster farms. The expression pattern of HSP genes differs in rayed pearl oyster tissues due to differences in their thermal tolerance capability and physiological and biological characteristics. The present study provides useful molecular information for the ecological adaptation of rayed pearl oysters after exposure to different temperature levels.
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Affiliation(s)
- Sajjad Pourmozaffar
- Persian Gulf Mollusks Research Station, Persian Gulf and Oman Sea Ecology Research Center, Iranian Fisheries Sciences Research Institute (IFSRI), Agricultural Research Education and Extension Organization (AREEO), Bandar-e-Lengeh, Iran.
| | - Saeid Tamadoni Jahromi
- Persian Gulf and Oman Sea Ecology Research Center, Iranian Fisheries Sciences Research Institute (IFSRI), Agricultural Research Education and Extension Organization (AREEO), Bandar-Abbas, Iran
| | - Mohsen Gozari
- Persian Gulf and Oman Sea Ecology Research Center, Iranian Fisheries Sciences Research Institute (IFSRI), Agricultural Research Education and Extension Organization (AREEO), Bandar-Abbas, Iran
| | - Hossein Rameshi
- Persian Gulf Mollusks Research Station, Persian Gulf and Oman Sea Ecology Research Center, Iranian Fisheries Sciences Research Institute (IFSRI), Agricultural Research Education and Extension Organization (AREEO), Bandar-e-Lengeh, Iran
| | - Majid Gozari
- Persian Gulf and Oman Sea Ecology Research Center, Iranian Fisheries Sciences Research Institute (IFSRI), Agricultural Research Education and Extension Organization (AREEO), Bandar-Abbas, Iran
| | - Mohammad Khalil Pazir
- Iran Shrimp Research Center, Iranian Fisheries Science Research Institute, Agricultural Research, Education and Extension Organization (AREEO), Bushehr, Iran
| | - Behzad Sarvi
- Persian Gulf Mollusks Research Station, Persian Gulf and Oman Sea Ecology Research Center, Iranian Fisheries Sciences Research Institute (IFSRI), Agricultural Research Education and Extension Organization (AREEO), Bandar-e-Lengeh, Iran
| | - Marzieh Abolfathi
- Department of Fisheries, Faculty of Marine Science and Technology, University of Hormozgan, Bandar-Abbas, Iran
| | - Reza Nahavandi
- Animal Science Research Institute of Iran (ASRI), Agricultural Research, Education and Extension Organization (AREEO), Karaj, Iran
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3
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de Souza RV, Moresco V, Miotto M, Souza DSM, de Campos CJA. Prevalence, distribution and environmental effects on faecal indicator bacteria and pathogens of concern in commercial shellfish production areas in a subtropical region of a developing country (Santa Catarina, Brazil). ENVIRONMENTAL MONITORING AND ASSESSMENT 2022; 194:286. [PMID: 35303750 DOI: 10.1007/s10661-022-09950-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/18/2021] [Accepted: 03/12/2022] [Indexed: 06/14/2023]
Abstract
This paper reviews recent literature on the abundance and distribution of faecal indicator bacteria and pathogens in shellfish production areas in the state of Santa Catarina, on the subtropical coast of Brazil. This state supplies > 95% of the national production of shellfish. Microbiological monitoring data were mapped using GIS and the results compared with those from other countries. Coastal human population is the main predictive parameter for faecal bacteria in the production areas. Temporal variations of the bacteria can also be predicted by solar radiation and rainfall. The prevalence of pathogens such as hepatitis A virus, human norovirus, Salmonella spp. and Vibrio spp. does not differ substantially from that in developed countries. The information reported here can be used to inform development of microbiological risk profiles for shellfish production areas.
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Affiliation(s)
- Robson Ventura de Souza
- Empresa de Pesquisa Agropecuária e Extensão Rural de Santa Catarina (Epagri), Rodovia Admar Gonzaga, 1.188, Itacorubi, Caixa Postal 502, Florianópolis, SC, CEP 88034-901, Brazil.
| | - Vanessa Moresco
- Division of Biomedical Sciences, School of Medicine, University of California Riverside, Riverside, CA 92521-0001, USA
| | - Marilia Miotto
- Departamento de Ciência e Tecnologia de Alimentos, Centro de Tecnologia de Alimentos, Universidade Federal de Santa Catarina (UFSC), Rodovia Admar Gonzaga, 1346, Itacorubi, Florianópolis, Santa Catarina, 88034-001, Brazil
| | - Doris Sobral Marques Souza
- Departamento de Ciência e Tecnologia de Alimentos, Centro de Tecnologia de Alimentos, Universidade Federal de Santa Catarina (UFSC), Rodovia Admar Gonzaga, 1346, Itacorubi, Florianópolis, Santa Catarina, 88034-001, Brazil
- Laboratório de Virologia Aplicada, Centro de Ciências Biológicas, Universidade Federal de Santa Catarina (UFSC), Campus Universitário Trindade, CEP 88040-900, Florianópolis, Santa Catarina, 88034-001, Brazil
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4
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Lagreze F, Sühnel S, Ramos R, Miotto M, Albuquerque M, Vieira C, Melo CD. Bioaccumulation and depuration of Escherichia coli in the tropical clam Anomalocardia brasiliana at different salinities. ARQ BRAS MED VET ZOO 2022. [DOI: 10.1590/1678-4162-12230] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
ABSTRACT Anomalocardia brasiliana is an intertidal filter-feeding clam that can accumulate enterobacteria, such as Escherichia coli, and consequently affect human health. Shellfish depuration is a procedure which reduces microbiological contaminants; however, salinity and depuration time can vary across species to adequately reduce bacteria load. To analyze the effect of salinity on the bioaccumulation and depuration of E. coli by A. brasiliana, this study evaluated salinity and depuration time in animals artificially contaminated with E. coli. Each experimental group of clams were acclimated for 6 hours in a recirculating aquaculture system (RAS) and then exposed to E. coli for 18 hours. Following exposure, clams were then held at one of four salinities (35, 30, 25 e 20) for a period of one of four depuration times (0, 12, 24, 36 and 48h). The highest bioaccumulation of E. coli in A. brasiliana was observed in clams held at salinities of 35, 30 and 25. The greatest reduction of E. coli in A. brasiliana was observed in clams held at 25 for 48 hours. A salinity of 20 showed low bioaccumulation and depuration of E. coli. The results of this study will contribute to developing a protocol for depurating A. brasiliana to mitigate human health concerns.
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Affiliation(s)
| | - S. Sühnel
- Universidade Federal de Santa Catarina, Brazil
| | - R.J. Ramos
- Universidade Federal de Santa Catarina, Brazil
| | - M. Miotto
- Universidade Federal de Santa Catarina, Brazil
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5
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PIRES MARTINS VG, DOS SANTOS NASCIMENTO J, DA SILVA MARTINS FM, CEOTTO VIGODER H. Vibriosis and its impact on microbiological food safety. FOOD SCIENCE AND TECHNOLOGY 2022. [DOI: 10.1590/fst.65321] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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6
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Predictive models for the effect of environmental factors on the abundance of Vibrio parahaemolyticus in oyster farms in Taiwan using extreme gradient boosting. Food Control 2021. [DOI: 10.1016/j.foodcont.2021.108353] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Abioye OE, Osunla AC, Okoh AI. Molecular Detection and Distribution of Six Medically Important Vibrio spp. in Selected Freshwater and Brackish Water Resources in Eastern Cape Province, South Africa. Front Microbiol 2021; 12:617703. [PMID: 34149632 PMCID: PMC8208477 DOI: 10.3389/fmicb.2021.617703] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2020] [Accepted: 03/29/2021] [Indexed: 01/22/2023] Open
Abstract
Water resources contaminated with pathogenic Vibrio species are usually a source of devastating infection outbreaks that have been a public health concern in both developed and developing countries over the decades. The present study assessed the prevalence of six medically significant Vibrio species in some water resources in Eastern Cape Province, South Africa for 12 months. We detected vibrios in all the 194 water samples analyzed using polymerase chain reaction (PCR). The prevalence of Vibrio cholerae, Vibrio mimicus, Vibrio fluvialis, Vibrio vulnificus, Vibrio alginolyticus, and Vibrio parahaemolyticus in freshwater samples was 34, 19, 9, 2, 3, and 2%, and that in brackish water samples was 44, 28, 10, 7, 46, and 51%, respectively. The population of the presumptive Vibrio spp. isolated from freshwater (628) and brackish water (342) samples that were confirmed by PCR was 79% (497/628) and 85% (291/342), respectively. Twenty-two percent of the PCR-confirmed Vibrio isolates from freshwater (n = 497) samples and 41% of the PCR-confirmed Vibrio isolates from brackish water samples (n = 291) fall among the Vibrio species of interest. The incidences of V. cholerae, V. mimicus, V. fluvialis, V. vulnificus, V. alginolyticus, and V. parahaemolyticus amidst these Vibrio spp. of interest that were recovered from freshwater samples were 75, 14, 4, 6, 1, and 1%, whereas those from brackish water samples were 24, 7, 3, 3, 47, and 18%, respectively. Our observation during the study suggests pollution as the reason for the unusual isolation of medically important vibrios in winter. Correlation analysis revealed that temperature drives the frequency of isolation, whereas salinity drives the composition of the targeted Vibrio species at our sampling sites. The finding of the study is of public health importance going by the usefulness of the water resources investigated. Although controlling and preventing most of the factors that contribute to the prevalence of medically important bacteria, such as Vibrio species, at the sampling points might be difficult, regular monitoring for creating health risk awareness will go a long way to prevent possible Vibrio-related infection outbreaks at the sampling sites and their immediate environment.
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Affiliation(s)
- Oluwatayo E Abioye
- SAMRC Microbial Water Quality Monitoring Centre, University of Fort Hare, Alice, South Africa.,Applied and Environmental Microbiology Research Group, Department of Biochemistry and Microbiology, University of Fort Hare, Alice, South Africa.,Department of Microbiology, Obafemi Awolowo University, Ife, Nigeria
| | - Ayodeji Charles Osunla
- SAMRC Microbial Water Quality Monitoring Centre, University of Fort Hare, Alice, South Africa.,Applied and Environmental Microbiology Research Group, Department of Biochemistry and Microbiology, University of Fort Hare, Alice, South Africa.,Department of Microbiology, Adekunle Ajasin University, Akungba-Akoko, Nigeria
| | - Anthony I Okoh
- SAMRC Microbial Water Quality Monitoring Centre, University of Fort Hare, Alice, South Africa.,Applied and Environmental Microbiology Research Group, Department of Biochemistry and Microbiology, University of Fort Hare, Alice, South Africa.,Department of Environmental Health Sciences, University of Sharjah, Sharjah, United Arab Emirates
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8
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Ndraha N, Hsiao HI. The risk assessment of Vibrio parahaemolyticus in raw oysters in Taiwan under the seasonal variations, time horizons, and climate scenarios. Food Control 2019. [DOI: 10.1016/j.foodcont.2019.03.020] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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9
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Miotto M, Ossai SA, Meredith JE, Barretta C, Kist A, Prudencio ES, R. W. Vieira C, Parveen S. Genotypic and phenotypic characterization of Escherichia coli isolated from mollusks in Brazil and the United States. Microbiologyopen 2019; 8:e00738. [PMID: 30311420 PMCID: PMC6528596 DOI: 10.1002/mbo3.738] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2018] [Revised: 08/27/2018] [Accepted: 08/28/2018] [Indexed: 11/06/2022] Open
Abstract
The aim of this study was to determine the serogroups, antimicrobial resistance and genetic diversity of Escherichia coli isolates from samples of bivalve mollusks collected along Santa Catarina coast, Brazil, and from the Chesapeake Bay, Maryland, USA. One hundred forty-one E. coli isolates were characterized for serogroups with 181 specific O antisera and antimicrobial susceptibility using the disk diffusion method. The genetic diversity was assessed using pulsed-field gel electrophoresis (PFGE). The results showed that among the isolates, 19.9% were classified as multi-drug resistant (MDR) and resistance was most frequently observed to cephalothin, nitrofurantoin, and ampicillin. The predominant serogroups were O6, O8, and O38. Some serogroups were recognized as pathogenic E. coli. PFGE dendrograms indicated extensive genetic diversity among the isolates. Although characteristics of the E. coli isolates were highly variable, it is important to note that E. coli belonging to pathogenic serogroups and MDR isolates are present in mollusks of both study areas. This is the first report on the phenotypic and genotypic characterization of E. coli from mollusks from Santa Catarina and the Chesapeake Bay that should encourage studies focusing on comparison of isolates across countries.
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Affiliation(s)
- Marília Miotto
- Department of Food Science and TechnologyFederal University of Santa CatarinaFlorianopolisSanta CatarinaBrazil
| | - Sylvia A. Ossai
- Food Science and Technology ProgramUniversity of Maryland Eastern ShorePrincess AnneMaryland
| | - Joan E. Meredith
- Food Science and Technology ProgramUniversity of Maryland Eastern ShorePrincess AnneMaryland
| | - Clarissa Barretta
- Department of Food Science and TechnologyFederal University of Santa CatarinaFlorianopolisSanta CatarinaBrazil
| | - Airton Kist
- Laboratory of Computational and Applied Statistics, Department of Mathematics and StatisticsState University of Ponta GrossaPonta GrossaParanaBrazil
| | - Elane S. Prudencio
- Department of Food Science and TechnologyFederal University of Santa CatarinaFlorianopolisSanta CatarinaBrazil
| | - Cleide R. W. Vieira
- Department of Food Science and TechnologyFederal University of Santa CatarinaFlorianopolisSanta CatarinaBrazil
| | - Salina Parveen
- Food Science and Technology ProgramUniversity of Maryland Eastern ShorePrincess AnneMaryland
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10
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Abioye OE, Okoh AI. Limpet ( Scutellastra cochlear) Recovered From Some Estuaries in the Eastern Cape Province, South Africa Act as Reservoirs of Pathogenic Vibrio Species. Front Public Health 2018; 6:237. [PMID: 30234084 PMCID: PMC6128111 DOI: 10.3389/fpubh.2018.00237] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2018] [Accepted: 08/08/2018] [Indexed: 12/19/2022] Open
Abstract
Limpet (Scutellastra cochlear) serves as seafood recipe and an important member of the aquatic food chain. It is an abundant mollusc in some aquatic environment in South Africa. In this study, we investigated the potential of the molluscs harvested from the Buffalo, Swartkops, and Kowie estuaries in the Eastern Cape Province, South Africa to serve as transient or maintenance reservoir of Vibrio species. The mollusc and source water samples were collected monthly from the rivers between December 2016 and November 2017. The reservoir category of the limpet samples recovered was determined by employing the combination of MPN-PCR method and statistical analysis (comparison of mean and proportion tests). The densities of Vibrio spp. in limpet and their source water samples were determined using MPN-PCR methods. Presumptive isolates were recovered by processing the samples with thiosulfate-citrate-bile salts-sucrose agar and where necessary, samples were enriched with alkaline peptone water. The presumptive isolates were identified using PCR methods with emphasis on six Vibrio species of public health importance. Vibrio spp. were detected in all the limpet samples but not in all the water samples. The densities of Vibrio spp. in the limpet samples were more than the densities of Vibrio species in their source water and these were significant at P < 0.05. In like manner, five out of the six key Vibrio pathogens targeted in this study were more prevalent in limpet samples than in source water samples. Based on our findings, we concluded that our method though could be improved on, is efficient for the determination of reservoir types of bacterial-carrying organisms. We also concluded that the limpet found in the estuaries are not just a transient but a maintenance reservoir of Vibrio spp. which could cause vibrio-related infections.
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Affiliation(s)
- Oluwatayo E Abioye
- SAMRC Microbial Water Quality Monitoring Centre, University of Fort Hare, Alice, South Africa.,Applied and Environmental Microbiology Research Group, Department Of Biochemistry and Microbiology, University of Fort Hare, Alice, South Africa.,Department of Microbiology, Obafemi Awolowo University, Ile-Ife, Nigeria
| | - Anthony I Okoh
- SAMRC Microbial Water Quality Monitoring Centre, University of Fort Hare, Alice, South Africa.,Applied and Environmental Microbiology Research Group, Department Of Biochemistry and Microbiology, University of Fort Hare, Alice, South Africa
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11
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Delaware Inland Bays and Market Oyster ( Crassostrea virginica) Quality for Consumption. J FOOD QUALITY 2018. [DOI: 10.1155/2018/8765149] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023] Open
Abstract
Consumption of raw oysters is known to cause serious health conditions due to bioaccumulation of contaminants. As filter feeders, oysters ingest bacteria along with phytoplankton from their surrounding habitats. Ensuring seafood safety for human consumption is always a concern. Since oysters are consumed raw, disease causing organisms, environmental contaminants, toxins, chemicals, and even physical hazards such as soils and metals retained in the oysters can enter through feeding. The objective of this study was to determine the quality of oysters collected from Delaware Inland Bays (DIB) and compare them with market oysters. Environmental parameters were monitored from local waters of DIB classified as closed versus open for shellfish harvesting. Total aerobic bacteria and vibrio were higher in market oysters during the warmer months, with open water having the least microbial loads. There were no significant differences in total vibrio counts between the study sites (p=0.396), but significant differences were recorded over time (p=0.004). Water temperature and turbidity were directly proportional to total vibrio in oysters, and salinity was inversely related. Research findings in this study may help bring awareness of changes in bacterial loads due to seasonal changes and additional handling and storage.
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12
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de Souza RV, de Campos CJA, Garbossa LHP, Vianna LFDN, Seiffert WQ. Optimising statistical models to predict faecal pollution in coastal areas based on geographic and meteorological parameters. MARINE POLLUTION BULLETIN 2018; 129:284-292. [PMID: 29680550 DOI: 10.1016/j.marpolbul.2018.02.047] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2017] [Revised: 02/22/2018] [Accepted: 02/23/2018] [Indexed: 06/08/2023]
Abstract
This article describes a methodology for optimising predictive models for concentrations of faecal indicator organisms (FIOs) in coastal areas based on geographic and meteorological characteristics of upstream catchments. Concentrations of FIOs in mussels and water sampled from 50 sites in the south of Brazil from 2012 to 2013 were used to develop models to separately predict the spatial and temporal variations of FIOs. The geographical parameters used in predictive models for the spatial variation of FIOs were human population, urban area, percentage of impervious cover and total catchment area. The R2 of models representing catchments located within 3.1 km from the monitoring points was up to 150% higher than that for the nearest catchment. The temporal variation of FIOs was modelled considering the combined effect of meteorological parameters and different time windows. The explained variance in models based on rainfall and solar radiation increased up to 155% and 160%, respectively.
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Affiliation(s)
- Robson Ventura de Souza
- Empresa de Pesquisa Agropecuária e Extensão Rural de Santa Catarina (Epagri), Rodovia Admar Gonzaga, 1.347, Itacorubi, Florianópolis, SC 88034-901, Brazil.
| | | | - Luis Hamilton Pospissil Garbossa
- Empresa de Pesquisa Agropecuária e Extensão Rural de Santa Catarina (Epagri), Rodovia Admar Gonzaga, 1.347, Itacorubi, Florianópolis, SC 88034-901, Brazil
| | - Luiz Fernando de Novaes Vianna
- Empresa de Pesquisa Agropecuária e Extensão Rural de Santa Catarina (Epagri), Rodovia Admar Gonzaga, 1.347, Itacorubi, Florianópolis, SC 88034-901, Brazil
| | - Walter Quadros Seiffert
- Universidade Federal de Santa Catarina (UFSC), Rodovia Admar Gonzaga, 1346, Itacorubi, Florianópolis, SC 88034-001, Brazil
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13
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Mello DF, Danielli NM, Curbani F, Pontinha VA, Suhnel S, Castro MAM, Medeiros SC, Wendt NC, Trevisan R, Magalhães ARM, Dafre AL. First evidence of viral and bacterial oyster pathogens in the Brazilian coast. JOURNAL OF FISH DISEASES 2018; 41:559-563. [PMID: 29193213 DOI: 10.1111/jfd.12755] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/25/2017] [Revised: 10/13/2017] [Accepted: 10/17/2017] [Indexed: 06/07/2023]
Affiliation(s)
- D F Mello
- Biochemistry Department, Federal University of Santa Catarina, Florianopolis, SC, Brazil
| | - N M Danielli
- Biochemistry Department, Federal University of Santa Catarina, Florianopolis, SC, Brazil
| | - F Curbani
- Biochemistry Department, Federal University of Santa Catarina, Florianopolis, SC, Brazil
| | - V A Pontinha
- Aquaculture Department, Federal University of Santa Catarina, Florianopolis, SC, Brazil
| | - S Suhnel
- Aquaculture Department, Federal University of Santa Catarina, Florianopolis, SC, Brazil
| | - M A M Castro
- Aquaculture Department, Federal University of Santa Catarina, Florianopolis, SC, Brazil
| | - S C Medeiros
- Aquaculture Department, Federal University of Santa Catarina, Florianopolis, SC, Brazil
| | - N C Wendt
- Biochemistry Department, Federal University of Santa Catarina, Florianopolis, SC, Brazil
| | - R Trevisan
- Aquaculture Department, Federal University of Santa Catarina, Florianopolis, SC, Brazil
| | - A R M Magalhães
- Aquaculture Department, Federal University of Santa Catarina, Florianopolis, SC, Brazil
| | - A L Dafre
- Biochemistry Department, Federal University of Santa Catarina, Florianopolis, SC, Brazil
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14
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He Y, Sen B, Shang J, He Y, Xie N, Zhang Y, Zhang J, Johnson ZI, Wang G. Seasonal influence of scallop culture on nutrient flux, bacterial pathogens and bacterioplankton diversity across estuaries off the Bohai Sea Coast of Northern China. MARINE POLLUTION BULLETIN 2017; 124:411-420. [PMID: 28779889 DOI: 10.1016/j.marpolbul.2017.07.062] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2017] [Revised: 07/25/2017] [Accepted: 07/26/2017] [Indexed: 06/07/2023]
Abstract
In this study, we investigated the environmental impacts of scallop culture on two coastal estuaries adjacent the Bohai Sea including developing a quantitative PCR assay to assess the abundance of the bacterial pathogens Escherichia coli and Vibrio parahaemolyticus. Scallop culture resulted in a significant reduction of nitrogen, Chlorophyll a, and phosphorous levels in seawater during summer. The abundance of bacteria including V. parahaemolyticus varied significantly across estuaries and breeding seasons and was influenced by nitrate as well as nutrient ratios (Si/DIN, N/P). Bacterioplankton diversity varied across the two estuaries and seasons, and was dominated by Proteobacteria, Cyanobacteria, Actinobacteria, Bacteroidetes. Overall, this study suggests a significant influence of scallop culture on the ecology of adjacent estuaries and offers a sensitive tool for monitoring scallop contamination.
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Affiliation(s)
- Yaodong He
- Center for Marine Environmental Ecology, School of Environmental Science and Engineering, Tianjin University, Tianjin 300072, China
| | - Biswarup Sen
- Center for Marine Environmental Ecology, School of Environmental Science and Engineering, Tianjin University, Tianjin 300072, China
| | - Junyang Shang
- Center for Marine Environmental Ecology, School of Environmental Science and Engineering, Tianjin University, Tianjin 300072, China
| | - Yike He
- Center for Marine Environmental Ecology, School of Environmental Science and Engineering, Tianjin University, Tianjin 300072, China
| | - Ningdong Xie
- Center for Marine Environmental Ecology, School of Environmental Science and Engineering, Tianjin University, Tianjin 300072, China
| | - Yongfeng Zhang
- Key Laboratory of Systems Bioengineering (Ministry of Education), Tianjin University, Tianjin 300072, China
| | - Jianle Zhang
- Key Laboratory of Systems Bioengineering (Ministry of Education), Tianjin University, Tianjin 300072, China
| | - Zackary I Johnson
- Qinhuangdao Marine Environmental Monitoring Central Station, SOA, Qinhuangdao, Hebei 066002, China
| | - Guangyi Wang
- Center for Marine Environmental Ecology, School of Environmental Science and Engineering, Tianjin University, Tianjin 300072, China; Duke Marine Laboratory, Nicholas School of the Environment, Duke University, NC 28516, USA.
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15
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Garbossa LHP, Souza RV, Campos CJA, Vanz A, Vianna LFN, Rupp GS. Thermotolerant coliform loadings to coastal areas of Santa Catarina (Brazil) evidence the effect of growing urbanisation and insufficient provision of sewerage infrastructure. ENVIRONMENTAL MONITORING AND ASSESSMENT 2017; 189:27. [PMID: 28000123 DOI: 10.1007/s10661-016-5742-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2016] [Accepted: 12/06/2016] [Indexed: 05/20/2023]
Abstract
Thermotolerant coliform (TC) loadings were quantified for 49 catchments draining into the North and South Bays of Santa Catarina (SC, southeastern Brazil), an area known for its tourism and aquaculture. TC loadings were calculated based on flow measurements taken in 26 rivers. TC concentrations ere quantified based on surface water samples collected at 49 catchment outlets in 2012 and 2013. Median TC loads ranged from 3.7 × 103 to 6.8 × 108 MPN s-1. TC loadings in the catchments increased in proportion to increases in resident human population, population density and percentage of urbanised area. Catchments with more than 60% of area covered by wastewater collection and treatment systems had higher TC loads per person than catchments with less than 25%. Based on the study catchments, these results indicate that current sewerage infrastructure is ineffective in reducing contamination of faecal origin to surface waters. These findings have important implications for the management of microbiological health hazards in bathing, recreational and shellfish aquaculture waters in the North and South Bays of Santa Catarina Island.
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Affiliation(s)
- Luis H P Garbossa
- EPAGRI, Santa Catarina Agricultural Research and Extension Corporation, Rod. Admar Gonzaga, 1347-Itacorubi, Florianópolis, SC, 88034-901, Brazil.
| | - Robson V Souza
- EPAGRI, Santa Catarina Agricultural Research and Extension Corporation, Rod. Admar Gonzaga, 1347-Itacorubi, Florianópolis, SC, 88034-901, Brazil
| | - Carlos J A Campos
- Centre for Environment, Fisheries and Aquaculture Science (Cefas), Weymouth Laboratory, Lowestoft, UK
| | - Argeu Vanz
- EPAGRI, Santa Catarina Agricultural Research and Extension Corporation, Rod. Admar Gonzaga, 1347-Itacorubi, Florianópolis, SC, 88034-901, Brazil
| | - Luiz F N Vianna
- EPAGRI, Santa Catarina Agricultural Research and Extension Corporation, Rod. Admar Gonzaga, 1347-Itacorubi, Florianópolis, SC, 88034-901, Brazil
| | - Guilherme S Rupp
- EPAGRI, Santa Catarina Agricultural Research and Extension Corporation, Rod. Admar Gonzaga, 1347-Itacorubi, Florianópolis, SC, 88034-901, Brazil
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16
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Raszl S, Froelich B, Vieira C, Blackwood A, Noble R. Vibrio parahaemolyticusandVibrio vulnificusin South America: water, seafood and human infections. J Appl Microbiol 2016; 121:1201-1222. [DOI: 10.1111/jam.13246] [Citation(s) in RCA: 72] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2016] [Revised: 06/27/2016] [Accepted: 07/24/2016] [Indexed: 11/29/2022]
Affiliation(s)
- S.M. Raszl
- Department of Food Science and Technology; Federal University of Santa Catarina (UFSC); Florianopolis Brazil
| | - B.A. Froelich
- Institute of Marine Sciences; The University of North Carolina at Chapel Hill (UNC-CH); Morehead City NC USA
| | - C.R.W. Vieira
- Department of Food Science and Technology; Federal University of Santa Catarina (UFSC); Florianopolis Brazil
| | - A.D. Blackwood
- Institute of Marine Sciences; The University of North Carolina at Chapel Hill (UNC-CH); Morehead City NC USA
| | - R.T. Noble
- Institute of Marine Sciences; The University of North Carolina at Chapel Hill (UNC-CH); Morehead City NC USA
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17
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Odeyemi OA. Incidence and prevalence of Vibrio parahaemolyticus in seafood: a systematic review and meta-analysis. SPRINGERPLUS 2016; 5:464. [PMID: 27119068 PMCID: PMC4831955 DOI: 10.1186/s40064-016-2115-7] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/02/2015] [Accepted: 04/06/2016] [Indexed: 01/12/2023]
Abstract
Vibrio parahaemolyticus is an important seafood borne human pathogen worldwide due to it occurrence, prevalence and ability to cause gastrointestinal infections. This current study aim at investigating the incidence and prevalence of V. parahaemolyticus in seafood using systematic review-meta-analysis by exploring heterogeneity among primary studies. A comprehensive systematic review and meta-analysis of peer reviewed primary studies reported between 2003 and 2015 for the occurrence and prevalence of V. parahaemolyticus in seafood was conducted using “isolation”, “detection”, “prevalence”, “incidence”, “occurrence” or “enumeration” and V. parahaemolyticus as search algorithms in Web of Science (Science Direct) and ProQuest of electronic bibliographic databases. Data extracted from the primary studies were then analyzed with fixed effect meta-analysis model for effect rate to explore heterogeneity between the primary studies. Publication bias was evaluated using funnel plot. A total of 10,819 articles were retrieved from the data bases of which 48 studies met inclusion criteria. V. parahaemolyticus could only be isolated from 2761 (47.5 %) samples of 5811 seafood investigated. The result of this study shows that incidence of V. parahaemolyticus was more prevalent in oysters with overall prevalence rate of 63.4 % (95 % CI 0.592–0.674) than other seafood. Overall prevalence rate of clams was 52.9 % (95 % CI 0.490–0.568); fish 51.0 % (95 % CI 0.476–0.544); shrimps 48.3 % (95 % CI 0.454–0.512) and mussels, scallop and periwinkle: 28.0 % (95 % CI 0.255–0.307). High heterogeneity (p value <0.001; I2 = 95.291) was observed mussel compared to oysters (I2 = 91.024). It could be observed from this study that oysters harbor V. parahaemolyticus based on the prevalence rate than other seafood investigated. The occurrence and prevalence of V. parahaemolyticus is of public health importance, hence, more studies involving seafood such as mussels need to be investigated.
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Affiliation(s)
- Olumide A Odeyemi
- Ecology and Biodiversity Centre, Institute for Marine and Antarctic Studies, University of Tasmania, Launceston, Australia
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18
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Lal TM, Sano M, Ransangan J. Genome characterization of a novel vibriophage VpKK5 (Siphoviridae) specific to fish pathogenic strain of Vibrio parahaemolyticus. J Basic Microbiol 2016; 56:872-88. [PMID: 26960780 DOI: 10.1002/jobm.201500611] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2015] [Accepted: 02/19/2016] [Indexed: 12/25/2022]
Abstract
Vibrio parahaemolyticus has long been known pathogenic to shrimp but only recently it is also reported pathogenic to tropical cultured marine finfish. Traditionally, bacterial diseases in aquaculture are often treated using synthetic antibiotics but concern due to side effects of these chemicals is elevating hence, new control strategies which are both environmental and consumer friendly, are urgently needed. One promising control strategy is the bacteriophage therapy. In this study, we report the isolation and characterization of a novel vibriophage (VpKK5), belonging to the family Siphoviridae that was specific and capable of complete lysing the fish pathogenic strain of V. parahaemolyticus. The VpKK5 exhibited short eclipse and latent periods of 24 and 36 min, respectively, but with a large burst size of 180 pfu/cell. The genome analysis revealed that the VpKK5 is a novel bacteriophage with the estimated genome size of 56,637 bp and has 53.1% G + C content. The vibriophage has about 80 predicted open reading frames consisted of 37 complete coding sequences which did not match to any protein databases. The analysis also found no lysogeny and virulence genes in the genome of VpKK5. With such genome features, we suspected the vibriophage is novel and could be explored for phage therapy against fish pathogenic strains of V. parahaemolyticus in the near future.
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Affiliation(s)
- Tamrin M Lal
- Microbiology and Fish Disease Laboratory, Borneo Marine Research Institute, Universiti Malaysia Sabah, Jalan UMS, Kota Kinabalu, Sabah, Malaysia
| | - Motohiko Sano
- Laboratory of Fish Pathology, Department of Marine Biosciences, Tokyo University of Marine Science and Technology, Minato-ku, Tokyo, Japan
| | - Julian Ransangan
- Microbiology and Fish Disease Laboratory, Borneo Marine Research Institute, Universiti Malaysia Sabah, Jalan UMS, Kota Kinabalu, Sabah, Malaysia
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19
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Paranjpye RN, Nilsson WB, Liermann M, Hilborn ED, George BJ, Li Q, Bill BD, Trainer VL, Strom MS, Sandifer PA. Environmental influences on the seasonal distribution of Vibrio parahaemolyticus in the Pacific Northwest of the USA. FEMS Microbiol Ecol 2015; 91:fiv121. [PMID: 26454066 DOI: 10.1093/femsec/fiv121] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/30/2015] [Indexed: 11/13/2022] Open
Abstract
Populations of Vibrio parahaemolyticus in the environment can be influenced by numerous factors. We assessed the correlation of total (tl+) and potentially virulent (tdh+) V. parahaemolyticus in water with three harmful algal bloom (HAB) genera (Pseudo-nitzschia, Alexandrium and Dinophysis), the abundance of diatoms and dinoflagellates, chlorophyll-a and temperature, salinity and macronutrients at five sites in Washington State from 2008-2009. The variability in V. parahaemolyticus density was explained predominantly by strong seasonal trends where maximum densities occurred in June, 2 months prior to the highest seasonal water temperature. In spite of large geographic differences in temperature, salinity and nutrients, there was little evidence of corresponding differences in V. parahaemolyticus density. In addition, there was no evident relationship between V. parahaemolyticus and indices of HAB genera, perhaps due to a lack of significant HAB events during the sampling period. The only nutrient significantly associated with V. parahaemolyticus density after accounting for the seasonal trend was silicate. This negative relationship may be caused by a shift in cell wall structure for some diatom species to a chitinous substrate preferred by V. parahaemolyticus. Results from our study differ from those in other regions corroborating previous findings that environmental factors that trigger vibrio and HAB events may differ depending on geographic locations. Therefore caution should be used when applying results from one region to another.
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Affiliation(s)
- Rohinee N Paranjpye
- Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, 2725 Montlake Boulevard E, Seattle, WA 98112, USA
| | - William B Nilsson
- Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, 2725 Montlake Boulevard E, Seattle, WA 98112, USA
| | - Martin Liermann
- Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, 2725 Montlake Boulevard E, Seattle, WA 98112, USA
| | - Elizabeth D Hilborn
- US Environmental Protection Agency, Office of Research and Development, National Health and Environmental Effects Laboratory, Research Triangle Park, NC 27709, USA
| | - Barbara J George
- US Environmental Protection Agency, Office of Research and Development, National Health and Environmental Effects Laboratory, Research Triangle Park, NC 27709, USA
| | - Quanlin Li
- Biostatistics and Bioinformatics Research Center, Samuel Oschin Comprehensive Cancer Institute, Cedars Sinai Medical Center, Los Angeles, CA, USA
| | - Brian D Bill
- Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, 2725 Montlake Boulevard E, Seattle, WA 98112, USA
| | - Vera L Trainer
- Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, 2725 Montlake Boulevard E, Seattle, WA 98112, USA
| | - Mark S Strom
- Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, 2725 Montlake Boulevard E, Seattle, WA 98112, USA
| | - Paul A Sandifer
- Hollings Marine Laboratory, National Ocean Service, National Oceanic and Atmospheric Administration, 331 Fort Johnson Road, Charleston, SC 29412, USA
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20
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Long-term study of Vibrio parahaemolyticus prevalence and distribution in New Zealand shellfish. Appl Environ Microbiol 2015; 81:2320-7. [PMID: 25616790 DOI: 10.1128/aem.04020-14] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
The food-borne pathogen Vibrio parahaemolyticus has been reported as being present in New Zealand (NZ) seawaters, but there have been no reported outbreaks of food-borne infection from commercially grown NZ seafood. Our study determined the current incidence of V. parahaemolyticus in NZ oysters and Greenshell mussels and the prevalence of V. parahaemolyticus tdh and trh strains. Pacific (235) and dredge (21) oyster samples and mussel samples (55) were obtained from commercial shellfish-growing areas between December 2009 and June 2012. Total V. parahaemolyticus numbers and the presence of pathogenic genes tdh and trh were determined using the FDA most-probable-number (MPN) method and confirmed using PCR analysis. In samples from the North Island of NZ, V. parahaemolyticus was detected in 81% of Pacific oysters and 34% of mussel samples, while the numbers of V. parahaemolyticus tdh and trh strains were low, with just 3/215 Pacific oyster samples carrying the tdh gene. V. parahaemolyticus organisms carrying tdh and trh were not detected in South Island samples, and V. parahaemolyticus was detected in just 1/21 dredge oyster and 2/16 mussel samples. Numbers of V. parahaemolyticus organisms increased when seawater temperatures were high, the season when most commercial shellfish-growing areas are not harvested. The numbers of V. parahaemolyticus organisms in samples exceeded 1,000 MPN/g only when the seawater temperatures exceeded 19°C, so this environmental parameter could be used as a trigger warning of potential hazard. There is some evidence that the total V. parahaemolyticus numbers increased compared with those reported from a previous 1981 to 1984 study, but the analytical methods differed significantly.
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