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van Dijk MAM, Buil JB, Tehupeiory-Kooreman M, Broekhuizen MJ, Broens EM, Wagenaar JA, Verweij PE. Azole Resistance in Veterinary Clinical Aspergillus fumigatus Isolates in the Netherlands. Mycopathologia 2024; 189:50. [PMID: 38864903 PMCID: PMC11169034 DOI: 10.1007/s11046-024-00850-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2024] [Accepted: 03/14/2024] [Indexed: 06/13/2024]
Abstract
Aspergillus fumigatus is a saprophytic fungal pathogen that causes opportunistic infections in animals and humans. Azole resistance has been reported globally in human A. fumigatus isolates, but the prevalence of resistance in isolates from animals is largely unknown. A retrospective resistance surveillance study was performed using a collection of clinical A. fumigatus isolates from various animal species collected between 2015 and 2020. Agar-based azole resistance screening of all isolates was followed by in vitro antifungal susceptibility testing and cyp51A gene sequencing of the azole-resistant isolates. Over the 5 year period 16 (11.3%) of 142 A. fumigatus culture-positive animals harbored an azole-resistant isolate. Resistant isolates were found in birds (15%; 2/13), cats (21%; 6/28), dogs (8%; 6/75) and free-ranging harbor porpoise (33%; 2/6). Azole-resistance was cyp51A mediated in all isolates: 81.3% (T-67G/)TR34/L98H, 12.5% TR46/Y121F/T289A. In one azole-resistant A. fumigatus isolate a combination of C(-70)T/F46Y/C(intron7)T/C(intron66)T/M172V/E427K single-nucleotide polymorphisms in the cyp51A gene was found. Of the animals with an azole-resistant isolate and known azole exposure status 71.4% (10/14) were azole naive. Azole resistance in A. fumigatus isolates from animals in the Netherlands is present and predominantly cyp51A TR-mediated, supporting an environmental route of resistance selection. Our data supports the need to include veterinary isolates in resistance surveillance programs. Veterinarians should consider azole resistance as a reason for therapy failure when treating aspergillosis and consider resistance testing of relevant isolates.
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Affiliation(s)
- Marloes A M van Dijk
- Faculty of Veterinary Medicine, Utrecht University, 3584 CL, Utrecht, The Netherlands.
| | - Jochem B Buil
- Department of Medical Microbiology, Radboud University Medical Center, 6525 GA, Nijmegen, The Netherlands
| | - Marlou Tehupeiory-Kooreman
- Department of Medical Microbiology, Radboud University Medical Center, 6525 GA, Nijmegen, The Netherlands
| | - Marian J Broekhuizen
- Faculty of Veterinary Medicine, Utrecht University, 3584 CL, Utrecht, The Netherlands
| | - Els M Broens
- Faculty of Veterinary Medicine, Utrecht University, 3584 CL, Utrecht, The Netherlands
| | - Jaap A Wagenaar
- Faculty of Veterinary Medicine, Utrecht University, 3584 CL, Utrecht, The Netherlands
- Wageningen Bioveterinary Research, 8221 RA, Lelystad, The Netherlands
| | - Paul E Verweij
- Department of Medical Microbiology, Radboud University Medical Center, 6525 GA, Nijmegen, The Netherlands
- Radboudumc-CWZ Center of Expertise for Mycology, 6525 GA, Nijmegen, The Netherlands
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Garcete LAA, Martinez JER, Barrera DBV, Bonugli-Santos RC, Passarini MRZ. Biotechnological potential of microorganisms from landfill leachate: isolation, antibiotic resistance and leachate discoloration. AN ACAD BRAS CIENC 2022; 94:e20210642. [PMID: 35857963 DOI: 10.1590/0001-3765202220210642] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2021] [Accepted: 10/08/2021] [Indexed: 11/21/2022] Open
Abstract
Disposal of municipal solid waste (MSW) can be considered a risk to human health representing a great environmental problem in several countries. MSW landfills are a significant source of toxic elements in the environment. Microorganisms able to thriving in leachate wastewater may exhibit metabolic machinery to synthesize a wide range of enzymes able to degrade and/or discolor toxic compounds from leachate. The use of non-pathogenic microbial cells for human health, recovered from leachate for biotechnological application, can be considered a promising approach in bioremediation processes of toxic compounds found in these environments. The present work aimed to the isolation, antibiotic resistance evaluation and leachate discoloration by microorganisms isolated from landfill leachate of Foz do Iguaçu. Forty bacteria and fifteen filamentous fungi were isolated. From these, six bacterial showed resistance at least one tested antibiotic, while six fungal isolates showed resistance to the antimycotic nystatin. CCMIBA_4L (unidentified bacteria) and Paecilomyces sp. CCMIBA_5N, were able to discolor 19.15% and 25.26% of the leachate, respectively. The results of the present work encourage future studies to characterize the enzymes involved in the discoloration and degradation of the leachate. The findings demonstrated the potential for the use of microorganisms from landfill leachate as bioremediation tools.
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Affiliation(s)
- Leticia A A Garcete
- Universidade Federal da Integração Latino-Americana (Unila), Laboratório de Biotecnologia Ambiental, Av. Tarquínio Joslin dos Santos, 1000, Jd Universitário, 85870-901 Foz do Iguaçu, PR, Brazil
| | - Johana E R Martinez
- Universidade Federal da Integração Latino-Americana (Unila), Laboratório de Biotecnologia Ambiental, Av. Tarquínio Joslin dos Santos, 1000, Jd Universitário, 85870-901 Foz do Iguaçu, PR, Brazil
| | - Dahiana B V Barrera
- Universidade Federal da Integração Latino-Americana (Unila), Laboratório de Biotecnologia Ambiental, Av. Tarquínio Joslin dos Santos, 1000, Jd Universitário, 85870-901 Foz do Iguaçu, PR, Brazil
| | - Rafaella C Bonugli-Santos
- Universidade Federal da Integração Latino-Americana (Unila), Laboratório de Biotecnologia Ambiental, Av. Tarquínio Joslin dos Santos, 1000, Jd Universitário, 85870-901 Foz do Iguaçu, PR, Brazil
| | - Michel R Z Passarini
- Universidade Federal da Integração Latino-Americana (Unila), Laboratório de Biotecnologia Ambiental, Av. Tarquínio Joslin dos Santos, 1000, Jd Universitário, 85870-901 Foz do Iguaçu, PR, Brazil
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Vargas-Junior V, Antunes D, Guimarães AC, Caffarena E. In silico investigation of riboswitches in fungi: structural and dynamical insights into TPP riboswitches in Aspergillus oryzae. RNA Biol 2022; 19:90-103. [PMID: 34989318 PMCID: PMC8786325 DOI: 10.1080/15476286.2021.2015174] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022] Open
Abstract
Riboswitches are RNA sensors affecting post-transcriptional processes through their ability to bind to small molecules. Thiamine pyrophosphate (TPP) riboswitch plays a crucial role in regulating genes involved in synthesizing or transporting thiamine and phosphorylated derivatives in bacteria, archaea, plants, and fungi. Although TPP riboswitch is reasonably well known in bacteria, there is a gap in the knowledge of the fungal TPP riboswitches structure and dynamics, involving mainly sequence variation and TPP interaction with the aptamers. On the other hand, the increase of fungal infections and antifungal resistance raises the need for new antifungal therapies. In this work, we used computational approaches to build three-dimensional models for the three TPP riboswitches identified in Aspergillus oryzae, in which we studied their structure, dynamics, and binding free energy change (ΔGbind) with TPP. Interaction patterns between the TPP and the surrounding nucleotides were conserved among the three models, evidencing high structural conservation. Furthermore, we show that the TPP riboswitch from the A. oryzae NMT1 gene behaves similarly to the E. coli thiA gene concerning the ΔGbind. In contrast, mutations in the fungal TPP riboswitches from THI4 and the nucleoside transporter genes led to structural differences, affecting the binding-site volume, hydrogen bond occupancy, and ΔGbind. Besides, the number of water molecules surrounding TPP influenced the ΔGbind considerably. Notably, our ΔGbind estimation agreed with previous experimental data, reinforcing the relationship between sequence conservation and TPP interaction.
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Affiliation(s)
- Valdemir Vargas-Junior
- Computational Biophysics and Molecular Modeling Group, Scientific Computing Programme (Procc - Fiocruz), Rio de Janeiro, Brazil
| | - Deborah Antunes
- Laboratory of Functional Genomics and Bioinformatics, Oswaldo Cruz Institute (Ioc - Fiocruz), Rio de Janeiro, Brazil
| | - Ana Carolina Guimarães
- Laboratory of Functional Genomics and Bioinformatics, Oswaldo Cruz Institute (Ioc - Fiocruz), Rio de Janeiro, Brazil
| | - Ernesto Caffarena
- Computational Biophysics and Molecular Modeling Group, Scientific Computing Programme (Procc - Fiocruz), Rio de Janeiro, Brazil
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Arné P, Risco-Castillo V, Jouvion G, Le Barzic C, Guillot J. Aspergillosis in Wild Birds. J Fungi (Basel) 2021; 7:241. [PMID: 33807065 PMCID: PMC8004873 DOI: 10.3390/jof7030241] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2020] [Revised: 03/17/2021] [Accepted: 03/19/2021] [Indexed: 01/23/2023] Open
Abstract
The ubiquitous fungi belonging to the genus Aspergillus are able to proliferate in a large number of environments on organic substrates. The spores of these opportunistic pathogens, when inhaled, can cause serious and often fatal infections in a wide variety of captive and free-roaming wild birds. The relative importance of innate immunity and the level of exposure in the development of the disease can vary considerably between avian species and epidemiological situations. Given the low efficacy of therapeutic treatments, it is essential that breeders or avian practitioners know the conditions that favor the emergence of Aspergillosis in order to put adequate preventive measures in place.
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Affiliation(s)
- Pascal Arné
- Ecole Nationale Vétérinaire d’Alfort, Centre Hospitalier Universitaire Vétérinaire de la Faune Sauvage (Chuv-FS), 94700 Maisons-Alfort, France; (V.R.-C.); (C.L.B.)
- Ecole Nationale Vétérinaire d’Alfort, Dynamic Research Group UPEC, EnvA, USC Anses, 94700 Maisons-Alfort, France; (G.J.); (J.G.)
| | - Veronica Risco-Castillo
- Ecole Nationale Vétérinaire d’Alfort, Centre Hospitalier Universitaire Vétérinaire de la Faune Sauvage (Chuv-FS), 94700 Maisons-Alfort, France; (V.R.-C.); (C.L.B.)
- Ecole Nationale Vétérinaire d’Alfort, Dynamic Research Group UPEC, EnvA, USC Anses, 94700 Maisons-Alfort, France; (G.J.); (J.G.)
- Ecole Nationale Vétérinaire d’Alfort, Biopôle Alfort, 94700 Maisons-Alfort, France
| | - Grégory Jouvion
- Ecole Nationale Vétérinaire d’Alfort, Dynamic Research Group UPEC, EnvA, USC Anses, 94700 Maisons-Alfort, France; (G.J.); (J.G.)
- Ecole Nationale Vétérinaire d’Alfort, Biopôle Alfort, 94700 Maisons-Alfort, France
| | - Cécile Le Barzic
- Ecole Nationale Vétérinaire d’Alfort, Centre Hospitalier Universitaire Vétérinaire de la Faune Sauvage (Chuv-FS), 94700 Maisons-Alfort, France; (V.R.-C.); (C.L.B.)
| | - Jacques Guillot
- Ecole Nationale Vétérinaire d’Alfort, Dynamic Research Group UPEC, EnvA, USC Anses, 94700 Maisons-Alfort, France; (G.J.); (J.G.)
- Ecole Nationale Vétérinaire d’Alfort, Biopôle Alfort, 94700 Maisons-Alfort, France
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Aspergillosis, Avian Species and the One Health Perspective: The Possible Importance of Birds in Azole Resistance. Microorganisms 2020; 8:microorganisms8122037. [PMID: 33352774 PMCID: PMC7767009 DOI: 10.3390/microorganisms8122037] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2020] [Revised: 12/11/2020] [Accepted: 12/17/2020] [Indexed: 12/30/2022] Open
Abstract
The One Health context considers health based on three pillars: humans, animals, and environment. This approach is a strong ally in the surveillance of infectious diseases and in the development of prevention strategies. Aspergillus spp. are fungi that fit substantially in this context, in view of their ubiquity, as well as their importance as plant pathogens, and potentially fatal pathogens for, particularly, humans and avian species. In addition, the emergence of azole resistance, mainly in Aspergillus fumigatus sensu stricto, and the proven role of fungicides widely used on crops, reinforces the need for a multidisciplinary approach to this problem. Avian species are involved in short and long distance travel between different types of landscapes, such as agricultural fields, natural environments and urban environments. Thus, birds can play an important role in the dispersion of Aspergillus, and of special concern, azole-resistant strains. In addition, some bird species are particularly susceptible to aspergillosis. Therefore, avian aspergillosis could be considered as an environmental health indicator. In this review, aspergillosis in humans and birds will be discussed, with focus on the presence of Aspergillus in the environment. We will relate these issues with the emergence of azole resistance on Aspergillus. These topics will be therefore considered and reviewed from the “One Health” perspective.
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