1
|
Jawad LA, Dizaj LP, Esmaeili HR. Osteological features of some clupeid fishes (Teleostei: Clupeiformes) of Iran. Anat Histol Embryol 2024; 53:e13070. [PMID: 39031825 DOI: 10.1111/ahe.13070] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2024] [Revised: 04/30/2024] [Accepted: 05/28/2024] [Indexed: 07/22/2024]
Abstract
This paper presents the conclusions of a comparative analysis of six osteological features: the Structure of the vertebral column, the morphology of the predorsal bones, the vertebral column regionalization, the pterygiophore interdigitation with neural spines of dorsal fin, the pterygiophores interdigitation of with the haemal spines of the anal fin, and the intermuscular bones (IMB) and hypomerals (HM) of 12 clupeid species of the families Alosidae, Dorosomatidae, Dussumieridae and Ehiravidae. Conceivable taxonomically beneficial osteological features are nominated and utilized to discrete the clupeid species explored. Formulae for the structure of the vertebral column, the dorsal- and anal-fin pterygiophores' interdigitation with the neural and haemal spines of the vertebrae are established. These morphological descriptive traits disclose a morphotype that may be related to the mode of swimming of the species searched. The morphological study of the vertebral column of the species in question permits the division of this bony structure into six morphologically different regions. This regionalization is more intricate than the classical division in abdominal and caudal parts only.
Collapse
Affiliation(s)
- Laith A Jawad
- School of Environmental and Animal Sciences, Unitec Institute of Technology, Auckland, New Zealand
| | - Leyli Purrafee Dizaj
- Ichthyology and Molecular Systematics Research Laboratory, Zoology Section, Department of Biology, School of Science, Shiraz University, Shiraz, Iran
| | - Hamid Reza Esmaeili
- Ichthyology and Molecular Systematics Research Laboratory, Zoology Section, Department of Biology, School of Science, Shiraz University, Shiraz, Iran
| |
Collapse
|
2
|
Liu B, Li J, Peng Y, Zhang K, Liu Q, Jin X, Zheng S, Wang Y, Gong L, Liu L, Lü Z, Liu Y. Chromosome-level genome assembly and population genomic analysis reveal evolution and local adaptation in common hairfin anchovy (Setipinna tenuifilis). Mol Ecol 2024; 33:e17067. [PMID: 37434292 DOI: 10.1111/mec.17067] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2022] [Revised: 04/23/2023] [Accepted: 06/19/2023] [Indexed: 07/13/2023]
Abstract
Understanding the genetic structure and the factors associated with adaptive diversity has significant implications for the effective management of wild populations under threat from overfishing and climate change. The common hairfin anchovy (Setipinna tenuifilis) is an economically and ecologically important pelagic fish species, spanning a broad latitudinal gradient along marginal seas of the Northwest Pacific. In this study, we constructed the first reference genome of S. tenuifilis using PacBio long reads and high-resolution chromosome conformation capture (Hi-C) technology. The assembled genome was 798.38 Mb with a contig N50 of 1.43 Mb and a scaffold N50 of 32.42 Mb, which were anchored onto 24 pseudochromosomes. A total of 22,019 genes were functionally annotated, which accounted for 95.27% of the predicted protein-coding genes. Chromosomal collinearity analysis revealed chromosome fusion or fission events in Clupeiformes species. Three genetic groups of S. tenuifilis were revealed along the Chinese coast using restriction site-associated DNA sequencing (RADseq). We investigated the influence of four bioclimatic variables as potential drivers of adaptive divergence in S. tenuifilis, suggesting that these environmental variables, especially sea surface temperature, may play important roles as drivers of spatially varying selection for S. tenuifilis. We also identified candidate functional genes underlying adaptive mechanisms and ecological tradeoffs using redundancy analysis (RDA) and BayeScan analysis. In summary, this study sheds light on the evolution and spatial patterns of genetic variation of S. tenuifilis, providing a valuable genomic resource for further biological and genetic studies on this species and other closely related Clupeiformes.
Collapse
Affiliation(s)
- Bingjian Liu
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Jiasheng Li
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Ying Peng
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Kun Zhang
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Qi Liu
- Wuhan Onemore-tech Co., Ltd., Wuhan, China
| | - Xun Jin
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Sixu Zheng
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Yunpeng Wang
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Li Gong
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Liqin Liu
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Zhenming Lü
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Yifan Liu
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| |
Collapse
|
3
|
Milec LJM, Vanhove MPM, Bukinga FM, De Keyzer ELR, Kapepula VL, Masilya PM, Mulimbwa N, Wagner CE, Raeymaekers JAM. Complete mitochondrial genomes and updated divergence time of the two freshwater clupeids endemic to Lake Tanganyika (Africa) suggest intralacustrine speciation. BMC Ecol Evol 2022; 22:127. [PMID: 36329403 PMCID: PMC9635120 DOI: 10.1186/s12862-022-02085-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2022] [Accepted: 10/20/2022] [Indexed: 11/06/2022] Open
Abstract
Background The hydrogeological history of Lake Tanganyika paints a complex image of several colonization and adaptive radiation events. The initial basin was formed around 9–12 million years ago (MYA) from the predecessor of the Malagarasi–Congo River and only 5–6 MYA, its sub-basins fused to produce the clear, deep waters of today. Next to the well-known radiations of cichlid fishes, the lake also harbours a modest clade of only two clupeid species, Stolothrissatanganicae and Limnothrissamiodon. They are members of Pellonulini, a tribe of clupeid fishes that mostly occur in freshwater and that colonized West and Central-Africa during a period of high sea levels during the Cenozoic. There is no consensus on the phylogenetic relationships between members of Pellonulini and the timing of the colonization of Lake Tanganyika by clupeids. Results We use short-read next generation sequencing of 10X Chromium libraries to sequence and assemble the full mitochondrial genomes of S.tanganicae and L.miodon. We then use Maximum likelihood and Bayesian inference to place them into the phylogeny of Pellonulini and other clupeiforms, taking advantage of all available full mitochondrial clupeiform genomes. We identify Potamothrissaobtusirostris as the closest living relative of the Tanganyika sardines and confirm paraphyly for Microthrissa. We estimate the divergence of the Tanganyika sardines around 3.64 MYA [95% CI: 0.99, 6.29], and from P.obtusirostris around 10.92 MYA [95% CI: 6.37–15.48]. Conclusions These estimates imply that the ancestor of the Tanganyika sardines diverged from a riverine ancestor and entered the proto-lake Tanganyika around the time of its formation from the Malagarasi–Congo River, and diverged into the two extant species at the onset of deep clearwater conditions. Our results prompt a more thorough examination of the relationships within Pellonulini, and the new mitochondrial genomes provide an important resource for the future study of this tribe, e.g. as a reference for species identification, genetic diversity, and macroevolutionary studies. Supplementary Information The online version contains supplementary material available at 10.1186/s12862-022-02085-8.
Collapse
Affiliation(s)
- Leona J. M. Milec
- grid.465487.cFaculty of Biosciences and Aquaculture, Nord University, Universitetsalléen 11, 8026 Bodø, Norway ,grid.12155.320000 0001 0604 5662Centre for Environmental Sciences, Research Group Zoology: Biodiversity and Toxicology, Hasselt University, Agoralaan Gebouw D, 3590 Diepenbeek, Belgium
| | - Maarten P. M. Vanhove
- grid.12155.320000 0001 0604 5662Centre for Environmental Sciences, Research Group Zoology: Biodiversity and Toxicology, Hasselt University, Agoralaan Gebouw D, 3590 Diepenbeek, Belgium ,grid.5596.f0000 0001 0668 7884Laboratory of Biodiversity and Evolutionary Genomics, Department of Biology, KU Leuven, Charles Déberiotstraat 32, 3000 Leuven, Belgium
| | - Fidel Muterezi Bukinga
- Centre de Recherche en Hydrobiologie-Uvira (CRH-Uvira), Uvira, Sud-Kivu Democratic Republic of Congo
| | - Els L. R. De Keyzer
- grid.5596.f0000 0001 0668 7884Laboratory of Biodiversity and Evolutionary Genomics, Department of Biology, KU Leuven, Charles Déberiotstraat 32, 3000 Leuven, Belgium ,grid.5284.b0000 0001 0790 3681Evolutionary Ecology Group (EVECO), Universiteit Antwerpen, Campus Drie Eiken, Universiteitsplein 1, 2610 Wilrijk, Belgium
| | - Vercus Lumami Kapepula
- Centre de Recherche en Hydrobiologie-Uvira (CRH-Uvira), Uvira, Sud-Kivu Democratic Republic of Congo ,grid.7942.80000 0001 2294 713XUniversité Catholique de Louvain, Place Sainte Barbe 2, 1348 Louvain-la-Neuve, Belgium
| | - Pascal Mulungula Masilya
- Centre de Recherche en Hydrobiologie-Uvira (CRH-Uvira), Uvira, Sud-Kivu Democratic Republic of Congo ,Unité d’Enseignement et de Recherche en Hydrobiologie Appliquée (UERHA)-ISP/Bukavu, Bukavu, Sud-Kivu Democratic Republic of Congo
| | - N’Sibula Mulimbwa
- Centre de Recherche en Hydrobiologie-Uvira (CRH-Uvira), Uvira, Sud-Kivu Democratic Republic of Congo
| | - Catherine E. Wagner
- grid.135963.b0000 0001 2109 0381University of Wyoming, 1000 E University Ave, Laramie, WY 82071 USA
| | - Joost A. M. Raeymaekers
- grid.465487.cFaculty of Biosciences and Aquaculture, Nord University, Universitetsalléen 11, 8026 Bodø, Norway
| |
Collapse
|
4
|
Wang Q, Purrafee Dizaj L, Huang J, Kumar Sarker K, Kevrekidis C, Reichenbacher B, Reza Esmaeili H, Straube N, Moritz T, Li C. Molecular phylogenetics of the Clupeiformes based on exon-capture data and a new classification of the order. Mol Phylogenet Evol 2022; 175:107590. [PMID: 35850406 DOI: 10.1016/j.ympev.2022.107590] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2022] [Revised: 06/21/2022] [Accepted: 07/12/2022] [Indexed: 10/17/2022]
Abstract
The Clupeiformes, including among others herrings, anchovies, shads and menhadens are ecologically and commercially important, yet their phylogenetic relationships are still controversial. Previous classification of Clupeiformes were based on morphological characters or lack of synapomorphic characters. More recent studies based on molecular data as well as new morphological evidence are keeping challenging their phylogenetic relations and there is still no consensus on many interrelationships within the Clupeiformes. In this study, we collected nuclear sequence data from 4,434 single-copy protein coding loci using a gene-capture method. We obtained a robust phylogeny based on 1,165 filtered loci with less than 30 % missing data. Our major findings include: 1) reconfirmation of monophyly of the Clupeiformes, that is, Denticipitidae is sister to all other clupeiforms; 2) the polyphyletic nature of dussumieriids and early branching of Spratelloididae from all other clupeoids were confirmed using datasets curated for less missing data and more balanced base composition in the respective taxa. The next branching clade is the monophyletic Engraulidae. Pristigasteridae also is monophyletic, but it was nested in the previously defined "Clupeidae". Within Pristigasteridae there is no support for monophyletic Pelloninae. Chirocentrus is close to Dussumieria and not to engraulids. The miniaturized Sundasalanx is placed close to the ehiravine Clupeonella, however, with a relatively deep split. The genus Clupea, is not part of the diverse "Clupeidae", but part of a clade containing additionally Sprattus and Etrumeus. Within the crown group clades, Alosidae and Dorosomatidae are retrieved as sister clades. Based on new fossil calibration points, we found that major lineages of the clupeiforms diverged in the late Cretaceous and early Paleogene. The extinction event at the end of the Cretaceous may have created ecological niches, which could have fueled the diversification of clupeiform fishes. Based on the strong evidence of the present study, we propose an updated classification of Clupeiformes consisting of ten families: Denticipitidae; Spratelloididae; Engraulidae (Engraulinae + Coiliinae); Clupeidae; Chirocentridae; Dussumieriidae; Pristigasteridae; Ehiravidae; Alosidae, Dorosomatidae.
Collapse
Affiliation(s)
- Qian Wang
- East China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Shanghai 200090, China; Shanghai Universities Key Laboratory of Marine Animal Taxonomy and Evolution, Shanghai Ocean University, Shanghai 201306, China.
| | - Leyli Purrafee Dizaj
- Ichthyology and Molecular Systematics Research Laboratory, Zoology Section, Department of Biology, School of Science, Shiraz University, Shiraz, Iran.
| | - Junman Huang
- Shanghai Universities Key Laboratory of Marine Animal Taxonomy and Evolution, Shanghai Ocean University, Shanghai 201306, China; Engineering Research Center of Environmental DNA and Ecological Water Health Assessment, Shanghai Ocean University, Shanghai 201306, China.
| | - Kishor Kumar Sarker
- Shanghai Universities Key Laboratory of Marine Animal Taxonomy and Evolution, Shanghai Ocean University, Shanghai 201306, China; Engineering Research Center of Environmental DNA and Ecological Water Health Assessment, Shanghai Ocean University, Shanghai 201306, China.
| | - Charalampos Kevrekidis
- Ludwig-Maximilians-Universität München, Department für Geo- und Umweltwissenschaften, Paläontologie & Geobiologie, Richard-Wagner-Str. 10, 80333 Munich, Germany.
| | - Bettina Reichenbacher
- Ludwig-Maximilians-Universität München, Department für Geo- und Umweltwissenschaften, Paläontologie & Geobiologie, Richard-Wagner-Str. 10, 80333 Munich, Germany; GeoBio-Center, Ludwig-Maximilians-Universität München, Munich, Germany.
| | - Hamid Reza Esmaeili
- Ichthyology and Molecular Systematics Research Laboratory, Zoology Section, Department of Biology, School of Science, Shiraz University, Shiraz, Iran.
| | - Nicolas Straube
- University Museum, Department of Natural History, University of Bergen, Norway.
| | - Timo Moritz
- Deutsches Meeresmuseum, Katharinenberg 14-20, 18439 Stralsund, Germany; Institute of Biological Sciences, University of Rostock, Albert-Einstein-Straße 3, 18059 Rostock, Germany.
| | - Chenhong Li
- Shanghai Universities Key Laboratory of Marine Animal Taxonomy and Evolution, Shanghai Ocean University, Shanghai 201306, China; Engineering Research Center of Environmental DNA and Ecological Water Health Assessment, Shanghai Ocean University, Shanghai 201306, China.
| |
Collapse
|
5
|
de Brito V, Betancur-R R, Burns MD, Buser TJ, Conway KW, Fontenelle JP, Kolmann MA, McCraney WT, Thacker CE, Bloom DD. Patterns of Phenotypic Evolution Associated with Marine/Freshwater Transitions in Fishes. Integr Comp Biol 2022; 62:406-423. [PMID: 35675320 DOI: 10.1093/icb/icac085] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2022] [Revised: 06/01/2022] [Accepted: 06/01/2022] [Indexed: 11/12/2022] Open
Abstract
Evolutionary transitions between marine and freshwater ecosystems have occurred repeatedly throughout the phylogenetic history of fishes. The theory of ecological opportunity predicts that lineages that colonize species-poor regions will have greater potential for phenotypic diversification than lineages invading species-rich regions. Thus, transitions between marine and freshwaters may promote phenotypic diversification in trans-marine/freshwater fish clades. We used phylogenetic comparative methods to analyze body size data in nine major fish clades that have crossed the marine/freshwater boundary. We explored how habitat transitions, ecological opportunity, and community interactions influenced patterns of phenotypic diversity. Our analyses indicated that transitions between marine and freshwater habitats did not drive body size evolution, and there are few differences in body size between marine and freshwater lineages. We found that body size disparity in freshwater lineages is not correlated with the number of independent transitions to freshwaters. We found a positive correlation between body size disparity and overall species richness of a given area, and a negative correlation between body size disparity and diversity of closely related species. Our results indicate that the diversity of incumbent freshwater species does not restrict phenotypic diversification, but the diversity of closely related taxa can limit body size diversification. Ecological opportunity arising from colonization of novel habitats does not seem to have a major effect in the trajectory of body size evolution in trans-marine/freshwater clades. Moreover, competition with closely related taxa in freshwaters has a greater effect than competition with distantly related incumbent species.
Collapse
Affiliation(s)
- Victor de Brito
- Department of Biological Sciences, Western Michigan University, 1903 W Michigan Ave, Kalamazoo, MI 49008-5410, USA
| | - Ricardo Betancur-R
- Department of Biology, University of Oklahoma, 730 Van Vleet Oval, Room 314, Norman, OK 73019, USA
| | - Michael D Burns
- Cornell Lab of Ornithology, Cornell Museum of Vertebrates, Cornell University, 159 Sapsucker Woods Road, Ithaca, NY 14850-1923, USA
| | - Thaddaeus J Buser
- Department of BioSciences, Rice University, W100 George R. Brown Hall, 6100 Main Street, Houston, TX 77005, USA
| | - Kevin W Conway
- Department of Ecology and Conservation Biology and Biodiversity Research and Teaching Collections, Texas A&M University, College Station, TX 77843, USA
| | - João Pedro Fontenelle
- Institute of Forestry and Conservation, University of Toronto, 33 Willcocks St., Toronto, ON M5S 3E8, Canada
| | - Matthew A Kolmann
- Museum of Paleontology, Biological Sciences Building, University of Michigan, 1105 North University Ave, Ann Arbor, MI 48109-1085, USA
| | - W Tyler McCraney
- Department of Ecology and Evolutionary Biology, University of California, 612 Charles E. Young Drive South, Los Angeles, CA 90095-7246, USA
| | - Christine E Thacker
- Research and Collections, Section of Ichthyology, Natural History Museum of Los Angeles County, 900 Exposition Blvd., Los Angeles, CA 90007, USA.,Vertebrate Zoology, Santa Barbara Museum of Natural History, 2559 Puesta del Sol, Santa Barbara, CA 93105, USA
| | - Devin D Bloom
- Department of Biological Sciences, Western Michigan University, 1903 W Michigan Ave, Kalamazoo, MI 49008-5410, USA.,Institute of the Environment and Sustainability, Western Michigan University, 1903 W Michigan Ave, Kalamazoo, MI 49008-5419, USA
| |
Collapse
|
6
|
Al Jufaili SM, Echreshavi S, Esmaeili HR, Al Alawi MK. Scales and otoliths as identity cards of the Indian oil sardine
Sardinella longiceps
(Teleostei: Clupeiformes) populations: Ultrastructure and ornamentation characteristics using light and scanning electron microscopy. ACTA ZOOL-STOCKHOLM 2022. [DOI: 10.1111/azo.12418] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Saud M. Al Jufaili
- Department of Marine Science and Fisheries Sultan Qaboos University Muscat Oman
- Natural and Medical Sciences Research Center University of Nizwa Birkat Almouz Oman
| | - Sorour Echreshavi
- Ichthyology and Molecular Systematics Research Laboratory, Zoology Section Department of Biology School of Science Shiraz University Shiraz Iran
| | - Hamid Reza Esmaeili
- Ichthyology and Molecular Systematics Research Laboratory, Zoology Section Department of Biology School of Science Shiraz University Shiraz Iran
| | | |
Collapse
|
7
|
França VFC, Severi W. Ecomorphological relations of sympatric juveniles of Clupeiformes from a Brazilian sandy beach. IHERINGIA. SERIE ZOOLOGIA 2022. [DOI: 10.1590/1678-4766e2022011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
ABSTRACT Surf zones are important for early life stages of several fish species for presenting characteristics such as high phytoplanktonic production, diverse food availability and shelter against predators. The action of waves in this environment provides nutrient cycling and increase the turbidity making surf zones ideal nursery environments for diverse species of fish, including clupeiforms. Clupeiform species have a great ecological and economic value for being abundant fish in tropical sandy beaches surf zones with significant fisheries importance. Studies about their feeding ecology and environment use are relevant, and one of the methods improving this knowledge is the application of ecomorphological analyses, which helps understanding species ecological interactions and their adaptations. In this context, the present study aimed to identify the ecomorphological relations and infer about the feeding ecology of eight sympatric clupeiform species in a Brazilian tropical sandy beach. Ten ecomorphological variables were analyzed of individuals belonging to the species Anchoa tricolor (Spix & Agassiz, 1829), Anchoa januaria (Steindachner, 1879), Anchovia clupeoides (Swainson, 1839), Anchoviella lepidentostole (Fowler, 1911), Lycengraulis grossidens (Spix & Agassiz, 1829), Chirocentrodon bleekerianus (Poey, 1867), Harengula clupeola (Cuvier, 1829) and Opisthonema oglinum (Lesueur, 1818), whose values were employed in a principal component analysis (PCA) with the two first axis explaining 58.92% of the total variance. A high morphological overlap between the species of Engraulidae was observed with the exception of A. clupeoides, which differed from the others for presenting higher values of the compression index and caudal peduncle compression index. The Clupeidae species differed from the other families due to higher values of relative height and relative head length which also showed differences between the species themselves, having H. clupeola presented the highest values of these variables. The representative of Pristigasteridae showed an intermediate overlap between the species of the other families because of its highly compressed body but with low scores of relative height, caudal peduncle relative length and mouth aspect ratio. The morphological differentiation between the families and even between species from the same family indicates niche divergences, showing that besides their phylogenetical proximity there are differences in their ecological interactions which possibly contribute to their coexistence.
Collapse
|
8
|
OLIVEIRA LUCASSDE, CAJADO RUINERISA, SANTOS LUANRDOS, ZACARDI DIEGOM. Structure of the ichthyoplankton community in a Neotropical floodplain lake affected by environmental degradation. AN ACAD BRAS CIENC 2022; 94:e20201598. [DOI: 10.1590/0001-3765202220201598] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2020] [Accepted: 04/21/2021] [Indexed: 01/06/2023] Open
Affiliation(s)
| | - RUINERIS A. CAJADO
- Universidade Federal do Oeste do Pará (UFOPA), Brazil; Universidade Federal do Pará (UFPA), Brazil
| | | | - DIEGO M. ZACARDI
- Universidade Federal do Oeste do Pará (UFOPA), Brazil; Universidade Federal do Pará (UFPA), Brazil
| |
Collapse
|
9
|
Purrafee Dizaj L, Esmaeili HR, Jawad L, Ebrahimi M, Gholamhosseini A, Valinasab T. Taxonomic significance of vertebral column and caudal skeleton of clupeid fishes (Teleostei: Clupeiformes) of Iran. ACTA ZOOL-STOCKHOLM 2020. [DOI: 10.1111/azo.12365] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Leyli Purrafee Dizaj
- Ichthyology and Molecular Systematics Laboratory Zoology Section Biology Department School of Science Shiraz University Shiraz Iran
| | - Hamid Reza Esmaeili
- Ichthyology and Molecular Systematics Laboratory Zoology Section Biology Department School of Science Shiraz University Shiraz Iran
| | - Laith Jawad
- Consultant (Private Researcher) Wellington New Zealand
| | - Mehregan Ebrahimi
- Ichthyology and Molecular Systematics Laboratory Zoology Section Biology Department School of Science Shiraz University Shiraz Iran
| | - Ali Gholamhosseini
- Ichthyology and Molecular Systematics Laboratory Zoology Section Biology Department School of Science Shiraz University Shiraz Iran
| | - Tooraj Valinasab
- Agricultural Research, Education and Extension Organization Iranian Fisheries Science Research Institute Tehran Iran
| |
Collapse
|
10
|
Albert JS, Tagliacollo VA, Dagosta F. Diversification of Neotropical Freshwater Fishes. ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS 2020. [DOI: 10.1146/annurev-ecolsys-011620-031032] [Citation(s) in RCA: 76] [Impact Index Per Article: 19.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Neotropical freshwater fishes (NFFs) constitute the most diverse continental vertebrate fauna on Earth, with more than 6,200 named species compressed into an aquatic footprint <0.5% of the total regional land-surface area and representing the greatest phenotypic disparity and functional diversity of any continental ichthyofauna. Data from the fossil record and time-calibrated molecular phylogenies indicate that most higher taxa (e.g., genera, families) diversified relatively continuously through the Cenozoic, across broad geographic ranges of the South American platform. Biodiversity data for most NFF clades support a model of continental radiation rather than adaptive radiation, in which speciation occurs mainly in allopatry, and speciation and adaptation are largely decoupled. These radiations occurred under the perennial influence of river capture and sea-level oscillations, which episodically fragmented and merged portions of adjacent river networks. The future of the NFF fauna into the Anthropocene is uncertain, facing numerous threats at local, regional, and continental scales.
Collapse
Affiliation(s)
- James S. Albert
- Department of Biology, University of Louisiana at Lafayette, Louisiana 70504, USA
| | | | - Fernando Dagosta
- Faculty of Biological and Environmental Sciences, Universidade Federal da Grande Dourados, Brazil 79825-070
| |
Collapse
|
11
|
Purrafee Dizaj L, Esmaeili HR, Teimori A. Comparative otolith morphology of clupeids from the Iranian brackish and marine resources (Teleostei: Clupeiformes). ACTA ZOOL-STOCKHOLM 2020. [DOI: 10.1111/azo.12353] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Affiliation(s)
- Leyli Purrafee Dizaj
- Ichthyology and Molecular Systematics Research Laboratory, Zoology Section Department of Biology School of Science Shiraz University Shiraz Iran
| | - Hamid Reza Esmaeili
- Ichthyology and Molecular Systematics Research Laboratory, Zoology Section Department of Biology School of Science Shiraz University Shiraz Iran
| | - Azad Teimori
- Department of Biology Faculty of Sciences Shahid Bahonar University of Kerman Kerman Iran
| |
Collapse
|
12
|
Purrafee Dizaj L, Esmaeili HR, Teimori A, Abbasi K. Comparative microscopic examination of scales in 21 clupeid species from the Caspian Sea and the Indo-Pacific regions. Micron 2020; 137:102911. [PMID: 32593860 DOI: 10.1016/j.micron.2020.102911] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2020] [Revised: 06/12/2020] [Accepted: 06/12/2020] [Indexed: 11/29/2022]
Abstract
The clupeid fishes are large filter-feeding organisms and have diverse groups of trophic guilds and habitats. They are known for their special body scale, which is unique among the other teleost fishes. Here, we examined microscopic characteristics of scales in 21 clupeid species from four marine resources, including the Caspian Sea, the Persian Gulf and the Gulf of Oman (Indian Ocean) and South China Sea (Haian Islands and Shanwei, Pacific Ocean) to evaluate if the scale features could properly contribute to understanding the taxonomic relationships in these fishes. Typically, the studied scales were morphologically categorized into two types; circular (i.e., true circular, cordate, discoidal) and pentagonal. Also, it was found that the number and the orientation of radii and continuous striae, the presence of pores at the posterior field, overall shape, striations on the posterior field, and scale sizes could be used as suitable features to classify the clupeids in species and genus levels. The result of morphological analysis based on the scale characteristics was largely consistent with the phylogenetic relationships of the studied species. This highlighted that morphological characteristics of the clupeid scale could adequately contribute to the understanding of taxonomic relationships in this large group.
Collapse
Affiliation(s)
- Leyli Purrafee Dizaj
- Ichthyology and Molecular Systematics Research Laboratory, Zoology Section, Department of Biology, College of Sciences, Shiraz University, Shiraz, Iran
| | - Hamid Reza Esmaeili
- Ichthyology and Molecular Systematics Research Laboratory, Zoology Section, Department of Biology, College of Sciences, Shiraz University, Shiraz, Iran.
| | - Azad Teimori
- Department of Biology, Faculty of Sciences, Shahid Bahonar University of Kerman, Kerman, Iran.
| | - Keyvan Abbasi
- Inland Waters Aquaculture Research Center, Iranian Fisheries Sciences Research Institute, Agricultural Research, Education and Extension Organization, Bandar Anzali, Iran
| |
Collapse
|
13
|
Storm TJ, Nolan KE, Roberts EM, Sanderson SL. Oropharyngeal morphology related to filtration mechanisms in suspension-feeding American shad (Clupeidae). JOURNAL OF EXPERIMENTAL ZOOLOGY PART 2020; 333:493-510. [PMID: 32342660 DOI: 10.1002/jez.2363] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/21/2020] [Revised: 03/28/2020] [Accepted: 03/30/2020] [Indexed: 11/06/2022]
Abstract
To assess potential filtration mechanisms, scanning electron microscopy was used in a comprehensive quantification and analysis of the morphology and surface ultrastructure for all five branchial arches in the ram suspension-feeding fish, American shad (Alosa sapidissima, Clupeidae). The orientation of the branchial arches and the location of mucus cells on the gill rakers were more consistent with mechanisms of crossflow filtration and cross-step filtration rather than conventional dead-end sieving. The long, thin gill rakers could lead to a large area for the exit of water from the oropharyngeal cavity during suspension feeding (high fluid exit ratio). The substantial elongation of gill rakers along the dorsal-ventral axis formed d-type ribs with a groove aspect ratio of 0.5 and a Reynolds number of approximately 500, consistent with the potential operation of cross-step filtration. Mucus cell abundance differed significantly along the length of the raker and the height of the raker. The mucus cell abundance data and the observed sloughing of denticles along the gill raker margins closest to the interior of the oropharyngeal cavity suggest that gill raker growth may occur primarily at the raker tips, the denticle bases, and the internal raker margins along the length of the raker. These findings will be applied in ongoing experiments with 3D-printed physical models of fish oral cavities in flow tanks, and in future ecological studies on the diet and nutrition of suspension-feeding fishes.
Collapse
Affiliation(s)
- Timothy James Storm
- Department of Biology, William & Mary, Williamsburg, Virginia.,Oral and Maxillofacial Surgery, Geisinger Wyoming Valley Medical Center, Wilkes-Barre, Pennsylvania
| | - Katherine Ericson Nolan
- Department of Biology, William & Mary, Williamsburg, Virginia.,University Laboratory Animal Resources, The Ohio State University, Columbus, Ohio
| | - Erin Michele Roberts
- Department of Biology, William & Mary, Williamsburg, Virginia.,Fisheries, Animal, and Veterinary Science Department, University of Rhode Island, Kingston, Rhode Island
| | | |
Collapse
|
14
|
Kolmann MA, Burns MD, Ng JYK, Lovejoy NR, Bloom DD. Habitat transitions alter the adaptive landscape and shape phenotypic evolution in needlefishes (Belonidae). Ecol Evol 2020; 10:3769-3783. [PMID: 32313635 PMCID: PMC7160164 DOI: 10.1002/ece3.6172] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2020] [Revised: 02/06/2020] [Accepted: 02/18/2020] [Indexed: 01/10/2023] Open
Abstract
Habitat occupancy can have a profound influence on macroevolutionary dynamics, and a switch in major habitat type may alter the evolutionary trajectory of a lineage. In this study, we investigate how evolutionary transitions between marine and freshwater habitats affect macroevolutionary adaptive landscapes, using needlefishes (Belonidae) as a model system. We examined the evolution of body shape and size in marine and freshwater needlefishes and tested for phenotypic change in response to transitions between habitats. Using micro-computed tomographic (µCT) scanning and geometric morphometrics, we quantified body shape, size, and vertebral counts of 31 belonid species. We then examined the pattern and tempo of body shape and size evolution using phylogenetic comparative methods. Our results show that transitions from marine to freshwater habitats have altered the adaptive landscape for needlefishes and expanded morphospace relative to marine taxa. We provide further evidence that freshwater taxa attain reduced sizes either through dwarfism (as inferred from axial skeletal reduction) or through developmental truncation (as inferred from axial skeletal loss). We propose that transitions to freshwater habitats produce morphological novelty in response to novel prey resources and changes in locomotor demands. We find that repeated invasions of different habitats have prompted predictable changes in morphology.
Collapse
Affiliation(s)
- Matthew A. Kolmann
- Department of Biological SciencesGeorge Washington UniversityWashingtonDCUSA
- Friday Harbor LaboratoriesUniversity of WashingtonFriday HarborWAUSA
| | - Michael D. Burns
- Cornell Lab of OrnithologyCornell University Museum of VertebratesIthacaNYUSA
- Department of Biological SciencesWestern Michigan UniversityKalamazooMIUSA
| | - Justin Y. K. Ng
- School of Aquatic and Fishery SciencesUniversity of WashingtonSeattleWAUSA
| | - Nathan R. Lovejoy
- Department of Biological ScienceUniversity of Toronto ScarboroughTorontoONCanada
| | - Devin D. Bloom
- Department of Biological Sciences & Institute of the Environment and SustainabilityWestern Michigan UniversityKalamazooMIUSA
| |
Collapse
|
15
|
Bloom DD, Kolmann M, Foster K, Watrous H. Mode of miniaturisation influences body shape evolution in New World anchovies (Engraulidae). JOURNAL OF FISH BIOLOGY 2020; 96:194-201. [PMID: 31729024 DOI: 10.1111/jfb.14205] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2019] [Accepted: 11/14/2019] [Indexed: 06/10/2023]
Abstract
We explored the macroevolutionary dynamics of miniaturisation in New World anchovies by integrating a time-calibrated phylogeny, geometric morphometrics and phylogenetic comparative methods. We found that the paedomorphic species Amazonsprattus scintilla occupies a novel region of shape space, while the dwarf species Anchoviella manamensis has an overall shape consistent with other anchovies. We found that miniaturisation did not increase overall clade disparity in size or shape beyond the expectations of Brownian motion, nor were there differences in rates of size or shape evolution among clades. Overall, our study shows that while the mode of miniaturisation influences shape evolution, the phenotypic novelty produced by the evolution of miniaturisation did not seem to alter macroevolutionary dynamics.
Collapse
Affiliation(s)
- Devin D Bloom
- Department of Biological Sciences, Western Michigan University, Kalamazoo, Michigan, USA
- Institute of the Environment & Sustainability, Western Michigan University, Kalamazoo, Michigan, USA
| | - Matthew Kolmann
- Department of Biological Sciences, George Washington University, Washington, DC, USA
| | - Kimberly Foster
- Department of Biological Sciences, Western Michigan University, Kalamazoo, Michigan, USA
| | - Helen Watrous
- Department of Biological Sciences, Western Michigan University, Kalamazoo, Michigan, USA
| |
Collapse
|