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Madrazo-Moya CF, Cancino-Muñoz I, Cuevas-Córdoba B, González-Covarrubias V, Barbosa-Amezcua M, Soberón X, Muñiz-Salazar R, Martínez-Guarneros A, Bäcker C, Zarrabal-Meza J, Sampieri-Ramirez C, Enciso-Moreno A, Lauzardo M, Comas I, Zenteno-Cuevas R. Whole genomic sequencing as a tool for diagnosis of drug and multidrug-resistance tuberculosis in an endemic region in Mexico. PLoS One 2019; 14:e0213046. [PMID: 31166945 PMCID: PMC6550372 DOI: 10.1371/journal.pone.0213046] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2019] [Accepted: 05/16/2019] [Indexed: 02/07/2023] Open
Abstract
Background Whole genome sequencing (WGS) has been proposed as a tool for diagnosing drug resistance in tuberculosis. However, reports of its effectiveness in endemic countries with important numbers of drug resistance are scarce. The goal of this study was to evaluate the effectiveness of this procedure in isolates from a tuberculosis endemic region in Mexico. Methods WGS analysis was performed in 81 tuberculosis positive clinical isolates with a known phenotypic profile of resistance against first-line drugs (isoniazid, rifampin, ethambutol, pyrazinamide and streptomycin). Mutations related to drug resistance were identified for each isolate; drug resistant genotypes were predicted and compared with the phenotypic profile. Genotypes and transmission clusters based on genetic distances were also characterized. Findings Prediction by WGS analysis of resistance against isoniazid, rifampicin, ethambutol, pyrazinamide and streptomycin showed sensitivity values of 84%, 96%, 71%, 75% and 29%, while specificity values were 100%, 94%, 90%, 90% and 98%, respectively. Prediction of multidrug resistance showed a sensitivity of 89% and specificity of 97%. Moreover, WGS analysis revealed polymorphisms related to second-line drug resistance, enabling classification of eight and two clinical isolates as pre- and extreme drug-resistant cases, respectively. Lastly, four lineages were identified in the population (L1, L2, L3 and L4). The most frequent of these was L4, which included 90% (77) of the isolates. Six transmission clusters were identified; the most frequent was TC6, which included 13 isolates with a L4.1.1 and a predominantly multidrug-resistant condition. Conclusions The results illustrate the utility of WGS for establishing the potential for prediction of resistance against first and second line drugs in isolates of tuberculosis from the region. They also demonstrate the feasibility of this procedure for use as a tool to support the epidemiological surveillance of drug- and multidrug-resistant tuberculosis.
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Affiliation(s)
- Carlos Francisco Madrazo-Moya
- Instituto de Salud Pública, Universidad Veracruzana, Veracruz, México
- Programa de Maestría en Ciencias de la Salud, Instituto de Ciencias de la Salud, Universidad Veracruzana, Veracruz, México
| | | | - Betzaida Cuevas-Córdoba
- Laboratorio de Farmacogenómica, Instituto Nacional de Medicina Genómica, Ciudad de México, México
| | | | - Martín Barbosa-Amezcua
- Laboratorio de Farmacogenómica, Instituto Nacional de Medicina Genómica, Ciudad de México, México
| | - Xavier Soberón
- Laboratorio de Farmacogenómica, Instituto Nacional de Medicina Genómica, Ciudad de México, México
| | - Raquel Muñiz-Salazar
- Laboratorio de Epidemiología y Ecología y Molecular, Escuela de Ciencias de la Salud, Universidad Autónoma de Baja California, Ensenada, Baja California, México
| | - Armando Martínez-Guarneros
- Laboratorio de Micobacterias, Instituto Nacional de Diagnóstico y Referencia Epidemiológica, Ciudad de México, México
| | - Claudia Bäcker
- Laboratorio de Micobacterias, Instituto Nacional de Diagnóstico y Referencia Epidemiológica, Ciudad de México, México
| | - José Zarrabal-Meza
- Laboratorio Estatal de Salud Pública, Secretaria de Salud, Veracruz, México
| | | | | | - Michael Lauzardo
- Division of Infectious Diseases and Global Medicine, College of Medicine, University of Florida, Gainesville, Florida, United States of America
| | - Iñaki Comas
- Biomedicine Institute of Valencia IBV-CSIC, Valencia, Spain
- CIBER of Epidemiology and Public Health, Madrid, Spain
| | - Roberto Zenteno-Cuevas
- Instituto de Salud Pública, Universidad Veracruzana, Veracruz, México
- Programa de Maestría en Ciencias de la Salud, Instituto de Ciencias de la Salud, Universidad Veracruzana, Veracruz, México
- * E-mail:
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Zille AI, Werneck GL, Luiz RR, Conde MB. Social determinants of pulmonary tuberculosis in Brazil: an ecological study. BMC Pulm Med 2019; 19:87. [PMID: 31068155 PMCID: PMC6507035 DOI: 10.1186/s12890-019-0855-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2018] [Accepted: 04/26/2019] [Indexed: 11/10/2022] Open
Abstract
Background Social determinants may influence the incidence and control of tuberculosis (TB). The aim of this study was to evaluate the correlation between social determinants and pulmonary TB (PTB) incidence and treatment outcomes in different regions in Brazil. Methods In this ecological study, PTB incidence and treatment outcome rates as well as HIV incidence for all 5560 Brazilian cities as reported to the Brazilian Tuberculosis Program in 2010 were correlated with two social indicators, the Human Development Index (HDI) and Gini Index (GI). Cities were stratified into six groups based on location (metropolitan region or not) and size (small, medium, and large cities), and according to the regions of the country to which they belong. The Spearman correlation coefficient was used to assess the association between variables. Results In 2010, 68,729 new PTB cases were reported in Brazil, with an incidence rate of 36 cases per 100,000 inhabitants. Incidence rates and PTB mortality demonstrated a weak negative correlation with HDI and a positive correlation with GI. The correlation between HDI and GI with cure, relapse, and lost to follow-up of treatment greatly varied in the different groups of cities and regions of the country evaluated. Conclusions There is a weak correlation between HDI and GI and PTB incidence and mortality rate. However, there is great variation between the HDI and GI and cure, relapse, and lost to follow-up in the different groups of cities and regions of the country. This suggests that for TB determination, these outcome variables might be more related to the quality of healthcare provided by services than to social determinants in the general population.
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Affiliation(s)
- Alessandra Isabel Zille
- Instituto de Doenças do Tórax da Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil. .,Hospital Universitário Clementino Fraga Filho, Cidade Universitária, Rua, Professor Rodolpho Paulo Rocco n° 255, 6° andar, Rio de Janeiro, 21941-913, Brazil.
| | - Guilherme Loureiro Werneck
- Instituto de Estudos em Saúde Coletiva da Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil
| | - Ronir Raggio Luiz
- Instituto de Estudos em Saúde Coletiva da Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil
| | - Marcus Barreto Conde
- Instituto de Doenças do Tórax da Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil.,Faculdade de Medicina de Petropolis/FASE, Petrópolis, RJ, Brazil
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de Freitas Quintero MC, Figueiredo Vendramini SH, Sperli Geraldes Santos MDL, Rocha Dos Santos M, Gazetta CE, Garcia Lourenção L, Sperli Geraldes Soler ZA, da Cruz Oliveira SA, Geraldes Marin Dos Santos Sasaki NS, Zanon Ponce MA, Domingues Wysocki A, Scatena LM, Scatena Villa TC. [Access to diagnosis of tuberculosis in Brazilian medium-sized municipality]. ACTA ACUST UNITED AC 2019; 20:103-109. [PMID: 30183892 DOI: 10.15446/rsap.v20n1.64177] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2017] [Accepted: 10/07/2017] [Indexed: 11/09/2022]
Abstract
OBJETIVO Evaluating access to tuberculosis diagnosis, from the perspective of patients. METHODS Cross-sectional study with 108 tuberculosis patients. Data were collected using the brazilian instrument Primary Care Assessment Tool - PCAT-Brazil, adapted for attention to tuberculosis, including socio-economic and demographic indicators, location of diagnosis and diagnostic access tuberculosis. The analysis of the data was of frequency, average, standard deviation, confidence interval and Chi-square test. RESULTS Most cases were diagnosed in hospitals (52.8%). The patient sought the Health Unit on average three times until receiving medical care. The indicators of difficulty of displacement, expenditure on motorized transport and consultation within 24 hours to discover the disease were not satisfactory and regular. The chi-square test showed a statistical association between diagnosis location and seeking the nearest health unit from home. CONCLUSIONS There are weaknesses in the early diagnosis of tuberculosis in primary care. There are many challenges to be faced to strengthen this level of health care, with organizational capacity to overcome the shortcomings related to the patient and the service that make it difficult to access the diagnosis of the disease.
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Affiliation(s)
- Maria Celeste de Freitas Quintero
- MQ: Enf. M. Sc. Ciências da Saúde, Secretaria Municipal de Saúde de São José do Rio Preto. São José do Rio Preto. São Paulo, Brasil.
| | | | | | - Marilene Rocha Dos Santos
- MR: Enf. Doutora em Ciências da Saúde. Faculdade de Medicina de São José do Rio Preto. São José do Rio Preto. SP, Brasil.
| | - Claudia Eli Gazetta
- CG: Enf. Doutora em Enfermagem. Faculdade de Medicina de São José do Rio Preto. São José do Rio Preto. SP, Brasil.
| | - Luciano Garcia Lourenção
- LL: Enf. Doutor em Ciências da Saúde. Escola de Enfermagem, Universidade Federal do Rio Grande. Rio Grande. Rio Grande do Sul, Brasil.
| | | | - Sonia Aparecida da Cruz Oliveira
- SO: Enf. Mestre em Enfermagem em Saúde Pública. Faculdade de Medicina de São José do Rio Preto. São José do Rio Preto. SP, Brasil.
| | | | - Maria Amélia Zanon Ponce
- MP: Enf. Doutora em Enfermagem em Saúde Pública, Secretaria Municipal de Saúde de São José do Rio Preto. São José do Rio Preto. São Paulo, Brasil.
| | - Anneliese Domingues Wysocki
- AW: Enf. Doutora em Ciências. Universidade Federal do Mato Grosso do Sul, Três Lagoas. Mato Grosso do Sul, Brasil.
| | - Lucia Marina Scatena
- LS: Eng. Produção Química, Doutora em Engenharia de Produção Hidráulica e Saneamento. Universidade Federal do Triângulo Mineiro. Uberaba. Minas Gerais, Brasil.
| | - Tereza Cristina Scatena Villa
- TV: Enf. Livre-docente. Escola de Enfermagem de Ribeirão Preto, Universidade de São Paulo. Ribeirão Preto. São Paulo, Brasil.
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Cranmer LM, Langat A, Ronen K, McGrath CJ, LaCourse S, Pintye J, Odeny B, Singa B, Katana A, Nganga L, Kinuthia J, John-Stewart G. Integrating tuberculosis screening in Kenyan Prevention of Mother-To-Child Transmission programs. Int J Tuberc Lung Dis 2018; 21:256-262. [PMID: 28225335 DOI: 10.5588/ijtld.16.0478] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Tuberculosis (TB) screening in Prevention of Mother-To-Child Transmission (PMTCT) programs is important to improve TB detection, prevention and treatment. METHODS As part of a national PMTCT program evaluation, mother-infant pairs attending 6-week and 9-month immunization visits were enrolled at 141 maternal and child health clinics throughout Kenya. Clinics were selected using population-proportion-to-size sampling with oversampling in a high human immunodeficiency virus (HIV) prevalence region. The World Health Organization (WHO) TB symptom screen was administered to HIV-infected mothers, and associations with infant cofactors were determined. RESULTS Among 498 HIV-infected mothers, 165 (33%) had a positive TB symptom screen. Positive maternal TB symptom screen was associated with prior TB (P = 0.04). Women with a positive TB symptom screen were more likely to have an infant with HIV infection (P = 0.02) and non-specific TB symptoms, including cough (P = 0.003), fever (P = 0.05), and difficulty breathing (P = 0.01). TB exposure was reported by 11% of the women, and 15% of the TB-exposed women received isoniazid preventive therapy. CONCLUSIONS Postpartum HIV-infected mothers frequently had a positive TB symptom screen. Mothers with a positive TB symptom screen were more likely to have infants with HIV or non-specific TB symptoms. Integration of maternal TB screening and prevention into PMTCT programs may improve maternal and infant outcomes.
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Affiliation(s)
- L M Cranmer
- Emory University School of Medicine and Children's Hospital of Atlanta, Atlanta, Georgia, USA
| | - A Langat
- Centers for Disease Control and Prevention, Nairobi, Kenya
| | - K Ronen
- University of Washington, Seattle, Washington
| | - C J McGrath
- University of Texas Medical Branch, Galveston, Texas, USA
| | - S LaCourse
- University of Washington, Seattle, Washington
| | - J Pintye
- University of Washington, Seattle, Washington
| | - B Odeny
- University of Washington, Seattle, Washington
| | - B Singa
- Kenya Medical Research Institute, Nairobi
| | - A Katana
- Centers for Disease Control and Prevention, Nairobi, Kenya
| | - L Nganga
- Centers for Disease Control and Prevention, Nairobi, Kenya
| | - J Kinuthia
- Kenyatta National Hospital, Nairobi, Kenya
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Amoakwa K, Martinson NA, Moulton LH, Barnes GL, Msandiwa R, Chaisson RE. Risk factors for developing active tuberculosis after the treatment of latent tuberculosis in adults infected with human immunodeficiency virus. Open Forum Infect Dis 2015; 2:ofu120. [PMID: 26034751 PMCID: PMC4438881 DOI: 10.1093/ofid/ofu120] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2014] [Accepted: 12/16/2014] [Indexed: 11/12/2022] Open
Abstract
Tuberculosis is the leading cause of death among adults infected with human immunodeficiency virus (HIV), and rates of tuberculosis remain high even after preventive therapy. Among 908 HIV-infected adults in a trial of preventive treatment, we found self-reported alcohol consumption, low baseline CD4 count, high baseline viral load, and tuberculin skin test size >15 mm as independent risk factors for incident tuberculosis.
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Affiliation(s)
- Kojo Amoakwa
- Johns Hopkins University Bloomberg School of Public Health , Baltimore, Maryland
| | - Neil A Martinson
- Perinatal HIV Research Unit , University of Witwatersrand , Johannesburg , South Africa ; Johns Hopkins University Center for Tuberculosis Research , Baltimore, Maryland
| | - Lawrence H Moulton
- Johns Hopkins University Bloomberg School of Public Health , Baltimore, Maryland
| | - Grace L Barnes
- Johns Hopkins University Center for Tuberculosis Research , Baltimore, Maryland
| | - Reginah Msandiwa
- Perinatal HIV Research Unit , University of Witwatersrand , Johannesburg , South Africa
| | - Richard E Chaisson
- Johns Hopkins University Bloomberg School of Public Health , Baltimore, Maryland ; Johns Hopkins University Center for Tuberculosis Research , Baltimore, Maryland
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Santos Neto M, Silva FLD, Sousa KRD, Yamamura M, Popolin MP, Arcêncio RA. Clinical and epidemiological profile and prevalence of tuberculosis/HIV co-infection in a regional health district in the state of Maranhão, Brazil. J Bras Pneumol 2013; 38:724-32. [PMID: 23288117 DOI: 10.1590/s1806-37132012000600007] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2012] [Accepted: 08/31/2012] [Indexed: 11/22/2022] Open
Abstract
OBJECTIVE To describe the clinical and epidemiological profile, as well as the prevalence, of tuberculosis/HIV co-infection in the Regional Health District of Tocantins, which serves 14 cities in the state of Maranhão, Brazil. METHODS This was a descriptive epidemiological study based on secondary data obtained from individual tuberculosis reporting forms in the Brazilian Case Registry Database. We included all reported cases of tuberculosis/HIV co-infection, by city, between January of 2001 and December of 2010. RESULTS In the district, 1,746 cases of tuberculosis were reported. Of those tested for HIV, 100 had positive results, which corresponded to a tuberculosis/HIV co-infection prevalence of 39%. Of the co-infected patients, 79% were male, 42% were Mulatto, and 64% were in the 20- to 40-year age bracket, 31% had had < 4 years of schooling, and 88% resided in the city of Imperatriz. Cases of pulmonary tuberculosis and new cases of tuberculosis predominated (in 87% and 73%, respectively). Of the co-infected patients, 27% had positive sputum smear microscopy results, and 89% had chest X-ray findings suggestive of tuberculosis. Sputum culture was performed in only 7% of the cases. CONCLUSIONS Our results show that, because of its clinical and epidemiological profile, tuberculosis/HIV co-infection is still a major public health problem in the southwestern region of Maranhão. This situation calls for better coordination between tuberculosis and sexually transmitted disease/AIDS control programs, as well as a political commitment and greater involvement on the part of administrators and health care professionals in the planning of interventions and the functioning of health care facilities.
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Affiliation(s)
- Marcelino Santos Neto
- Escola de Enfermagem de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto, SP, Brasil.
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Lemos LDA, Feijão AR, Gir E, Galvão MTG. Quality of life aspects of patients with HIV/tuberculosis co-infection. ACTA PAUL ENFERM 2012. [DOI: 10.1590/s0103-21002012000800007] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
AIM: To investigate the quality of life of patients with HIV and tuberculosis co-infection and grasping the changes imposed in order to live with both transmissible diseases simultaneously. METHODS: Qualitative-quantitative research, undertaken at a specialized outpatient clinic in Fortaleza, Brazil, between 2009 and 2010, involving 34 co-infected patients. For data collection, a quality of life scale called HAT-QoL was used, which consists of 42 items, as well as open questions to perceive the changes the disease causes. RESULTS: Most participants suffered from pulmonary tuberculosis, were male and their education level was low. Quality of life was impaired in those domains related to economic, sexual and secrecy issues. It was also evidenced that the co-infection imposes changes in daily life that underline and further harm quality of life. CONCLUSION: Experiencing co-infection, despite appropriate treatment, causes changes in the patients' lives, whose repercussions can be mitigated through health-promoting interventions.
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