Karyotype characterization, constitutive heterochromatin and nucleolus organizer regions of Paranaita opima (Coleoptera, Chrysomelidae, Alticinae)

Catalog of the Chrysomelinae (Coleoptera: Chrysomelidae) deposited in the entomological collections of the Instituto Nacional de Pesquisas da Amaznia (INPA) and the Universidade Federal do Amazonas (UFAM), Manaus, Brazil, with an illustrated key for the genera occurring in Brazil (except Aeneolucentia, Jermaniella, and Pandona)

This paper presents a species catalog of leaf beetles of the subfamily Chrysomelinae (Coleoptera: Chrysomelidae) deposited in two important Brazilian institutions in the state of Amazonas (Instituto Nacional de Pesquisas da Amaznia and Universidade Federal do Amazonas), providing their respective type localities, geographic distributions, as well as illustrations for all listed species (including pictures of the types of Platyphora imperialis (Stl, 1858), Platyphora excellens (Stl, 1859), Platyphora sanguinipennis (Jacoby, 1895), and Platyphora olivenca (Bechyn, 1954)), and new locality records, predators, parasites, parasitoids, and host plant for some species. In addition, we provide the first illustrated key for the genera occurring in Brazil (except Aeneolucentia, Jermaniella, and Pandona).

Giant Sex Chromosomes in Omophoita Species (Coleoptera, Chrysomelidae): Structural and Evolutionary Relationships Revealed by Zoo-FISH and Comparative Genomic Hybridization (CGH)

The beetles of the subtribe Oedionychina (Chrysomelidae, Alticinae) are the only ones that have the atypical giant and achiasmatic sex chromosomes, which are substantially larger than the autosomes. Previous cytogenetic analyses suggest a large accumulation of repetitive DNA in the sex chromosomes. In this study, we examined the similarity of X and Y chromosomes in four Omophoita species and compared genomic differentiation to better understand the evolutionary process and the giant sex chromosomes origin. Intraspecific genomic comparation using male and female genomes of O. octoguttata and interespecific analyses using genomic DNA of O. octoguttata, O. sexnotata, O. magniguttis, and O. personata were performed. In addition, whole chromosome painting (WCP) experiments were performed with X and Y chromosome probes of O. octogutatta. CGH analysis revealed great genomic similarity between the sexes and a sex-specific region on the Y chromosome, and interspecific analysis revealed a genomic divergence between species. In contrast, WCP results revealed that the sex chromosomes of O. octoguttata have high intra- and interspecific similarity with the studied species. Our data support a common origin under the canonical evolution of the sex chromosomes in this group, as they have high genomic similarity between them.

Karyotype analysis of four jewel-beetle species (Coleoptera, Buprestidae) detected by standard staining, C-banding, AgNOR-banding and CMA3/DAPI staining

The male karyotypes of Acmaeodera pilosellae persica Mannerheim, 1837 with 2n=20 (18+neoXY), Sphenoptera scovitzii Faldermann, 1835 (2n=38-46), Dicerca aenea validiuscula Semenov, 1895 - 2n=20 (18+Xyp) and Sphaerobothris aghababiani Volkovitsh et Kalashian, 1998 - 2n=16 (14+Xyp) were studied using conventional staining and different chromosome banding techniques: C-banding, AgNOR-banding, as well as fluorochrome Chromomycin A3 (CMA3) and DAPI. It is shown that C-positive segments are weakly visible in all four species which indicates a small amount of constitutive heterochromatin (CH). There were no signals after DAPI staining and some positive signals were discovered using CMA3 staining demonstrating absence of AT-rich DNA and presence of GC-rich clusters of CH. Nucleolus organizing regions (NORs) were revealed using Ag-NOR technique; argentophilic material mostly coincides with positive signals obtained using CMA3 staining.

A second-generation anchored genetic linkage map of the tammar wallaby (Macropus eugenii)

Background

The tammar wallaby, Macropus eugenii, a small kangaroo used for decades for studies of reproduction and metabolism, is the model Australian marsupial for genome sequencing and genetic investigations. The production of a more comprehensive cytogenetically-anchored genetic linkage map will significantly contribute to the deciphering of the tammar wallaby genome. It has great value as a resource to identify novel genes and for comparative studies, and is vital for the ongoing genome sequence assembly and gene ordering in this species.

Results

A second-generation anchored tammar wallaby genetic linkage map has been constructed based on a total of 148 loci. The linkage map contains the original 64 loci included in the first-generation map, plus an additional 84 microsatellite loci that were chosen specifically to increase coverage and assist with the anchoring and orientation of linkage groups to chromosomes. These additional loci were derived from (a) sequenced BAC clones that had been previously mapped to tammar wallaby chromosomes by fluorescence in situ hybridization (FISH), (b) End sequence from BACs subsequently FISH-mapped to tammar wallaby chromosomes, and (c) tammar wallaby genes orthologous to opossum genes predicted to fill gaps in the tammar wallaby linkage map as well as three X-linked markers from a published study. Based on these 148 loci, eight linkage groups were formed. These linkage groups were assigned (via FISH-mapped markers) to all seven autosomes and the X chromosome. The sex-pooled map size is 1402.4 cM, which is estimated to provide 82.6% total coverage of the genome, with an average interval distance of 10.9 cM between adjacent markers. The overall ratio of female/male map length is 0.84, which is comparable to the ratio of 0.78 obtained for the first-generation map.

Conclusions

Construction of this second-generation genetic linkage map is a significant step towards complete coverage of the tammar wallaby genome and considerably extends that of the first-generation map. It will be a valuable resource for ongoing tammar wallaby genetic research and assembling the genome sequence. The sex-pooled map is available online at http://compldb.angis.org.au/.

Physical mapping of 18S rDNA cistron in species of the Omophoita genus (Coleoptera, Alticinae) using fluorescent in situ hybridization

Alticinae has the greatest amount of biodiversity among the Chrysomelidae, with 40,000 described species, only 290 of which have been analyzed cytogenetically. The majority of studies refer to conventional staining and few species have been analyzed or have responded to differential staining methods. The aim of the present study was to describe an 18S rDNA probe for Alticinae and the location of this cluster in species of the Omophoita genus. The fragment of approximately 750bp obtained through a PCR (Polymerase Chain Reaction) amplification reaction with specific oligonucleotides to 18S rDNA was cloned and denominated pTZ_Ooct_18Sp and then submitted to automatic sequencing. The alignment of the sequences obtained through the sequencing of the clones generated a consensus sequence of 722bp for Omophoita octoguttata with 98% homology with other species of Alticinae. The analysis of mitotic cells of O. octoguttata and Omophoita magniguttis submitted to fluorescent in situ hybridization (FISH) with the 18S rDNA probe revealed that the ribosomal genes are located in 6th pair. O. magniguttis also has a second labeled pair. Omophoita personata exhibited nucleolar organizer regions associated to one autosome pair. The analysis of meiotic cells submitted to FISH revealed one labeled bivalent in metaphase I in O. octoguttata and O. personata and in one chromosome in metaphase II in O. octoguttata. FISH data suggest a conserved pattern in the species analyzed and an apomorphy of O. magniguttis karyotype. The rDNA 18S probe could be considered an important marker to evidence the karyotypic differentiation, not observed with conventional methodologies, in species considered karyotypically conserved and uniform.

Cytogenetic characterization of Eurysternus caribaeus (Coleoptera: Scarabaeidae): evidence of sex-autosome fusion and diploid number reduction prior to species dispersion

Mitotic and meiotic chromosomes of several populations of Eurysternus caribaeus (Coleoptera: Scarabaeidae) were analysed through conventional staining, C-banding, base-specific fluorochromes, silver nitrate staining and fluorescent in situ hybridization (FISH). All specimens showed 2n = 8 in their karyotypes, with a neo-XY sex system (Y is a submetacentric and X a metacentric) and three pairs of submetacentric autosomes. The analysis of constitutive heterochromatin (CH) revealed small blocks located in the centromeric region of all chromosomes which do not present positive staining under the fluorochromes CMA3 and DAPI. Silver nitrate staining revealed that the nucleolar organizer region (NORs) is associated with the sex chromosomes. The FISH technique revealed that rDNA sites in the X and Y are different in size. Data from different populations indicate that the diploid number reduction (2n = 8) observed in E. caribaeus is established and presumably has preceded the dispersion of this species. Moreover, this reduction occasioned the translocation of rDNA sites to the sex chromosomes, X and Y, an uncommon pattern in Scarabaeidae that was observed for the first time by the FISH in this work.