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de Oliveira Sant'Anna L, Dos Santos LS, Olivella JGB, da Cruz Mota M, Ramos JN, Baio PVP, da Rocha DJPG, Vieira VV, Almuzara M, Vay C, Barberis C, Castro TLDP, Seyffert N, Pacheco LGC, Mattos-Guaraldi AL. Description of Corynebacterium hiratae sp. nov. isolated from a human tissue bone a novel member of Corynebacterium Genus. Braz J Microbiol 2024; 55:1405-1414. [PMID: 38598149 PMCID: PMC11153448 DOI: 10.1007/s42770-024-01331-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2023] [Accepted: 04/02/2024] [Indexed: 04/11/2024] Open
Abstract
BACKGROUND Corynebacterium spp. are widely disseminated in the environment, and they are part of the skin and mucosal microbiota of animals and humans. Reports of human infections by Corynebacterium spp. have increased considerably in recent years and the appearance of multidrug resistant isolates around the world has drawn attention. OBJECTIVES To describe a new species of Corynebacterium from human tissue bone is described after being misidentified using available methods. METHODS For taxonomic analyses, phylogenetic analysis of 16S rRNA and rpoB genes, in silico DNA-DNA hybridization, average nucleotide and amino acid identity, multilocus sequence analysis, and phylogenetic analysis based on the complete genome were used. FINDINGS Genomic taxonomic analyzes revealed values of in silico DNA-DNA hybridization, average nucleotide and amino acids identity below the values necessary for species characterization between the analyzed isolates and the closest phylogenetic relative Corynebacterium aurimucosum DSM 44532T. MAIN CONCLUSIONS Genomic taxonomic analyzes indicate that the isolates analyzed comprise a new species of the Corynebacterium genus, which we propose to name Corynebacterium hiratae sp. nov. with isolate 332T (= CBAS 826T = CCBH 35,014T) as the type strain.
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Affiliation(s)
- Lincoln de Oliveira Sant'Anna
- Laboratory of Diphtheria and Corynebacteria of Clinical Relevance, Department of Microbiology, Immunology and Parasitology, State University of Rio de Janeiro, Vinte e Oito de Setembro 87, Fundos, 3º andar. Vila Isabel, Rio de Janeiro, RJ, CEP:20551-030, Brazil.
| | - Louisy Sanches Dos Santos
- Laboratory of Diphtheria and Corynebacteria of Clinical Relevance, Department of Microbiology, Immunology and Parasitology, State University of Rio de Janeiro, Vinte e Oito de Setembro 87, Fundos, 3º andar. Vila Isabel, Rio de Janeiro, RJ, CEP:20551-030, Brazil
| | - Julianna Giordano Botelho Olivella
- Laboratory of Diphtheria and Corynebacteria of Clinical Relevance, Department of Microbiology, Immunology and Parasitology, State University of Rio de Janeiro, Vinte e Oito de Setembro 87, Fundos, 3º andar. Vila Isabel, Rio de Janeiro, RJ, CEP:20551-030, Brazil
| | - Mariana da Cruz Mota
- Laboratory of Diphtheria and Corynebacteria of Clinical Relevance, Department of Microbiology, Immunology and Parasitology, State University of Rio de Janeiro, Vinte e Oito de Setembro 87, Fundos, 3º andar. Vila Isabel, Rio de Janeiro, RJ, CEP:20551-030, Brazil
| | - Juliana Nunes Ramos
- Laboratory of Diphtheria and Corynebacteria of Clinical Relevance, Department of Microbiology, Immunology and Parasitology, State University of Rio de Janeiro, Vinte e Oito de Setembro 87, Fundos, 3º andar. Vila Isabel, Rio de Janeiro, RJ, CEP:20551-030, Brazil
| | | | | | - Verônica Viana Vieira
- Faculty of Pharmacy and Biochemistry and Bacteriology, Department of Clinical Biochemistry, University of Buenos Aires, Autonomous City of Buenos Aires, Argentina
| | - Marisa Almuzara
- Interdisciplinary Laboratory of Medical Research, Oswaldo Cruz Institute, Oswaldo Cruz Foundation, Rio de Janeiro, Brazil
| | - Carlos Vay
- Interdisciplinary Laboratory of Medical Research, Oswaldo Cruz Institute, Oswaldo Cruz Foundation, Rio de Janeiro, Brazil
| | - Claudia Barberis
- Interdisciplinary Laboratory of Medical Research, Oswaldo Cruz Institute, Oswaldo Cruz Foundation, Rio de Janeiro, Brazil
| | | | - Núbia Seyffert
- Institute of Health Sciences, Department of Biotechnology, Federal University of Bahia, Salvador, Brazil
| | | | - Ana Luíza Mattos-Guaraldi
- Laboratory of Diphtheria and Corynebacteria of Clinical Relevance, Department of Microbiology, Immunology and Parasitology, State University of Rio de Janeiro, Vinte e Oito de Setembro 87, Fundos, 3º andar. Vila Isabel, Rio de Janeiro, RJ, CEP:20551-030, Brazil
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Mangutov EO, Alieva AA, Kharseeva GG, Voronina NA, Alekseeva LP, Evdokimova VV, Yakusheva OA, Popivnenko MD. Corynebacterium spp.: relationship of pathogenic properties and antimicrobial resistance. Klin Lab Diagn 2022; 67:519-524. [PMID: 36099461 DOI: 10.51620/0869-2084-2022-67-9-519-524] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Corynebacterium spp. are part of the human microbiome, but can cause the development of inflammatory diseases of various localization. Purpose - to evaluate the relationship between pathogenic properties and resistance to antimicrobial drugs (AMD) of Corynebacterium spp. from patients with inflammatory diseases of the respiratory tract. Strains of Corynebacterium spp. isolated from patients with inflammatory diseases of the respiratory tract (99 pcs.) and practically healthy individuals (33 pcs.). Isolates were identified by mass spectrometric method (MALDI-ToFMS), their adhesive and invasive activity on Hep-2 cells, cytopathic effect (CPE) in CHO-K1 cell culture, and resistance to antimicrobial drugs (AMD) were determined. Indicators of adhesion (3.65±0.679(CFU±m)x102/ml), invasion (1.72±0.230 (CFU±m)x102/ml), cytotoxicity (69.1±3.8% of dead CHO-K1 cells ) Corynebasterium spp. strains isolated from patients are higher (p≤0.05) than similar indicators in practically healthy people. 90.9% of isolates from patients had resistance to AMD, in most cases (57.6±4.9%) resistance to only one AMP was noted, less often to two (25.2±4.3%), three or more (8.08±2.7%). According to the results of correlation-regression analysis, pathogenic properties (adhesiveness, invasiveness, cytotoxicity) of Corynebacterium spp. strains isolated from patients are in close direct relationship with resistance to AMD. This indicates the importance of identifying strains of non-diphtheria corynebacteria resistant to AMDs, which, under the influence of developing resistance to AMDs, can increase their pathogenic potential, moving from commensalism to parasitism.
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Affiliation(s)
- E O Mangutov
- Federal State Educational Institution of Higher Education «Rostov State Medical University» Ministry of Health of Russia
| | - A A Alieva
- Federal State Educational Institution of Higher Education «Rostov State Medical University» Ministry of Health of Russia
| | - Galina Georgievna Kharseeva
- Federal State Educational Institution of Higher Education «Rostov State Medical University» Ministry of Health of Russia
| | - N A Voronina
- Federal State Educational Institution of Higher Education «Rostov State Medical University» Ministry of Health of Russia
| | | | | | | | - M D Popivnenko
- Federal State Educational Institution of Higher Education «Rostov State Medical University» Ministry of Health of Russia
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Barberis CM, Traglia GM, Almuzara MN, Rocha DJPG, Santos CS, Aguiar ERGR, Pacheco LGC, Vay CA. Corynebacterium phoceense - a rare Corynebacterium species isolated from a urine sample. Access Microbiol 2021; 3:000197. [PMID: 34151147 PMCID: PMC8209636 DOI: 10.1099/acmi.0.000197] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2020] [Accepted: 12/16/2020] [Indexed: 11/18/2022] Open
Abstract
Corynebacterium spp. are Gram-positive rods that are recognized to cause opportunistic diseases under certain predisposing clinical conditions. Some species have been described in urinary tract infections. In this report we document a new episode of urinary tract infection caused by Corynebacterium phoceense and describe the whole-genome sequencing, phenotypic characteristics and mass spectra obtained by matrix-assisted desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS). Based on genome identification and DNA-to-DNA hybridization, we can assume that our strain is the second isolate of C. phoceense to be described in a urine sample. No other infectious diseases have been reported to be associated with this species.
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Affiliation(s)
- Claudia M. Barberis
- Universidad de Buenos Aires, Facultad de Farmacia y Bioquímica, Departamento de Bioquímica Clínica, Hospital de Clínicas José de San Martín, Ciudad Autónoma de Buenos Aires, Argentina
- *Correspondence: Claudia M. Barberis,
| | - Germán M. Traglia
- Universidad de Buenos Aires, Facultad de Farmacia y Bioquímica, Departamento de Bioquímica Clínica, Hospital de Clínicas José de San Martín, Ciudad Autónoma de Buenos Aires, Argentina
| | - Marisa N. Almuzara
- Universidad de Buenos Aires, Facultad de Farmacia y Bioquímica, Departamento de Bioquímica Clínica, Hospital de Clínicas José de San Martín, Ciudad Autónoma de Buenos Aires, Argentina
| | | | - Carolina S. Santos
- Instituto de Ciencias da Saúde, Universidade Federal da Bahia, Salvador-BA, Brasil
| | - Eric R. G. R. Aguiar
- Instituto de Ciencias da Saúde, Universidade Federal da Bahia, Salvador-BA, Brasil
| | - Luis G. C. Pacheco
- Instituto de Ciencias da Saúde, Universidade Federal da Bahia, Salvador-BA, Brasil
| | - Carlos A. Vay
- Universidad de Buenos Aires, Facultad de Farmacia y Bioquímica, Departamento de Bioquímica Clínica, Hospital de Clínicas José de San Martín, Ciudad Autónoma de Buenos Aires, Argentina
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Pichon M, Micaelo M, Longuet P, Plantefève G, Abderrahmane M, Wifaq B, Menn AM. A rare case of Corynebacterium riegelii urosepsis: Role of the MALDI-TOF mass spectrometry in the identification of emerging pathogens. Med Mal Infect 2019; 49:474-477. [PMID: 31257065 DOI: 10.1016/j.medmal.2019.06.005] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2018] [Accepted: 06/11/2019] [Indexed: 11/30/2022]
Affiliation(s)
- M Pichon
- Service de médecine polyvalente, centre hospitalier Victor-Dupouy, 69, rue du Lieutenant-Colonel-Prudhon, 95100 Argenteuil, France.
| | - M Micaelo
- Laboratoire de bactériologie, centre hospitalier Victor-Dupouy, 69, rue du Lieutenant- Colonel-Prudhon, 95100 Argenteuil, France
| | - P Longuet
- Equipe mobile d'antibiothérapie, centre hospitalier Victor-Dupouy, 69, rue du Lieutenant-Colonel-Prudhon, 95100 Argenteuil, France; Service de réanimation polyvalente, centre hospitalier Victor-Dupouy, 69, rue du Lieutenant-Colonel-Prudhon, 95100 Argenteuil, France
| | - G Plantefève
- Service de réanimation polyvalente, centre hospitalier Victor-Dupouy, 69, rue du Lieutenant-Colonel-Prudhon, 95100 Argenteuil, France
| | - M Abderrahmane
- Service de médecine polyvalente, centre hospitalier Victor-Dupouy, 69, rue du Lieutenant-Colonel-Prudhon, 95100 Argenteuil, France
| | - B Wifaq
- Service de médecine polyvalente, centre hospitalier Victor-Dupouy, 69, rue du Lieutenant-Colonel-Prudhon, 95100 Argenteuil, France
| | - A-M Menn
- Service de médecine polyvalente, centre hospitalier Victor-Dupouy, 69, rue du Lieutenant-Colonel-Prudhon, 95100 Argenteuil, France
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