Prevalence and histopathology of Neoechinorhynchus curemai Noronha, 1973 (Acanthocephala: Neoechinorhynchidae) in Prochilodus lineatus Valenciennes, 1836 from Volta Grande Reservoir, MG, Brazil

Identification of antiparasitic drug targets using a multi-omics workflow in the acanthocephalan model

Background

With the expansion of animal production, parasitic helminths are gaining increasing economic importance. However, application of several established deworming agents can harm treated hosts and environment due to their low specificity. Furthermore, the number of parasite strains showing resistance is growing, while hardly any new anthelminthics are being developed. Here, we present a bioinformatics workflow designed to reduce the time and cost in the development of new strategies against parasites. The workflow includes quantitative transcriptomics and proteomics, 3D structure modeling, binding site prediction, and virtual ligand screening. Its use is demonstrated for Acanthocephala (thorny-headed worms) which are an emerging pest in fish aquaculture. We included three acanthocephalans (Pomphorhynchus laevis, Neoechinorhynchus agilis, Neoechinorhynchus buttnerae) from four fish species (common barbel, European eel, thinlip mullet, tambaqui).

Results

The workflow led to eleven highly specific candidate targets in acanthocephalans. The candidate targets showed constant and elevated transcript abundances across definitive and accidental hosts, suggestive of constitutive expression and functional importance. Hence, the impairment of the corresponding proteins should enable specific and effective killing of acanthocephalans. Candidate targets were also highly abundant in the acanthocephalan body wall, through which these gutless parasites take up nutrients. Thus, the candidate targets are likely to be accessible to compounds that are orally administered to fish. Virtual ligand screening led to ten compounds, of which five appeared to be especially promising according to ADMET, GHS, and RO5 criteria: tadalafil, pranazepide, piketoprofen, heliomycin, and the nematicide derquantel.

Conclusions

The combination of genomics, transcriptomics, and proteomics led to a broadly applicable procedure for the cost- and time-saving identification of candidate target proteins in parasites. The ligands predicted to bind can now be further evaluated for their suitability in the control of acanthocephalans. The workflow has been deposited at the Galaxy workflow server under the URL tinyurl.com/yx72rda7.

Supplementary Information

The online version contains supplementary material available at 10.1186/s12864-022-08882-1.

Host-dependent impairment of parasite development and reproduction in the acanthocephalan model

BACKGROUND

A central question in parasitology is why parasites mature and reproduce in some host species but not in others. Yet, a better understanding of the inability of parasites to complete their life cycles in less suitable hosts may hold clues for their control. To shed light on the molecular basis of parasite (non-)maturation, we analyzed transcriptomes of thorny-headed worms (Acanthocephala: Pomphorhynchus laevis), and compared developmentally arrested worms excised from European eel (Anguilla anguilla) to developmentally unrestricted worms from barbel (Barbus barbus).

RESULTS

Based on 20 RNA-Seq datasets, we demonstrate that transcriptomic profiles are more similar between P. laevis males and females from eel than between their counterparts from barbel. Impairment of sexual phenotype development was reflected in gene ontology enrichment analyses of genes having differential transcript abundances. Genes having reproduction- and energy-related annotations were found to be affected by parasitizing either eel or barbel. According to this, the molecular machinery of male and female acanthocephalans from the eel is less tailored to reproduction and more to coping with the less suitable environment provided by this host. The pattern was reversed in their counterparts from the definitive host, barbel.

CONCLUSIONS

Comparative analysis of transcriptomes of developmentally arrested and reproducing parasites elucidates the challenges parasites encounter in hosts which are unsuitable for maturation and reproduction. By studying a gonochoric species, we were also able to highlight sex-specific traits. In fact, transcriptomic evidence for energy shortage in female acanthocephalans associates with their larger body size. Thus, energy metabolism and glycolysis should be promising targets for the treatment of acanthocephaliasis. Although inherently enabling a higher resolution in heterosexuals, the comparison of parasites from definitive hosts and less suitable hosts, in which the parasites merely survive, should be applicable to hermaphroditic helminths. This may open new perspectives in the control of other helminth pathogens of humans and livestock.

First report of acanthocephalan parasite, Longicollum pagrosomi Yamaguti, 1935 in cultured red snapper (Lutjanus erythropterus) in Taiwan

For the first time, Longicollum pagrosomi Yamaguti, 1935, an acanthocephalan parasite, has been characterized with morphological, histopathological and molecular detail in farmed red snapper (Lutjanus erythropterus) in Taiwan. The diseased fish showed clinical signs of anorexia, emaciation and were gasping for air at the water's surface. Gross examination revealed extensive necrosis in the intestine and even penetration at the site of parasitic attachment, resulting in a large number of parasites being lodged in the peritoneal cavity, surrounded by black hyperplastic connective tissue. The parasites collected from the intestine were studied using optical microscopy, histopathology, scanning electron microscopy (SEM) and molecular phylogenetic analysis. They were creamy white in colour, and were separated into their proboscis, neck and metasoma (trunk) under optical microscopy. Histopathological examination revealed ovarian balls (floating ovaries) inside the ligament sac and eggs within the egg sorting apparatus. The SEM images revealed that the proboscis had 11-14 longitudinal rows with 9-12 recurrent, backward-facing, organized hooks. In the 18S and 28S phylogenetic tree, sequences of the specimens were identical to those of other Longicollum pagrosomi, in addition to the morphological features. Thus, we confirmed that the parasites belonged to Longicollum pagrosomi in this study.

Temporal effects and changes in the parasitic community of Prochilodus lineatus (Valenciennes, 1837) (Characiformes: Prochilodontidae) in a floodplain

The construction of dams causes several impacts on aquatic environments, altering the flow of rivers, environmental variables, and all biota present, including parasites. Little is known about how the parasitic community can be influenced in the long term by environmental changes. In this study, it was expected that the impacts caused by environmental disturbances will be directly reflected by the composition of the parasite populations. We evaluated the change in the structure of the Prochilodus lineatus endoparasite community between two periods sampled 15 years apart in the upper Paraná River floodplain. There was a significant difference in the weight-length relationship of P. lineatus between these periods and a total of 15 species of parasites were found: 11 species in Period 1 and nine species in Period 2 and five species occurred in both periods. The species richness and diversity were higher in Period 1, and we observed that the correlation of descriptors (richness, diversity and evenness) increased with fish length in this period. In both periods, digeneans numerically dominated the parasitic community, and we verified changes in the composition of parasites between periods. Both the host and the parasites were possibly affected by the environmental impacts resulting from the construction of dams over time, and it is noteworthy that complex life cycle parasites such as Digenea and Acanthocephala require intermediate hosts to complete their life cycle, and the population responds to fluctuations in the face of modified environments.

The genome, transcriptome, and proteome of the fish parasite Pomphorhynchus laevis (Acanthocephala)

Thorny-headed worms (Acanthocephala) are endoparasites exploiting Mandibulata (Arthropoda) and Gnathostomata (Vertebrata). Despite their world-wide occurrence and economic relevance as a pest, genome and transcriptome assemblies have not been published before. However, such data might hold clues for a sustainable control of acanthocephalans in animal production. For this reason, we present the first draft of an acanthocephalan nuclear genome, besides the mitochondrial one, using the fish parasite Pomphorhynchus laevis (Palaeacanthocephala) as a model. Additionally, we have assembled and annotated the transcriptome of this species and the proteins encoded. A hybrid assembly of long and short reads resulted in a near-complete P. laevis draft genome of ca. 260 Mb, comprising a large repetitive portion of ca. 63%. Numbers of transcripts and translated proteins (35,683) were within the range of other members of the Rotifera-Acanthocephala clade. Our data additionally demonstrate a significant reorganization of the acanthocephalan gene repertoire. Thus, more than 20% of the usually conserved metazoan genes were lacking in P. laevis. Ontology analysis of the retained genes revealed many connections to the incorporation of carotinoids. These are probably taken up via the surface together with lipids, thus accounting for the orange coloration of P. laevis. Furthermore, we found transcripts and protein sequences to be more derived in P. laevis than in rotifers from Monogononta and Bdelloidea. This was especially the case in genes involved in energy metabolism, which might reflect the acanthocephalan ability to use the scarce oxygen in the host intestine for respiration and simultaneously carry out fermentation. Increased plasticity of the gene repertoire through the integration of foreign DNA into the nuclear genome seems to be another underpinning factor of the evolutionary success of acanthocephalans. In any case, energy-related genes and their proteins may be considered as candidate targets for the acanthocephalan control.

Immune response of teleost fish to helminth parasite infection

Abstract Fish immune systems have become the subject of several studies due to the growing development of aquaculture and fisheries, and the demand for healthy produce for human consumption. Among the parasites responsible for diseases in fish farming, helminths stand out because they cause infections in farmed fish and decrease food conversion, zootechnical performance and meat quality. In the present review, the components that participate in the innate and adaptive immune responses of teleost fish that have so far been described are presented in order to summarize the defenses that these hosts have recourse to, in combating different groups of helminth parasites.

The digestive tube of Piaractus brachypomus: gross morphology, histology/histochemistry of the mucosal layer and the effects of parasitism by Neoechinorhynchus sp

The objective of the present study was to describe the histology and histochemistry of the mucosal layer of the digestive tube of Piaractus brachypomus, and the histopathology associated with parasitism by Neoechinorhynchus sp. The digestive tube of P. brachypomus consists of three macroscopically distinct portions: short, rectilinear and elastic-walled ooesophagus, J-shaped siphon stomach and a long intestine with rectilinear and curved portions, defined by patterns of villi as foregut, midgut, and hindgut. Histological and histochemical differences were observed in the mucosal layers of the different digestive tube regions, such as intense production of neutral and acidic mucous substances in the pseudostratified mucosal epithelium of the oesophagus; positive periodic acid Schiff reagent (PAS)reactions at the apex of the columnar epithelial cells of the stomach and increased intensity of histochemical reactions in the hindgut region. Neoechinorhynchus sp. was present in 85.7% of specimens examined, with a mean intensity of 7.4 ± 6.2 (±) and abundance of 6.33. Good health of the fish indicated by high relative condition factor values ( _Kn ) and occurrence of only mild to moderate alteration in the mucosal layer indicated that Neoechinorhynchus sp. exhibits low pathogenicity towards P. brachypomus hosts in farming environments, with low levels of infection.

Biodiversity of the metazoan parasites of Prochilodus lineatus (Valenciennes, 1837) (Characiformes: Prochilodontidae) in anthropized environments from the Batalha River, São Paulo State, Brazil

Abstract: Biodiversity of fish parasites is a field of significant growth worldwide, whether due to the advancement of fish farms or the important role of these organisms as indicators of environment quality and ecosystem health, making them useful tools in the conservation and maintenance of the biodiversity as a whole. The objectives of this study were to evaluate the structure and composition of the parasitic fauna of Prochilodus lineatus collected from two structurally distinct stretches of the Batalha River. Fifty specimens of P. lineatus were collected between June 2015 and June 2016. Of these 50 hosts, 875 parasite specimens were collected, divided into 30 species, belonging to seven groups: Myxozoa, Monogenea, Digenea, Acanthocephala, Nematoda, Copepoda and Hirudinea. In addition to new records of known parasites of P. lineatus for this locality, 13 species were newly recorded parasitizing this fish, including a new monogenean species (Tereancistrum sp. n.), with Monogenea being the most representative class in the study. The findings of this study expands the known geographic distribution of these parasite species and helps to increase the knowledge of the biodiversity of these organisms in different hosts and environments. In general, the structure and composition of the P. lineatus parasitic fauna did not seem to be influenced by the structural characteristics of the two stretches studied, due to the migratory habits of the host.

Morphometric and molecular characterisation of Tenuiproboscis keralensis n. sp. infecting marine and brackish water fishes from the south-west coast of India with a note on morphological plasticity

A new species of acanthocephalan infecting marine and brackish water fishes from the south-west coast of India is described. The parasite belongs to the genus Tenuiproboscis, and the fish hosts include Lutjanus argentimaculatus, L. ehrenbergii, Siganus javus, Epinephelus malabaricus, E. coioides, Scatophagus argus, Parascolopsis aspinosa, Caranx ignobilis, Gerres filamentosus and Lates calcarifer. The parasite inhabits mid- and hindgut regions and is characterised by an elongated, cylindrical, bulbous and posteriorly tapering metasoma and a claviform proboscis having 14-15 rows of 14-15 hooks each. Females larger than males, measured 3898.16-10,318.00 μm (6430.00 ± 1417.30) in length and 458.93-1435.68 μm (929.81 ± 250.39) in width. Males measured 3234.89-8644.20 μm (5729.50 ± 1176.60) in length and 388.30-1584.61 μm (795.88 ± 184.12) in width. Parasites recovered from different host species showed morphological/morphometric variations. However, principal component analysis (PCA) revealed significant overlapping of characters indicating their similarities. Proboscis profiling based on variations in size and position of hooks also yielded similar results. Further, in molecular phylogenetic analysis, parasites from different fish hosts formed a monophyletic clade with strong bootstrap support, again indicating their conspecific nature. These morphological/morphometric variations can be ascribed to differences in host species. Morphology and morphometrics in combination with PCA, proboscis profiling and molecular analysis suggest the present acanthocephalan parasite is different from other described species of Tenuiproboscis. Hence, it is considered as a new species and named T. keralensis n. sp. Prevalence, intensity and abundance of the parasite in different hosts are also discussed.

Histopathologic aspects in Plagioscion squamosissimus (HECKEL, 1940) induced by Neoechinorhynchus veropesoi, metacestodes and anisakidae juveniles

Plagioscion squamosissimus (Heckel 1840), a fish endemic to the Amazon Basin and commonly known as the “silver croaker”, plays an important role in the ecology and economy of Pará State, Brazil. Knowledge of host-parasite relationships is important to understanding the role of parasites in the control of natural host populations. This work describes histopathological aspects caused by several common intestinal parasites found during a helminthological survey of fish in northern Brazil. We observed a high prevalence of helminth infection, especially by J3 nematode juveniles of the family Anisakidae and metacestodes of the family Protocephalidae (both with 100% prevalence). An external capsule surrounded each juvenile with numerous juveniles inside sac-like structures formed of connective tissue. Inflammation was observed to be caused by infection of metacestodes, reaching the intestinal muscularis mucosa. Neoechinorhynchus veropesoi (38% prevalence) was found in the small intestine of P. squamosissimus, invading the mucosa, submucosa, and internal muscularis of the intestine causing intense inflammation. Histopathology of host-parasite relationships in fish has been rare, and the pathology of parasites in P. squamosissimus is described herein.

Haematological response of curimbas Prochilodus lineatus, naturally infected with Neoechinorhynchus curemai

This study evaluated the haematological response of curimbas Prochilodus lineatus, naturally infected with Neoechinorhynchus curemai (Acanthocephala: Neoechinorhynchidae). Thirty-seven fish were captured in October 2010 from the Mogi Guaçu River, Porto Ferreira, SP, Brazil. Infected fish presented increased mean corpuscular volume of erythrocytes, and lower thrombocyte and higher monocyte counts than uninfected fish.

The impact of a dam on the helminth fauna and health of a neotropical fish species Salminus brasiliensis (Cuvier 1816) from the upper Paraná River, Brazil

The aim of the present study was to detect changes in the structure of the helminth parasite infracommunities in Salminus brasiliensis (Cuvier 1816) from the floodplain of the upper Paraná River after construction of the Porto Primavera Hydroelectric Plant. A total of 126 fish in the period before the dam's construction and 56 specimens 10 years after this event were analysed. Three species of parasites were collected before the construction of the dam: Prosthenhystera obesa Diesing, 1850 (Digenea), Cladocystis intestinalis Vaz, 1932 (Digenea) and Monticellia coryphicephala Monticelli, 1892 (Cestoda), and one nematode species in the larval stage, whose identification was not possible. After dam construction, the following helminth parasites were found: C. intestinalis, M. coryphicephala, Octospiniferoides incognita, Contracaecum spp. larvae and Contracaecum sp. type 2 larvae Moravec, Kohn & Fernandes 1993. The diversity of helminth parasites measured by the Brillouin diversity index (HB) differed significantly between the pre- and post-dam periods (mean HB = 0.069 and HB = 0.2, respectively; P= 0.0479; Mann-Whitney U test). The parasite community of S. brasiliensis before the construction of the dam showed concentration of dominance (C) of P. obesa (C = 0.38), while there was no concentration of dominance of any species of parasite (C = 0.22) after the dam's construction. Before the Porto Primavera dam the relative condition factor of fish was 1.0; after the dam's construction it was 0.93 (P < 0.0001; Mann-Whitney U test). This study records the disappearance of the species P. obesa and suggests that there has been local extinction of this parasite. The results show that the anthropic influence on natural systems is interfering with the welfare and health of S. brasiliensis, reflected by its fauna of helminth parasites.

Parasite diversity in Oxydoras niger (Osteichthyes: Doradidae) from the basin of Solimões River, Amazonas state, Brazil, and the relationship between monogenoidean and condition factor

This study describes the parasitic fauna of Oxydoras niger from the Coari Lake, tributary of the medium Solimões River, State of Amazonas, Brazil, and the relationship between the number of Monogenoidea and the condition factor. From a total of 27 examined fish, 70.3% were parasitised by at least one parasite species as follows: Ichthyophthirius multifiliis (Protozoa), Chilodonella sp. (Protozoa), Cosmetocleithrum gussevi, C. confusus, C. parvum and Cosmetocleithrum sp. (Monogenoidea), Paracavisona impudica (Acanthocephala), Cucullanus grandistomis (Nematoda), Proteocephalus kuyukuyu (Cestoda) and Dadaytrema sp. (Digenea). Monogenoidea helminthes were the most prevalent parasite when compared to protozoan and intestinal helminthes. This study showed that O. niger has a great parasite diversity composed mainly of monogenoideans followed by acanthocephalan and digenean. This is the first record of Dadaytrema in O. niger from the Brazilian Amazon. There was a positive correlation between the number of monogenoideans and the condition factor (Kn) of fish, and with this mean intensity of infection, fish welfare was not affected.

J, Onaka EM, Bozzo FR, Fujimoto RY, Moraes FR. Characterization of the acute inflammatory response in the hybrid tambacu (Piaractus mesopotamicus male × Colossoma macropomum female) (Osteichthyes)

This work evaluated the acute inflammatory response induced by injections of 0.5 mL saline solution (control), 500 µg carrageenin and 0.5 mL thioglycollate 3% in the swim bladder of juvenile tambacu hybrid. Fish were distributed in three treatments, three replications and acclimated for a period of 10 days before assay. The cell characterization from the inflammatory exudate was performed in Giemsa and PAS stained smears. Carrageenin, injected in fish, showed an increase on the total number of cells in the inflammatory exudate when compared to saline and thioglycollate injected. Whereas, for carrageenin-injected fish, the percentage of thrombocyte was higher than thioglycollate. On the other hand, granulocyte percentage in thioglycollate-injected fish was higher than the ones injected using carrageenin. Carrageenin provoked the highest migration of macrophage to the inflammatory site. The PAS method confirmed the presence of three types of granulocytes: eosinophilic granular cell (EGC) type 1 with the characteristics of a special granulocytic cell commonly found in the circulating blood; EGC type 2 shorter than the last one and neutrophil. This study contributes to a better understanding of the inflammatory response and infectious processes in native fish.

Metazoários parasitos de seis espécies de peixes do Reservatório de Lajes, Estado do Rio de Janeiro, Brasil

Entre abril de 2002 e julho de 2003, foram necropsiados 231 espécimes de peixes: 39 Astyanax bimaculatus (Linnaeus, 1758), 79 A. fasciatus (Cuvier, 1819), 23 Hypostomus affinis (Steindachner, 1877), 26 Hoplias malabaricus (Bloch, 1794), 30 Loricariichthys castaneus (Castelnau, 1855) e 34 Trachelyopterus striatulus (Steindachner, 1876) provenientes do Reservatório de Lajes (22º42' - 22º50'S, 43º53' 44º05'O), Estado do Rio de Janeiro, Brasil, para estudo das suas comunidades parasitárias. A maioria dos espécimes de H. affinis (95,6%) e H. malabaricus (84,6%) estavam parasitados por pelo menos uma espécie de metazoário. Em A. bimaculatus, A. fasciatus, L. castaneus e T. striatulus 41%, 39,2%, 56,7% e 14,7% dos espécimes estavam parasitados, respectivamente. Foram coletadas oito diferentes espécies de metazoários parasitos: 2 em A. bimaculatus, 3 em A. fasciatus, 3 em H. affinis, 4 em H. malabaricus, 4 em L. castaneus e 1 em T. striatulus. As comunidades de metazoários parasitos das seis espécies de peixes estudadas apresentaram típico padrão de distribuição agregada. Foram observados dois casos de correlação negativa entre a abundância e a prevalência parasitárias e o comprimento total dos hospedeiros. A comunidade parasitária de L. castaneus apresentou os maiores valores de intensidade média, índice de dispersão e diversidade. As comunidades parasitárias dos peixes estudados apresentaram escassez de correlação entre a abundância, riqueza parasitária e diversidade com o comprimento total dos hospedeiros. Os baixos valores de riqueza e diversidade das comuni-dades parasitárias podem ser atribuídos as características oligotróficas do Reservatório de Lajes.

Neoechinorhynchus curemai (Acanthocephala: Neoechinorhynchidae) in Prochilodus lineatus (Osteichthyes: Prochilodontidae) from the Paraná River, Brazil

This work evaluated parasitic infections by Neoechinorhynchus curemai (Acanthocephala: Neoechinorhynchidae) in Prochilodus lineatus captured between August 2000 and August 2001 in the Paraná River, Presidente Epitácio, São Paulo, Brazil. Of 87 fishes examined, 59 were infected (25 males and 34 females). High mean intensities occurred in August 2000 (45.2, range 2-204), September 2000 (28.5, range 11-73), October 2000 (59.3, range 2-250) and February 2001 (27.3, range 3-73). There was no relationship of rainfall with mean intensity and prevalence. Males were more parasitized (P<0.05) than females. This work contributes to the knowledge of helminth parasites of fish from a little studied region of the Paraná River, showing diversity in their fauna when compared to other places in the same river.