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Wang W, Javed T, Shen L, Sun T, Yang B, Zhang S. Establishment of an Efficient Sugarcane Transformation System via Herbicide-Resistant CP4-EPSPS Gene Selection. PLANTS (BASEL, SWITZERLAND) 2024; 13:852. [PMID: 38592870 PMCID: PMC10975096 DOI: 10.3390/plants13060852] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/16/2024] [Revised: 03/06/2024] [Accepted: 03/11/2024] [Indexed: 04/11/2024]
Abstract
Sugarcane (Saccharum spp.), a major cash crop that is an important source of sugar and bioethanol, is strongly influenced by the impacts of biotic and abiotic stresses. The intricate polyploid and aneuploid genome of sugarcane has shown various limits for conventional breeding strategies. Nonetheless, biotechnological engineering currently offers the best chance of introducing commercially significant agronomic features. In this study, an efficient Agrobacterium-mediated transformation system that uses the herbicide-resistant CP4-EPSPS gene as a selection marker was developed. Notably, all of the plants that were identified by PCR as transformants showed significant herbicide resistance. Additionally, this transformation protocol also highlighted: (i) the high yield of transgenic lines from calli (each gram of calli generated six transgenic lines); (ii) improved selection; and (iii) a higher transformation efficiency. This protocol provides a reliable tool for a routine procedure for the generation of resilient sugarcane plants.
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Affiliation(s)
- Wenzhi Wang
- National Key Laboratory for Tropical Crop Breeding, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China; (W.W.); (T.J.); (L.S.); (T.S.); (B.Y.)
- Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya 571763, China
- Crop Genomics and Bioinformatics Center and National Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing 210095, China
- Hainan Yazhou Bay Seed Laboratory, Sanya 571763, China
| | - Talha Javed
- National Key Laboratory for Tropical Crop Breeding, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China; (W.W.); (T.J.); (L.S.); (T.S.); (B.Y.)
- Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya 571763, China
| | - Linbo Shen
- National Key Laboratory for Tropical Crop Breeding, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China; (W.W.); (T.J.); (L.S.); (T.S.); (B.Y.)
- Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya 571763, China
| | - Tingting Sun
- National Key Laboratory for Tropical Crop Breeding, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China; (W.W.); (T.J.); (L.S.); (T.S.); (B.Y.)
- Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya 571763, China
| | - Benpeng Yang
- National Key Laboratory for Tropical Crop Breeding, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China; (W.W.); (T.J.); (L.S.); (T.S.); (B.Y.)
- Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya 571763, China
| | - Shuzhen Zhang
- National Key Laboratory for Tropical Crop Breeding, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China; (W.W.); (T.J.); (L.S.); (T.S.); (B.Y.)
- Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya 571763, China
- Hainan Yazhou Bay Seed Laboratory, Sanya 571763, China
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Zarka KA, Jagd LM, Douches DS. T-DNA characterization of genetically modified 3-R-gene late blight-resistant potato events with a novel procedure utilizing the Samplix Xdrop ® enrichment technology. FRONTIERS IN PLANT SCIENCE 2024; 15:1330429. [PMID: 38419775 PMCID: PMC10900525 DOI: 10.3389/fpls.2024.1330429] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/30/2023] [Accepted: 01/22/2024] [Indexed: 03/02/2024]
Abstract
Before the commercialization of genetically modified crops, the events carrying the novel DNA must be thoroughly evaluated for agronomic, nutritional, and molecular characteristics. Over the years, polymerase chain reaction-based methods, Southern blot, and short-read sequencing techniques have been utilized for collecting molecular characterization data. Multiple genomic applications are necessary to determine the insert location, flanking sequence analysis, characterization of the inserted DNA, and determination of any interruption of native genes. These techniques are time-consuming and labor-intensive, making it difficult to characterize multiple events. Current advances in sequencing technologies are enabling whole-genomic sequencing of modified crops to obtain full molecular characterization. However, in polyploids, such as the tetraploid potato, it is a challenge to obtain whole-genomic sequencing coverage that meets the regulatory approval of the genetic modification. Here we describe an alternative to labor-intensive applications with a novel procedure using Samplix Xdrop® enrichment technology and next-generation Nanopore sequencing technology to more efficiently characterize the T-DNA insertions of four genetically modified potato events developed by the Feed the Future Global Biotech Potato Partnership: DIA_MSU_UB015, DIA_MSU_UB255, GRA_MSU_UG234, and GRA_MSU_UG265 (derived from regionally important varieties Diamant and Granola). Using the Xdrop® /Nanopore technique, we obtained a very high sequence read coverage within the T-DNA and junction regions. In three of the four events, we were able to use the data to confirm single T-DNA insertions, identify insert locations, identify flanking sequences, and characterize the inserted T-DNA. We further used the characterization data to identify native gene interruption and confirm the stability of the T-DNA across clonal cycles. These results demonstrate the functionality of using the Xdrop® /Nanopore technique for T-DNA characterization. This research will contribute to meeting regulatory safety and regulatory approval requirements for commercialization with small shareholder farmers in target countries within our partnership.
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Affiliation(s)
- Kelly A. Zarka
- Department of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, MI, United States
| | | | - David S. Douches
- Department of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, MI, United States
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Liu F, Liu Y, Zou J, Zhang L, Zheng H, Luo Y, Wang X, Wang L. Molecular Characterization and Efficacy Evaluation of Transgenic Maize Harboring cry2Ab- vip3A- cp4epsps for Insect Resistance and Herbicide Tolerance. PLANTS (BASEL, SWITZERLAND) 2023; 12:612. [PMID: 36771697 PMCID: PMC9919038 DOI: 10.3390/plants12030612] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/08/2022] [Revised: 01/18/2023] [Accepted: 01/23/2023] [Indexed: 06/18/2023]
Abstract
Insect infestation and weed interference have a seriously negative impact on the growth, yield, and grain quality of maize. In this study, transgenic maize plants harboring three exogenous genes, cry2Ab, vip3A, and cp4epsps, that were constructed into a single T-DNA were developed for protection against insects and weeds. The transgene integration sites on the chromosomes in two transgenic maize events, CVC-1 and CVC-2, were determined using whole genome sequencing and specific PCR detection. As revealed by laboratory insect bioassays, these two transgenic events exhibited strong insecticidal toxicity against three major species of Lepidoptera insects, including Mythimna separata, Helicoverpa armigera, and Spodoptera frugiperda, with mortality rates exceeding 96%, 100%, and 100%, respectively, after six days of infestation. In addition, CVC-1 exhibited a high tolerance to glyphosate under field conditions. The successful expressions of cry2Ab, vip3A, and cp4epsps in various tissues at different developmental stages of CVC-1 were validated at the transcriptional and translational levels using quantitative real-time reverse transcription PCR (qRT-PCR) and enzyme-linked immunosorbent assay (ELISA), respectively. These findings demonstrated that the transgenic maize CVC-1 developed using this triple gene construct has excellent insect resistance and herbicide tolerance, which may provide a valuable germplasm resource and data support for future maize breeding of insect and weed control.
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Affiliation(s)
- Fantao Liu
- Key Laboratory of Molecular Cytogenetics and Genetic Breeding of Heilongjiang Province, Harbin Normal University, Harbin 150025, China
| | - Yuan Liu
- CAAS/Key Laboratory of Agricultural Genomics (Beijing), Biotechnology Research Institute, Ministry of Agriculture, Beijing 100081, China
| | - Junjie Zou
- CAAS/Key Laboratory of Agricultural Genomics (Beijing), Biotechnology Research Institute, Ministry of Agriculture, Beijing 100081, China
| | - Lan Zhang
- CAAS/Key Laboratory of Agricultural Genomics (Beijing), Biotechnology Research Institute, Ministry of Agriculture, Beijing 100081, China
| | - Hongyan Zheng
- CAAS/Key Laboratory of Agricultural Genomics (Beijing), Biotechnology Research Institute, Ministry of Agriculture, Beijing 100081, China
| | - Yanzhong Luo
- CAAS/Key Laboratory of Agricultural Genomics (Beijing), Biotechnology Research Institute, Ministry of Agriculture, Beijing 100081, China
| | - Xiaoping Wang
- Key Laboratory of Molecular Cytogenetics and Genetic Breeding of Heilongjiang Province, Harbin Normal University, Harbin 150025, China
| | - Lei Wang
- CAAS/Key Laboratory of Agricultural Genomics (Beijing), Biotechnology Research Institute, Ministry of Agriculture, Beijing 100081, China
- National Nanfan Research Institute (Sanya), Sanya 572022, China
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Zhang H, Li R, Guo Y, Zhang Y, Zhang D, Yang L. LIFE-Seq: a universal Large Integrated DNA Fragment Enrichment Sequencing strategy for deciphering the transgene integration of genetically modified organisms. PLANT BIOTECHNOLOGY JOURNAL 2022; 20:964-976. [PMID: 34990051 PMCID: PMC9055813 DOI: 10.1111/pbi.13776] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/18/2021] [Revised: 12/18/2021] [Accepted: 12/30/2021] [Indexed: 06/14/2023]
Abstract
Molecular characterization of genetically modified organisms (GMOs) yields basic information on exogenous DNA integration, including integration sites, entire inserted sequences and structures, flanking sequences and copy number, providing key data for biosafety assessment. However, there are few effective methods for deciphering transgene integration, especially for large DNA fragment integration with complex rearrangement, inversion and tandem repeats. Herein, we developed a universal Large Integrated DNA Fragments Enrichment strategy combined with PacBio Sequencing (LIFE-Seq) for deciphering transgene integration in GMOs. Universal tilling DNA probes targeting transgenic elements and exogenous genes facilitate specific enrichment of large inserted DNA fragments associated with transgenes from plant genomes, followed by PacBio sequencing. LIFE-Seq were evaluated using six GM events and four crop species. Target DNA fragments averaging ~6275 bp were enriched and sequenced, generating ~26 352 high fidelity reads for each sample. Transgene integration structures were determined with high repeatability and sensitivity. Compared with next-generation whole-genome sequencing, LIFE-Seq achieved better data integrity and accuracy, greater universality and lower cost, especially for transgenic crops with complex inserted DNA structures. LIFE-Seq could be applied in molecular characterization of transgenic crops and animals, and complex DNA structure analysis in genetics research.
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Affiliation(s)
- Hanwen Zhang
- National Center for the Molecular Characterization of Genetically Modified OrganismsJoint International Research Laboratory of Metabolic and Developmental SciencesSchool of Life Sciences and BiotechnologyShanghai Jiao Tong UniversityShanghaiChina
| | - Rong Li
- National Center for the Molecular Characterization of Genetically Modified OrganismsJoint International Research Laboratory of Metabolic and Developmental SciencesSchool of Life Sciences and BiotechnologyShanghai Jiao Tong UniversityShanghaiChina
| | - Yongkun Guo
- National Center for the Molecular Characterization of Genetically Modified OrganismsJoint International Research Laboratory of Metabolic and Developmental SciencesSchool of Life Sciences and BiotechnologyShanghai Jiao Tong UniversityShanghaiChina
| | - Yuchen Zhang
- National Center for the Molecular Characterization of Genetically Modified OrganismsJoint International Research Laboratory of Metabolic and Developmental SciencesSchool of Life Sciences and BiotechnologyShanghai Jiao Tong UniversityShanghaiChina
| | - Dabing Zhang
- National Center for the Molecular Characterization of Genetically Modified OrganismsJoint International Research Laboratory of Metabolic and Developmental SciencesSchool of Life Sciences and BiotechnologyShanghai Jiao Tong UniversityShanghaiChina
| | - Litao Yang
- National Center for the Molecular Characterization of Genetically Modified OrganismsJoint International Research Laboratory of Metabolic and Developmental SciencesSchool of Life Sciences and BiotechnologyShanghai Jiao Tong UniversityShanghaiChina
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Abstract
Plant breeding is both the science and art of developing elite crop cultivars by creating and reassembling desirable inherited traits for human benefit. From the bulk selection of wild plants for cultivation during early civilization to Mendelian genetics and genomics-assisted breeding in modern society, breeding methodologies have evolved over the last thousand years. In the past few decades, the "Green Revolution" through breeding of semi-dwarf wheat and rice varieties, and the use of heterosis and transgenic crops have dramatically enhanced crop productivity and helped prevent widespread famine (Hickey et al., 2019). Integration of these technologies can significantly improve breeding efficiency in the development of super crop varieties (Li et al., 2018). For example, a hybrid cotton variety CCRI63 and six related hybrid varieties account for nearly 90% of cotton production in the Yangtze River Basin (Wan et al., 2017; Wang et al., 2018). These varieties have successfully combined high yield, good quality, and biotic stress tolerance through the integration of conventional breeding, hybrid and genetically modified organism (GMO) technologies (Lu et al., 2019; Ma et al., 2019; Song et al., 2019). Unfortunately, such technology integration is not practical for most staple food crops, including rice and wheat, because of social or technical restrictions. Furthermore, plant breeding is still labor-intensive and time-consuming, and conventional breeding remains the leading approach for the release of commercial crop varieties worldwide. This is especially true for breeding cultivars and hybrids with high yield, good quality, and resistance to biotic or abiotic stresses (Liu et al., 2015; Gu et al., 2016). New germplasm, knowledge, and breeding techniques are required to breed the next generation of crop varieties.
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Affiliation(s)
- Chengdao Li
- Western Barley Genetics Alliance, College of Science, Health, Engineering and Education, Murdoch University, Murdoch, WA 6150, Australia
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Xu C, Cheng J, Lin H, Lin C, Gao J, Shen Z. Characterization of transgenic rice expressing fusion protein Cry1Ab/Vip3A for insect resistance. Sci Rep 2018; 8:15788. [PMID: 30361672 PMCID: PMC6202352 DOI: 10.1038/s41598-018-34104-4] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2018] [Accepted: 09/13/2018] [Indexed: 01/16/2023] Open
Abstract
Management of resistance development of insect pests is of great importance for continued utilization of Bt crop. The high-dose/refuge and pyramid (gene stacking) strategy are commonly employed to delay the evolution of insect resistance. Due to the anticipated difficulty for deployment of mandatory refuge for transgenic crops in China, where the size of farmer is quite small, stacking of genes with different modes of action is a more feasible strategy. Here we report the development of transgenic rice expressing a fusion protein of Cry1Ab and Vip3A toxin. Analysis of trypsin proteolysis suggested that the fusion protein is equivalent to the combination of Cry1Ab and Vip3A protein. The transgenic plants expressing the fusion protein were found to be highly resistant to two major rice pests, Asiatic rice borer Chilo suppressalis (Lepidoptera: Crambidae) and rice leaf folder Cnaphalocrocis medinalis (Lepidoptera: Crambidae), while their agronomic performances showed no significant difference compared to the non-transgenic recipient rice. Therefore, the transgenic rice may be utilized for rice pest control in China.
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Affiliation(s)
- Chao Xu
- State Key Laboratory of Rice Biology, Institute of Insect Sciences, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China
| | - Jiahui Cheng
- State Key Laboratory of Rice Biology, Institute of Insect Sciences, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China
| | - Haiyan Lin
- State Key Laboratory of Rice Biology, Institute of Insect Sciences, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China
| | - Chaoyang Lin
- State Key Laboratory of Rice Biology, Institute of Insect Sciences, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China
| | - Jianhua Gao
- College of Life Science, Shanxi Agricultural University, Taigu, China
| | - Zhicheng Shen
- State Key Laboratory of Rice Biology, Institute of Insect Sciences, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China.
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