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Burbrink FT, Ruane S. Contemporary Philosophy and Methods for Studying Speciation and Delimiting Species. ICHTHYOLOGY & HERPETOLOGY 2021. [DOI: 10.1643/h2020073] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Affiliation(s)
- Frank T. Burbrink
- Department of Herpetology, American Museum of Natural History, Central Park West at 79th Street, New York, New York 10024; . Send reprint requests to this address
| | - Sara Ruane
- Earth and Environmental Sciences: Ecology and Evolution, Rutgers University–Newark, 195 University Avenue, Newark, New Jersey 07102
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Martin BT, Douglas MR, Chafin TK, Placyk JS, Birkhead RD, Phillips CA, Douglas ME. Contrasting signatures of introgression in North American box turtle (
Terrapene
spp.) contact zones. Mol Ecol 2020; 29:4186-4202. [DOI: 10.1111/mec.15622] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2019] [Revised: 08/19/2020] [Accepted: 08/24/2020] [Indexed: 12/14/2022]
Affiliation(s)
- Bradley T. Martin
- Department of Biological Sciences University of Arkansas Fayetteville AR USA
| | - Marlis R. Douglas
- Department of Biological Sciences University of Arkansas Fayetteville AR USA
| | - Tyler K. Chafin
- Department of Biological Sciences University of Arkansas Fayetteville AR USA
| | - John S. Placyk
- Department of Biology University of Texas Tyler TX USA
- Science Division Trinity Valley Community College Athens TX USA
| | | | - Christopher A. Phillips
- Illinois Natural History Survey Prairie Research Institute University of Illinois Champaign IL USA
| | - Michael E. Douglas
- Department of Biological Sciences University of Arkansas Fayetteville AR USA
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Chang CH, Dai WY, Chen TY, Lee AH, Hou HY, Liu SH, Jang-Liaw NH. DNA barcoding reveals CITES-listed species among Taiwanese government-seized chelonian specimens. Genome 2018; 61:615-624. [PMID: 29916730 DOI: 10.1139/gen-2017-0264] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Compared to traditional morphological identification, DNA barcoding-molecular identification based on sequencing of a segment of mitochondrial cytochrome c oxidase subunit I (COI)-provides a shortcut to authenticating chelonian identifications. Here, we selected 63 government-seized chelonian specimens deposited at Taipei Zoo for DNA barcoding analysis. DNA barcoding and subsequent phylogenetic analysis successfully authenticated 36 chelonian species, including five that are listed in CITES Appendix I. Approximately 90% (57/63) of the specimens were successfully authenticated by our molecular approach, but lack or error of BOLD reference sequences, biological processes such as hybridization, and uncertain species delimitation all reduced the accuracy of DNA barcoding. To increase the accuracy of DNA barcoding, Taipei Zoo will continue to enrich the BOLD database and also establish a genetic database, to include additional genetic markers, by using government-seized chelonian specimens. A fast and accurate method to authenticate seized samples could assist law enforcement agencies to prosecute criminals and restrict illegal exploitation of wild chelonian resources.
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Affiliation(s)
- Chia-Hao Chang
- a Department of Animal Biology, University of Illinois, 202 Shelford Vivarium, 606 East Healey St., Champaign, IL 61820, USA
| | - Wei-Yu Dai
- b Taipei Zoo, No. 30, Section 2, Xinguang Rd., Wenshan District, Taipei City 11656, Taiwan
| | - Ting-Yu Chen
- b Taipei Zoo, No. 30, Section 2, Xinguang Rd., Wenshan District, Taipei City 11656, Taiwan
| | - An-Hsin Lee
- b Taipei Zoo, No. 30, Section 2, Xinguang Rd., Wenshan District, Taipei City 11656, Taiwan
| | - Hsuan-Yi Hou
- b Taipei Zoo, No. 30, Section 2, Xinguang Rd., Wenshan District, Taipei City 11656, Taiwan
| | - Shih-Hui Liu
- c Biodiversity Research Center, Academia Sinica, 128 Academia Road, Section 2, Nankang, Taipei City 11529, Taiwan
| | - Nian-Hong Jang-Liaw
- b Taipei Zoo, No. 30, Section 2, Xinguang Rd., Wenshan District, Taipei City 11656, Taiwan
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Vamberger M, Stuckas H, Vargas-Ramírez M, Kehlmaier C, Ayaz D, Aloufi AA, Lymberakis P, Široký P, Fritz U. Unexpected hybridization patterns in Near Eastern terrapins (Mauremys caspica,M. rivulata) indicate ancient gene flow across the Fertile Crescent. ZOOL SCR 2016. [DOI: 10.1111/zsc.12227] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Affiliation(s)
- Melita Vamberger
- Museum of Zoology; Senckenberg Dresden; A. B. Meyer Building 01109 Dresden Germany
| | - Heiko Stuckas
- Museum of Zoology; Senckenberg Dresden; A. B. Meyer Building 01109 Dresden Germany
| | - Mario Vargas-Ramírez
- Museum of Zoology; Senckenberg Dresden; A. B. Meyer Building 01109 Dresden Germany
| | - Christian Kehlmaier
- Museum of Zoology; Senckenberg Dresden; A. B. Meyer Building 01109 Dresden Germany
| | - Dinçer Ayaz
- Faculty of Science; Biology Department; Zoology Section; Ege University; 35100 Bornova Izmir Turkey
| | | | - Petros Lymberakis
- Natural History Museum of Crete; University of Crete; Knossou Ave. 71409 Irakleio Crete Greece
| | - Pavel Široký
- Department of Biology and Wildlife Diseases; Faculty of Veterinary Hygiene and Ecology; University of Veterinary and Pharmaceutical Sciences; Palackého 1/3 612 42 Brno Czech Republic
| | - Uwe Fritz
- Museum of Zoology; Senckenberg Dresden; A. B. Meyer Building 01109 Dresden Germany
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Spinks PQ, Thomson RC, McCartney-Melstad E, Shaffer HB. Phylogeny and temporal diversification of the New World pond turtles (Emydidae). Mol Phylogenet Evol 2016; 103:85-97. [DOI: 10.1016/j.ympev.2016.07.007] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2015] [Revised: 06/03/2016] [Accepted: 07/07/2016] [Indexed: 11/16/2022]
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Hybridization betweenMauremys japonicaandMauremys reevesiiInferred by Nuclear and Mitochondrial DNA Analyses. J HERPETOL 2014. [DOI: 10.1670/11-320] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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