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Song S, Xiao B, Hu J, Lin H, Du Z, Xiang K, Pan D, Hou X, Yuan J, Lai X, Sheng G. Ancient Mitogenomes Reveal Stable Genetic Continuity of the Holocene Serows. Genes (Basel) 2023; 14:1187. [PMID: 37372367 DOI: 10.3390/genes14061187] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2023] [Revised: 05/24/2023] [Accepted: 05/26/2023] [Indexed: 06/29/2023] Open
Abstract
As one of the remaining species of Caprinae only found in Asia, serows (Capricornis) and their classification and conservation have received increasing attention in recent years. However, their evolutionary history and population dynamics are not yet clear. To shed light on these topics, we report the first near-complete ancient mitochondrial genomes from two serow sub-fossils (CADG839 and CADG946) dating to 8860 ± 30 years and 2450 ± 30 years, and incorporate the newly obtained mitogenomes into the dataset of living serows (18 complete mitochondrial genomes drawn from National Center for Biotechnology Information, NCBI) to investigate their relationships and evolution. Phylogenetic results support four clades of serows that can be further divided into five subclades, indicating higher genetic diversity than previously thought. Notably, our two ancient samples do not form a separate branch but belong to Capricornis sumatraensis clade A together with modern individuals, which suggests genetic continuity between ancient and modern serows. Furthermore, our results suggest that the maternal divergences of serows occurred at the beginning of the Pleistocene. Bayesian estimation indicates that the first divergence among all serows happened approximately 2.37 Ma (95% highest posterior density, HPD: 2.74-2.02 Ma) when Japanese serow (Capricornis crispus) appeared, while the last divergence occurred within the Sumatran serow (C. sumatraensis clade A and B) around 0.37-0.25 Ma. Additionally, we found the effective maternal population size of C. sumatraensis increased around 225-160 and 90-50 ka, then remained stable since 50 ka. Overall, our study provides new insights into serow phylogeny and evolutionary history.
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Affiliation(s)
- Shiwen Song
- School of Environmental Studies, China University of Geosciences, Wuhan 430078, China
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430078, China
| | - Bo Xiao
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430078, China
- School of Earth Science, China University of Geosciences, Wuhan 430074, China
| | - Jiaming Hu
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430078, China
- School of Earth Science, China University of Geosciences, Wuhan 430074, China
| | - Haifeng Lin
- School of Environmental Studies, China University of Geosciences, Wuhan 430078, China
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430078, China
| | - Zhicheng Du
- School of Environmental Studies, China University of Geosciences, Wuhan 430078, China
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430078, China
| | - Kunpeng Xiang
- Guizhou Institute of Geological Survey, Guiyang 550081, China
| | - Dong Pan
- Palaeontological Fossil Conservation Center, Qinggang County, Suihua 151600, China
| | - Xindong Hou
- School of Environmental Studies, China University of Geosciences, Wuhan 430078, China
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430078, China
| | - Junxia Yuan
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430078, China
- Faculty of Materials Science and Chemistry, China University of Geosciences, Wuhan 430078, China
| | - Xulong Lai
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430078, China
- School of Earth Science, China University of Geosciences, Wuhan 430074, China
| | - Guilian Sheng
- School of Environmental Studies, China University of Geosciences, Wuhan 430078, China
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430078, China
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Kihara Y, Makino Y, Yokoyama M, Chiba F, Tanaka A, Nakayama SMM, Hayama SI, Ishizuka M, Nolte KB, Iwase H. X-ray analytic microscopy with CT-guided sample extraction to analyze potential projectile fragments in a dead serow. Leg Med (Tokyo) 2023; 63:102257. [PMID: 37068342 DOI: 10.1016/j.legalmed.2023.102257] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2022] [Revised: 04/04/2023] [Accepted: 04/09/2023] [Indexed: 04/19/2023]
Abstract
In forensic pathology, it is important to detect and recover as evidence residual metal particles and projectiles when evaluating potential gunshot wounds. This process can be challenging when the bullets are fragmented. This report presents our experience using multiple modalities to analyze the wound of an illegally killed Japanese serow (Capricornis crispus) found in a mountainous region without its head and hind limbs. We performed postmortem computed tomography (PMCT) and necropsy that showed a distant-range gunshot wound of the neck likely created by a centerfire rifle. A postmortem cut through the neck and absent head precluded a complete evaluation. To determine the composition of the metal-like fragments in the neck, sampling and metal analysis were performed in two ways. Samples extracted from the exposed wound surface without CT guidance were analyzed directly using inductively coupled plasma mass spectrometry (ICP-MS). Samples from the bone, muscles, and cervical cord extracted under CT guidance were analyzed using x-ray analytic microscopy (XGT-9000, HORIBA, Kyoto, Japan). In wound surface samples, silicon and iron were detected as the main components on ICP-MS, suggesting that the materials were gravel. The samples taken under CT guidance and analyzed with XGT-9000 revealed that the high-density CT areas were mainly composed of lead. Combining CT-guided sample extraction and XGT-9000 can be useful for retrieving true projectile fragments and avoiding the confusion created by erroneously sampling non-projectile surface materials.
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Affiliation(s)
- Yuko Kihara
- Laboratory of Shelter Medicine, Faculty of Veterinary Science, Nippon Veterinary and Life Science University, 1-7-1 Kyonan-cho, Musashino-shi, Tokyo 180-8602, Japan; Department of Forensic Medicine, Graduate School of Medicine, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan.
| | - Yohsuke Makino
- Department of Forensic Medicine, Graduate School of Medicine, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan; Education and Research Center of Legal Medicine, Graduate School of Medicine, Chiba University, 1-8-1 Inohana, Chuo-ku, Chiba-shi, Chiba 260-8670, Japan
| | - Masaaki Yokoyama
- Analytical Technology Division, Horiba Techno Service Co, Ltd., 2-6 Awajicho, Kanda, Chiyoda-ku, Tokyo 101-0063, Japan
| | - Fumiko Chiba
- Department of Forensic Medicine, Graduate School of Medicine, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan; Education and Research Center of Legal Medicine, Graduate School of Medicine, Chiba University, 1-8-1 Inohana, Chuo-ku, Chiba-shi, Chiba 260-8670, Japan
| | - Aki Tanaka
- Laboratory of Shelter Medicine, Faculty of Veterinary Science, Nippon Veterinary and Life Science University, 1-7-1 Kyonan-cho, Musashino-shi, Tokyo 180-8602, Japan
| | - Shouta M M Nakayama
- Laboratory of Toxicology, Department of Environmental Veterinary Sciences, Faculty of Veterinary Medicine, Hokkaido University, Sapporo, Kita18, Nishi9, Kita-ku, Sapporo, Hokkaido 060-0818, Japan; School of Veterinary Medicine, The University of Zambia, P.O. Box 32379, Lusaka 10101, Zambia
| | - Shin-Ichi Hayama
- Laboratory of Shelter Medicine, Faculty of Veterinary Science, Nippon Veterinary and Life Science University, 1-7-1 Kyonan-cho, Musashino-shi, Tokyo 180-8602, Japan
| | - Mayumi Ishizuka
- Laboratory of Toxicology, Department of Environmental Veterinary Sciences, Faculty of Veterinary Medicine, Hokkaido University, Sapporo, Kita18, Nishi9, Kita-ku, Sapporo, Hokkaido 060-0818, Japan
| | - Kurt B Nolte
- Departments of Pathology and Radiology, University of New Mexico School of Medicine, Albuquerque, NM 87131, USA
| | - Hirotaro Iwase
- Department of Forensic Medicine, Graduate School of Medicine, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan; Education and Research Center of Legal Medicine, Graduate School of Medicine, Chiba University, 1-8-1 Inohana, Chuo-ku, Chiba-shi, Chiba 260-8670, Japan
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Hiruma M, Takada H, Washida A, Koike S. Dietary partitioning and competition between sika deer and Japanese serows in high elevation habitats. MAMMAL RES 2023. [DOI: 10.1007/s13364-023-00683-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/31/2023]
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Onouchi S, Yoshida T, Mori T, Saito S, Atoji Y. Morphological variations in the transverse foramen of the axis in Japanese serows (Capricornis crispus). Anat Histol Embryol 2022; 51:602-610. [PMID: 35818997 DOI: 10.1111/ahe.12833] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2022] [Revised: 06/07/2022] [Accepted: 06/23/2022] [Indexed: 11/30/2022]
Abstract
The presence of transverse foramina in the axes of Japanese serows, a special national natural treasure in Japan, has been reported to be unstable, but other variations are unknown. In this study, we analysed the shape, cross-sectional area, length, and volume of the transverse foramen in the axes of 19 specimens using gross anatomy and computed tomography (CT) scan. There were four types in the transverse foramen: type 1, having the transverse foramina; type 2, having two cranial openings; type 3, sifting a caudal opening to the ventral side of the transverse process; and type 4, having no transverse foramina. Although the transverse foramina showed different types on the left and right sides in several specimens, there were no statistically significant differences in the length and volume. This variation may be related to running patterns of the vertebral artery penetrating the transverse foramina. Two goats without the transverse foramina were examined to infer a running pattern of the vertebral artery instead of Japanese serows. The vertebral artery in the goats branched in two directions (spinal and muscle), between the axis and the third cervical vertebra. This passage of the goat vertebral artery might be presumed in type 4 of Japanese serows. This study reveals the instability of the transverse foramina in the axes of Japanese serows and provides new data to compare the axes of other ruminants.
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Affiliation(s)
- Sawa Onouchi
- Laboratory of Veterinary Anatomy, Faculty of Applied Biological Sciences, Gifu University, Gifu, Japan.,Laboratory of Veterinary Anatomy, The Joint Graduate School of Veterinary Sciences, Gifu University, Gifu, Japan
| | - Tomoki Yoshida
- Laboratory of Veterinary Anatomy, Faculty of Applied Biological Sciences, Gifu University, Gifu, Japan
| | - Takashi Mori
- Laboratory of Veterinary Clinical Oncology, The Joint Graduate School of Veterinary Sciences, Gifu University, Gifu, Japan
| | - Shouichiro Saito
- Laboratory of Veterinary Anatomy, Faculty of Applied Biological Sciences, Gifu University, Gifu, Japan.,Laboratory of Veterinary Anatomy, The Joint Graduate School of Veterinary Sciences, Gifu University, Gifu, Japan
| | - Yasuro Atoji
- Laboratory of Veterinary Anatomy, Faculty of Applied Biological Sciences, Gifu University, Gifu, Japan
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Diet compositions of two sympatric ungulates, the Japanese serow (Capricornis crispus) and the sika deer (Cervus nippon), in a montane forest and an alpine grassland of Mt. Asama, central Japan. Mamm Biol 2021. [DOI: 10.1007/s42991-021-00122-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Mori E, Nerva L, Lovari S. Reclassification of the serows and gorals: the end of a neverending story? Mamm Rev 2019. [DOI: 10.1111/mam.12154] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Affiliation(s)
- Emiliano Mori
- Dipartimento di Scienze della VitaUniversità degli Studi di Siena Via P.A. Mattioli 4 53100 Siena Italy
| | - Luca Nerva
- Research Centre for Viticulture and EnologyCREA Via XXVIII Aprile 26 31015 Conegliano (Treviso) Italy
- Institute for Sustainable Plant Protection Strada delle Cacce 73 10135 Torino Italy
| | - Sandro Lovari
- Dipartimento di Scienze della VitaUniversità degli Studi di Siena Via P.A. Mattioli 4 53100 Siena Italy
- Museo di Storia Naturale della Maremma Strada Corsini 5 58100 Grosseto Italy
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Rozzi R, Palombo MR. Lights and shadows in the evolutionary patterns of insular bovids. Integr Zool 2014; 9:213-228. [PMID: 24673764 DOI: 10.1111/1749-4877.12055] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Endemic bovids are intriguing elements of insular faunas. The living species include the Japanese serow (Capricornis crispus) and the Formosan serow (C. swinhoei), the tamaraw from Mindoro, Philippines, (Bubalus mindorensis) and the anoas (B. depressicornis and B. quarlesi), 2 species of dwarf buffalos endemic to Sulawesi, Indonesia. Fossil endemic bovids are only recorded in some Asian, North American and Western Mediterranean islands. Here we present a comprehensive overview of the changes in body size and evolutionary patterns exhibited by both extant and extinct insular bovids. Our appraisal indicates that each insular representative of Bovidae shows its own peculiar evolutionary model, albeit some parallel trends exist (e.g. reduction in body size, allometric changes in limb bones, alteration of the life history traits). Some changes in morphology (e.g. the simplification of horn cores, the increase in hypsodonty, the acquisition of a 'low-gear' locomotion), for instance, appear as common, albeit not general, patterns triggered by a combination of selective forces. Body size patterns support the 'generality of the island rule' and suggest that biotic interaction had/have a major role in influencing body size evolution in these species, although in different ways on different islands. All things considered, available evidence suggest that a major role in the evolution of insular bovids is played by the structure of the insular community, the nature of available niches and by the dynamics of ecological interactions.
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Affiliation(s)
- Roberto Rozzi
- Department of Earth Sciences, Sapienza, University of Rome, Rome, Italy
| | - Maria Rita Palombo
- Department of Earth Sciences, Sapienza, University of Rome, Rome, Italy.,Consiglio Nazionale delle Ricerche-Istituto di Geologia Ambientale e Geoingegneria (DNR-IGAG), Rome, Italy
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Hieronymus TL, Witmer LM, Tanke DH, Currie PJ. The Facial Integument of Centrosaurine Ceratopsids: Morphological and Histological Correlates of Novel Skin Structures. Anat Rec (Hoboken) 2009; 292:1370-96. [DOI: 10.1002/ar.20985] [Citation(s) in RCA: 57] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Abstract
As a classical example of a sexually selected trait, the horns of male bovids offer a prime opportunity to identify predictors of the intensity of sexual selection. Here I use the comparative method to quantify sexual and natural selection pressures behind interspecific variation in horn length. I show that male horn length depends on factors proposed to affect the mean mate number per mating male, correlating positively with group size and negatively with male territoriality. This suggests that whereas group size increases the opportunity for sexual selection, territoriality reduces it because territorial males are unable to follow and monopolize female groups as effectively as males in nonterritorial species. Sexual body size dimorphism also correlates positively with group size and negatively with territoriality, corroborating these factors as predictors of the intensity of sexual selection on males. Female horn length was unaffected by the factors related to mating system, suggesting that this trait is mainly under natural selection. Using female horn length as a proxy for forces of natural selection revealed a negative effect on male horn length. Thus where natural selection favors female horns, possibly as effective weapons against predators, a similar selection pressure on males might prevent them from evolving too elaborate horns through sexual selection. There was no correlation found between horn length and latitude, thus providing no support for the hypothesis that horns have a thermoregulatory function.
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Affiliation(s)
- Jakob Bro-Jørgensen
- Department of Biological and Environmental Science, University of Jyväskylä, Finland.
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