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Li J, Zhao M, Zhang X, Zheng Z, Yao D, Yang S, Chen T, Zhang Y, Aweya JJ. The evolutionary adaptation of shrimp hemocyanin subtypes and the consequences on their structure and functions. FISH & SHELLFISH IMMUNOLOGY 2024; 145:109347. [PMID: 38160900 DOI: 10.1016/j.fsi.2023.109347] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/16/2023] [Revised: 12/22/2023] [Accepted: 12/27/2023] [Indexed: 01/03/2024]
Abstract
Hemocyanin is the main respiratory protein of arthropods and is formed by hexameric and/or oligomeric subunits. Due to changes in the living environment and gene rearrangement, various hemocyanin subtypes and subunits evolved in crustaceans. This paper reviews the various hemocyanin subtypes and isoforms in shrimp and analyses published genomic data of sixteen hemocyanin family genes from Litopenaeus vannamei to explore the evolution of hemocyanin genes, subunits, and protein structure. Analysis of hemocyanin subtypes distribution and structure in various tissues was also performed and related to multiple and tissue-specific functions, i.e., immunological activity, immune signaling, phenoloxidase activity, modulation of microbiota homeostasis, and energy metabolism. The functional diversity of shrimp hemocyanin due to molecular polymorphism, transcriptional regulation, alternative splicing, degradation into functional peptides, interaction with other proteins or genes, and structural differences will also be highlighted for future research. Inferences would be drawn from other crustaceans to explain how evolution has changed the structure-function of hemocyanin and its implication for evolutionary research into the multifunctionality of hemocyanin and other related proteins in shrimp.
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Affiliation(s)
- Jiaxi Li
- Guangdong Provincial Key Laboratory of Marine Biotechnology, Institute of Marine Sciences, Shantou University, Shantou, 515063, China
| | - Mingming Zhao
- Guangdong Provincial Key Laboratory of Marine Biotechnology, Institute of Marine Sciences, Shantou University, Shantou, 515063, China
| | - Xin Zhang
- Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, 510301, China
| | - Zhihong Zheng
- Guangdong Provincial Key Laboratory of Marine Biotechnology, Institute of Marine Sciences, Shantou University, Shantou, 515063, China
| | - Defu Yao
- Guangdong Provincial Key Laboratory of Marine Biotechnology, Institute of Marine Sciences, Shantou University, Shantou, 515063, China
| | - Shen Yang
- Fujian Provincial Key Laboratory of Food Microbiology and Enzyme Engineering, College of Ocean Food and Biological Engineering, Jimei University, Xiamen, 361021, China
| | - Ting Chen
- Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, 510301, China
| | - Yueling Zhang
- Guangdong Provincial Key Laboratory of Marine Biotechnology, Institute of Marine Sciences, Shantou University, Shantou, 515063, China.
| | - Jude Juventus Aweya
- Fujian Provincial Key Laboratory of Food Microbiology and Enzyme Engineering, College of Ocean Food and Biological Engineering, Jimei University, Xiamen, 361021, China.
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Pal K, Barman S, Bag J. Enzymatic Substrate Inhibition in Metal Free Catecholase Activity. Chem Biodivers 2023; 20:e202201166. [PMID: 36762430 DOI: 10.1002/cbdv.202201166] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2022] [Revised: 02/09/2023] [Accepted: 02/09/2023] [Indexed: 02/11/2023]
Abstract
The catecholase activities were routinely modeled using transition metal complexes as catalyst and in some case basic pH were used as a reaction condition. In this article, the catalytic aerobic oxidation of proxy substrate 3,5-di-tert-butylcatechol (DTBC) in methanol using triethylamine/diethylamine as catalyst was demonstrated as a functional mimic of catecholase activity. The kinetic manifestation of DTBC oxidation was explained as enzymatic substrate inhibition pattern in Michaelis-Menten kinetic model. The mechanistic insight of the aerobic oxidation of DTBC was further validated using various spectroscopic techniques and DFT methods.
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Affiliation(s)
- Kuntal Pal
- Department of Chemistry, University of Calcutta, 92 A.P.C Road, Kolkata, 700009, India
| | - Souvik Barman
- Department of Chemistry, University of Calcutta, 92 A.P.C Road, Kolkata, 700009, India
| | - Jayanta Bag
- Department of Chemistry, University of Calcutta, 92 A.P.C Road, Kolkata, 700009, India
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Hotaling S, Shah AA, McGowan KL, Tronstad LM, Giersch JJ, Finn DS, Woods HA, Dillon ME, Kelley JL. Mountain stoneflies may tolerate warming streams: Evidence from organismal physiology and gene expression. GLOBAL CHANGE BIOLOGY 2020; 26:5524-5538. [PMID: 32698241 DOI: 10.1111/gcb.15294] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2019] [Accepted: 07/03/2020] [Indexed: 06/11/2023]
Abstract
Rapid glacier recession is altering the physical conditions of headwater streams. Stream temperatures are predicted to rise and become increasingly variable, putting entire meltwater-associated biological communities at risk of extinction. Thus, there is a pressing need to understand how thermal stress affects mountain stream insects, particularly where glaciers are likely to vanish on contemporary timescales. In this study, we measured the critical thermal maximum (CTMAX ) of stonefly nymphs representing multiple species and a range of thermal regimes in the high Rocky Mountains, USA. We then collected RNA-sequencing data to assess how organismal thermal stress translated to the cellular level. Our focal species included the meltwater stonefly, Lednia tumana, which was recently listed under the U.S. Endangered Species Act due to climate-induced habitat loss. For all study species, critical thermal maxima (CTMAX > 20°C) far exceeded the stream temperatures mountain stoneflies experience (<10°C). Moreover, while evidence for a cellular stress response was present, we also observed constitutive expression of genes encoding proteins known to underlie thermal stress (i.e., heat shock proteins) even at low temperatures that reflected natural conditions. We show that high-elevation aquatic insects may not be physiologically threatened by short-term exposure to warm temperatures and that longer-term physiological responses or biotic factors (e.g., competition) may better explain their extreme distributions.
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Affiliation(s)
- Scott Hotaling
- School of Biological Sciences, Washington State University, Pullman, WA, USA
| | - Alisha A Shah
- Division of Biological Sciences, University of Montana, Missoula, MT, USA
| | - Kerry L McGowan
- School of Biological Sciences, Washington State University, Pullman, WA, USA
| | - Lusha M Tronstad
- Wyoming Natural Diversity Database, University of Wyoming, Laramie, WY, USA
| | - J Joseph Giersch
- U.S. Geological Survey, Northern Rocky Mountain Science Center, West Glacier, MT, USA
| | - Debra S Finn
- Department of Biology, Missouri State University, Springfield, MO, USA
| | - H Arthur Woods
- Division of Biological Sciences, University of Montana, Missoula, MT, USA
| | - Michael E Dillon
- Department of Zoology and Physiology and Program in Ecology, University of Wyoming, Laramie, WY, USA
| | - Joanna L Kelley
- School of Biological Sciences, Washington State University, Pullman, WA, USA
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Malison RL, Ellis BK, DelVecchia AG, Jacobson H, Hand BK, Luikart G, Woods HA, Gamboa M, Watanabe K, Stanford JA. Remarkable anoxia tolerance by stoneflies from a floodplain aquifer. Ecology 2020; 101:e03127. [PMID: 32598026 DOI: 10.1002/ecy.3127] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/12/2019] [Revised: 03/30/2020] [Accepted: 05/21/2020] [Indexed: 11/07/2022]
Abstract
Alluvial aquifers are key components of river floodplains and biodiversity worldwide, but they contain extreme environmental conditions and have limited sources of carbon for sustaining food webs. Despite this, they support abundant populations of aquifer stoneflies that have large proportions of their biomass carbon derived from methane. Methane is typically produced in freshwater ecosystems in anoxic conditions, while stoneflies (Order: Plecoptera) are thought to require highly oxygenated water. The potential importance of methane-derived food resources raises the possibility that stonefly consumers have evolved anoxia-resistant behaviors and physiologies. Here we tested the anoxic and hypoxic responses of 2,445 stonefly individuals in three aquifer species and nine benthic species. We conducted experimental trials in which we reduced oxygen levels, documented locomotor activity, and measured survival rates. Compared to surface-dwelling benthic relatives, stoneflies from the alluvial aquifer on the Flathead River (Montana) performed better in hypoxic and anoxic conditions. Aquifer species sustained the ability to walk after 4-76 h of anoxia vs. 1 h for benthic species and survived on average three times longer than their benthic counterparts. Aquifer stoneflies also sustained aerobic respiration down to much lower levels of ambient oxygen. We show that aquifer taxa have gene sequences for hemocyanin, an oxygen transport respiratory protein, representing a possible mechanism for surviving low oxygen. This remarkable ability to perform well in low-oxygen conditions is unique within the entire order of stoneflies (Plecoptera) and uncommon in other freshwater invertebrates. These results show that aquifer stoneflies can exploit rich carbon resources available in anoxic zones, which may explain their extraordinarily high abundance in gravel-bed floodplain aquifers. These stoneflies are part of a novel food web contributing biodiversity to river floodplains.
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Affiliation(s)
- Rachel L Malison
- The University of Montana, Flathead Lake Biological Station, 32125 Bio Station Lane, Polson, Montana, 59801, USA
| | - Bonnie K Ellis
- The University of Montana, Flathead Lake Biological Station, 32125 Bio Station Lane, Polson, Montana, 59801, USA
| | - Amanda G DelVecchia
- The University of Montana, Flathead Lake Biological Station, 32125 Bio Station Lane, Polson, Montana, 59801, USA
| | - Hailey Jacobson
- The University of Montana, Flathead Lake Biological Station, 32125 Bio Station Lane, Polson, Montana, 59801, USA
| | - Brian K Hand
- The University of Montana, Flathead Lake Biological Station, 32125 Bio Station Lane, Polson, Montana, 59801, USA
| | - Gordon Luikart
- The University of Montana, Flathead Lake Biological Station, 32125 Bio Station Lane, Polson, Montana, 59801, USA
| | - H Arthur Woods
- Department of Biological Sciences, The University of Montana, Missoula, Montana, 59812, USA
| | - Maribet Gamboa
- Ehime University, Bunkyo-cho 3, Matsuyama, 790-8577, Japan
| | - Kozo Watanabe
- Ehime University, Bunkyo-cho 3, Matsuyama, 790-8577, Japan
| | - Jack A Stanford
- The University of Montana, Flathead Lake Biological Station, 32125 Bio Station Lane, Polson, Montana, 59801, USA
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Riciluca KCT, Borges AC, Mello JFR, de Oliveira UC, Serdan DC, Florez-Ariza A, Chaparro E, Nishiyama MY, Cassago A, Junqueira-de-Azevedo ILM, van Heel M, Silva PI, Portugal RV. Myriapod haemocyanin: the first three-dimensional reconstruction of Scolopendra subspinipes and preliminary structural analysis of S. viridicornis. Open Biol 2020; 10:190258. [PMID: 32228398 PMCID: PMC7241075 DOI: 10.1098/rsob.190258] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023] Open
Abstract
Haemocyanins (Hcs) are copper-containing, respiratory proteins that occur in the haemolymph of many arthropod species. Here, we report the presence of Hcs in the chilopode Myriapoda, demonstrating that these proteins are more widespread among the Arthropoda than previously thought. The analysis of transcriptome of S. subspinipes subpinipes reveals the presence of two distinct subunits of Hc, where the signal peptide is present, and six of prophenoloxidase (PPO), where the signal peptide is absent, in the 75 kDa range. Size exclusion chromatography profiles indicate different quaternary organization for Hc of both species, which was corroborated by TEM analysis: S. viridicornis Hc is a 6 × 6-mer and S. subspinipes Hc is a 3 × 6-mer, which resembles the half-structure of the 6 × 6-mer but also includes the presence of phenoloxidases, since the 1 × 6-mer quaternary organization is commonly associated with hexamers of PPO. Studies with Chelicerata showed that PPO activity are exclusively associated with the Hcs. This study indicates that Scolopendra may have different proteins playing oxygen transport (Hc) and PO function, both following the hexameric oligomerization observed in Hcs.
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Affiliation(s)
- K C T Riciluca
- Laboratório Nacional de Nanotecnologia (LNNano), Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), CEP 13083-970, Campinas, Brazil.,Laboratório de Toxinologia Aplicada (LETA), Centro de Toxinas, Imuno-Resposta e Sinalização Celular (CeTICS/CEPID) - Instituto Butantan, São Paulo, Brazil
| | - A C Borges
- Laboratório Nacional de Nanotecnologia (LNNano), Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), CEP 13083-970, Campinas, Brazil
| | - J F R Mello
- Laboratório Nacional de Nanotecnologia (LNNano), Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), CEP 13083-970, Campinas, Brazil
| | - U C de Oliveira
- Laboratório de Toxinologia Aplicada (LETA), Centro de Toxinas, Imuno-Resposta e Sinalização Celular (CeTICS/CEPID) - Instituto Butantan, São Paulo, Brazil
| | - D C Serdan
- Laboratório Nacional de Nanotecnologia (LNNano), Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), CEP 13083-970, Campinas, Brazil
| | - A Florez-Ariza
- Laboratório Nacional de Nanotecnologia (LNNano), Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), CEP 13083-970, Campinas, Brazil
| | - E Chaparro
- Laboratório de Toxinologia Aplicada (LETA), Centro de Toxinas, Imuno-Resposta e Sinalização Celular (CeTICS/CEPID) - Instituto Butantan, São Paulo, Brazil.,Interunidades em Biotecnologia, Universidade de São Paulo, São Paulo, Brazil
| | - M Y Nishiyama
- Laboratório de Toxinologia Aplicada (LETA), Centro de Toxinas, Imuno-Resposta e Sinalização Celular (CeTICS/CEPID) - Instituto Butantan, São Paulo, Brazil
| | - A Cassago
- Laboratório Nacional de Nanotecnologia (LNNano), Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), CEP 13083-970, Campinas, Brazil
| | - I L M Junqueira-de-Azevedo
- Laboratório de Toxinologia Aplicada (LETA), Centro de Toxinas, Imuno-Resposta e Sinalização Celular (CeTICS/CEPID) - Instituto Butantan, São Paulo, Brazil
| | - M van Heel
- Laboratório Nacional de Nanotecnologia (LNNano), Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), CEP 13083-970, Campinas, Brazil
| | - P I Silva
- Laboratório de Toxinologia Aplicada (LETA), Centro de Toxinas, Imuno-Resposta e Sinalização Celular (CeTICS/CEPID) - Instituto Butantan, São Paulo, Brazil.,Interunidades em Biotecnologia, Universidade de São Paulo, São Paulo, Brazil
| | - R V Portugal
- Laboratório Nacional de Nanotecnologia (LNNano), Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), CEP 13083-970, Campinas, Brazil
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Huerta-Ocampo JA, García-Muñoz MS, Velarde-Salcedo AJ, Hernández-Domínguez EE, González-Escobar JL, Barrera-Pacheco A, Grajales-Lagunes A, Barba de la Rosa AP. The proteome map of the escamolera ant (Liometopum apiculatum Mayr) larvae reveals immunogenic proteins and several hexamerin proteoforms. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS 2018; 28:107-121. [PMID: 30149319 DOI: 10.1016/j.cbd.2018.07.004] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2018] [Revised: 07/20/2018] [Accepted: 07/20/2018] [Indexed: 10/28/2022]
Abstract
The larvae of escamolera ant (Liometopum apiculatum Mayr) have been considered a delicacy since Pre-Hispanic times. The increased demand for this stew has led to massive collection of ant nests. Yet biological aspects of L. apiculatum larvae remain unknown, and mapping the proteome of this species is important for understanding its biological characteristics. Two-dimensional gel electrophoresis (2-DE) followed by liquid chromatography-tandem mass spectrometry (LC-MS/MS) analysis was used to characterize the larvae proteome profile. From 380 protein spots analyzed, 174 were identified by LC-MS/MS and homology search against the Hymenoptera subset of the NCBInr protein database using the Mascot search engine. Peptide de novo sequencing and homology-based alignment allowed the identification of 36 additional protein spots. Identified proteins were classified by cellular location, molecular function, and biological process according to the Gene Ontology annotation. Immunity- and defense-related proteins were identified including PPIases, FK506, PEBP, and chitinases. Several hexamerin proteoforms were identified and the cDNA of the most abundant protein detected in the 2-DE map was isolated and characterized. L. apiculatum hexamerin (LaHEX, GeneBank accession no. MH256667) contains an open reading frame of 2199 bp encoding a polypeptide of 733 amino acid residues with a calculated molecular mass of 82.41 kDa. LaHEX protein is more similar to HEX110 than HEX70 from Apis mellifera. Down-regulation of LaHEX was observed throughout ant development. This work represents the first proteome map as well as the first hexamerin characterized from L. apiculatum larvae.
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Affiliation(s)
- José A Huerta-Ocampo
- IPICyT, Instituto Potosino de Investigación Científica y Tecnológica A.C., Camino a la Presa San José No. 2055, Lomas 4a Sección, 78216 San Luis Potosí, S.L.P, Mexico; CONACYT-Centro de Investigación en Alimentación y Desarrollo A.C., Carretera a La Victoria Km 0.6, Edificio C, C.P 83304 Hermosillo, Sonora, Mexico
| | - María S García-Muñoz
- Facultad de Ciencias Químicas, Universidad Autónoma de San Luis Potosí, Av. Dr. Nava No.6, Zona Universitaria, C.P. 78200 San Luis Potosí, S.L.P, Mexico
| | - Aída J Velarde-Salcedo
- IPICyT, Instituto Potosino de Investigación Científica y Tecnológica A.C., Camino a la Presa San José No. 2055, Lomas 4a Sección, 78216 San Luis Potosí, S.L.P, Mexico
| | - Eric E Hernández-Domínguez
- IPICyT, Instituto Potosino de Investigación Científica y Tecnológica A.C., Camino a la Presa San José No. 2055, Lomas 4a Sección, 78216 San Luis Potosí, S.L.P, Mexico
| | - Jorge L González-Escobar
- IPICyT, Instituto Potosino de Investigación Científica y Tecnológica A.C., Camino a la Presa San José No. 2055, Lomas 4a Sección, 78216 San Luis Potosí, S.L.P, Mexico
| | - Alberto Barrera-Pacheco
- IPICyT, Instituto Potosino de Investigación Científica y Tecnológica A.C., Camino a la Presa San José No. 2055, Lomas 4a Sección, 78216 San Luis Potosí, S.L.P, Mexico
| | - Alicia Grajales-Lagunes
- Facultad de Ciencias Químicas, Universidad Autónoma de San Luis Potosí, Av. Dr. Nava No.6, Zona Universitaria, C.P. 78200 San Luis Potosí, S.L.P, Mexico.
| | - Ana P Barba de la Rosa
- IPICyT, Instituto Potosino de Investigación Científica y Tecnológica A.C., Camino a la Presa San José No. 2055, Lomas 4a Sección, 78216 San Luis Potosí, S.L.P, Mexico.
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Mouadili A, Zerrouki A, Herrag L, Hammouti B, El Kadiri S, Touzani R. Catechol oxidation: activity studies using electron-rich nitrogen-based ligands. RESEARCH ON CHEMICAL INTERMEDIATES 2012. [DOI: 10.1007/s11164-012-0558-1] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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