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Zorin EA, Sulima AS, Zhernakov AI, Kuzmina DO, Rakova VA, Kliukova MS, Romanyuk DA, Kulaeva OA, Akhtemova GA, Shtark OY, Tikhonovich IA, Zhukov VA. Genomic and Transcriptomic Analysis of Pea ( Pisum sativum L.) Breeding Line 'Triumph' with High Symbiotic Responsivity. PLANTS (BASEL, SWITZERLAND) 2023; 13:78. [PMID: 38202386 PMCID: PMC10781049 DOI: 10.3390/plants13010078] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2023] [Revised: 12/12/2023] [Accepted: 12/18/2023] [Indexed: 01/12/2024]
Abstract
Pea (Pisum sativum L.), like most legumes, forms mutualistic symbioses with nodule bacteria and arbuscular mycorrhizal (AM) fungi. The positive effect of inoculation is partially determined by the plant genotype; thus, pea varieties with high and low symbiotic responsivity have been described, but the molecular genetic basis of this trait remains unknown. Here, we compare the symbiotically responsive breeding line 'Triumph' of grain pea with its parental cultivars 'Vendevil' (a donor of high symbiotic responsivity) and 'Classic' (a donor of agriculturally valuable traits) using genome and transcriptome sequencing. We show that 'Triumph' inherited one-fourth of its genome from 'Vendevil', including the genes related to AM and nodule formation, and reveal that under combined inoculation with nodule bacteria and AM fungi, 'Triumph' and 'Vendevil', in contrast to 'Classic', demonstrate similar up-regulation of the genes related to solute transport, hormonal regulation and flavonoid biosynthesis in their roots. We also identify the gene PsGLP2, whose expression pattern distinguishing 'Triumph' and 'Vendevil' from 'Classic' correlates with difference within the promoter region sequence, making it a promising marker for the symbiotic responsivity trait. The results of this study may be helpful for future molecular breeding programs aimed at creation of symbiotically responsive cultivars of pea.
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Affiliation(s)
- Evgeny A. Zorin
- All-Russia Research Institute for Agricultural Microbiology (ARRIAM), Pushkin, St. Petersburg 196608, Russia; (E.A.Z.); (A.S.S.); (A.I.Z.); (D.O.K.); (M.S.K.); (D.A.R.); (O.A.K.); (G.A.A.); (O.Y.S.); (I.A.T.)
| | - Anton S. Sulima
- All-Russia Research Institute for Agricultural Microbiology (ARRIAM), Pushkin, St. Petersburg 196608, Russia; (E.A.Z.); (A.S.S.); (A.I.Z.); (D.O.K.); (M.S.K.); (D.A.R.); (O.A.K.); (G.A.A.); (O.Y.S.); (I.A.T.)
| | - Aleksandr I. Zhernakov
- All-Russia Research Institute for Agricultural Microbiology (ARRIAM), Pushkin, St. Petersburg 196608, Russia; (E.A.Z.); (A.S.S.); (A.I.Z.); (D.O.K.); (M.S.K.); (D.A.R.); (O.A.K.); (G.A.A.); (O.Y.S.); (I.A.T.)
| | - Daria O. Kuzmina
- All-Russia Research Institute for Agricultural Microbiology (ARRIAM), Pushkin, St. Petersburg 196608, Russia; (E.A.Z.); (A.S.S.); (A.I.Z.); (D.O.K.); (M.S.K.); (D.A.R.); (O.A.K.); (G.A.A.); (O.Y.S.); (I.A.T.)
| | - Valeria A. Rakova
- Center of Genetics and Life Sciences, Sirius University of Science and Technology, Sirius 354340, Russia;
| | - Marina S. Kliukova
- All-Russia Research Institute for Agricultural Microbiology (ARRIAM), Pushkin, St. Petersburg 196608, Russia; (E.A.Z.); (A.S.S.); (A.I.Z.); (D.O.K.); (M.S.K.); (D.A.R.); (O.A.K.); (G.A.A.); (O.Y.S.); (I.A.T.)
| | - Daria A. Romanyuk
- All-Russia Research Institute for Agricultural Microbiology (ARRIAM), Pushkin, St. Petersburg 196608, Russia; (E.A.Z.); (A.S.S.); (A.I.Z.); (D.O.K.); (M.S.K.); (D.A.R.); (O.A.K.); (G.A.A.); (O.Y.S.); (I.A.T.)
| | - Olga A. Kulaeva
- All-Russia Research Institute for Agricultural Microbiology (ARRIAM), Pushkin, St. Petersburg 196608, Russia; (E.A.Z.); (A.S.S.); (A.I.Z.); (D.O.K.); (M.S.K.); (D.A.R.); (O.A.K.); (G.A.A.); (O.Y.S.); (I.A.T.)
| | - Gulnar A. Akhtemova
- All-Russia Research Institute for Agricultural Microbiology (ARRIAM), Pushkin, St. Petersburg 196608, Russia; (E.A.Z.); (A.S.S.); (A.I.Z.); (D.O.K.); (M.S.K.); (D.A.R.); (O.A.K.); (G.A.A.); (O.Y.S.); (I.A.T.)
| | - Oksana Y. Shtark
- All-Russia Research Institute for Agricultural Microbiology (ARRIAM), Pushkin, St. Petersburg 196608, Russia; (E.A.Z.); (A.S.S.); (A.I.Z.); (D.O.K.); (M.S.K.); (D.A.R.); (O.A.K.); (G.A.A.); (O.Y.S.); (I.A.T.)
| | - Igor A. Tikhonovich
- All-Russia Research Institute for Agricultural Microbiology (ARRIAM), Pushkin, St. Petersburg 196608, Russia; (E.A.Z.); (A.S.S.); (A.I.Z.); (D.O.K.); (M.S.K.); (D.A.R.); (O.A.K.); (G.A.A.); (O.Y.S.); (I.A.T.)
- Center of Genetics and Life Sciences, Sirius University of Science and Technology, Sirius 354340, Russia;
| | - Vladimir A. Zhukov
- All-Russia Research Institute for Agricultural Microbiology (ARRIAM), Pushkin, St. Petersburg 196608, Russia; (E.A.Z.); (A.S.S.); (A.I.Z.); (D.O.K.); (M.S.K.); (D.A.R.); (O.A.K.); (G.A.A.); (O.Y.S.); (I.A.T.)
- Center of Genetics and Life Sciences, Sirius University of Science and Technology, Sirius 354340, Russia;
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Hamza Z, Rachid H, Mariam EA, Kamal L, Sara E, Rachid AB, Laila M, Papazoglou EG, Kenza L, Mohamed H, Abdelaziz S, Ahmed O. Phytostabilization of store‐and‐release cover made with phosphate mine wastes in arid and semiarid climate using wild local plants. ACTA ACUST UNITED AC 2020. [DOI: 10.1002/rem.21662] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
- Zine Hamza
- Department of Biology Faculty of Sciences‐ Semlalia, Laboratory of Microbial Biotechnology, Agrosciences and Environment Cadi Ayyad University Marrakech Morocco
| | - Hakkou Rachid
- Materials and Environmental Chemistry Laboratory, Department of Chemistry, Faculty of Sciences and Techniques Marrakech University of Cadi Ayyad Marrakech Morocco
- MSN Department University Mohammed VI Polytechnique Benguerir Morocco
| | - El Adnani Mariam
- Department of Mine and Mineralurgy, Laboratory of Mining, Environment, and Sustainable Development, School of Mines of Rabat University of Mohammed V‐ Agdal Rabat Morocco
| | - Lamnai Kamal
- Department of Biology, Faculty of Sciences Semlalia, Laboratory of Biotechnology and Plant Physiology University of Cadi Ayyad Marrakech Morocco
| | - Elgadi Sara
- Department of Biology Faculty of Sciences‐ Semlalia, Laboratory of Microbial Biotechnology, Agrosciences and Environment Cadi Ayyad University Marrakech Morocco
| | - Ait B. Rachid
- Department of Biology Faculty of Sciences‐ Semlalia, Laboratory of Microbial Biotechnology, Agrosciences and Environment Cadi Ayyad University Marrakech Morocco
| | - Midhat Laila
- Department of Biology, National Center for Research and Studies on Water and Energy, CNEREE CNEREE, Cadi Ayyad University Marrakech Morocco
| | - Eleni G. Papazoglou
- Department of Crop Science, Laboratory of Systematic Botany, School of Agricultural Production, Infrastructure and Environment Agricultural University of Athens Athens Greece
| | - Loutfi Kenza
- Department of Biology, Faculty of Sciences Semlalia, Laboratory of Biotechnology and Plant Physiology University of Cadi Ayyad Marrakech Morocco
| | - Hafidi Mohamed
- Department of Biology Faculty of Sciences‐ Semlalia, Laboratory of Microbial Biotechnology, Agrosciences and Environment Cadi Ayyad University Marrakech Morocco
| | - Smouni Abdelaziz
- Department of Biology, Faculty of Science, Laboratory of Physiology and Plant Biotechnology University of Mohammed V ‐ Agdal Rabat Morocco
| | - Ouhammou Ahmed
- Department of Biology Faculty of Sciences‐ Semlalia, Laboratory of Microbial Biotechnology, Agrosciences and Environment Cadi Ayyad University Marrakech Morocco
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Mamontova T, Afonin AM, Ihling C, Soboleva A, Lukasheva E, Sulima AS, Shtark OY, Akhtemova GA, Povydysh MN, Sinz A, Frolov A, Zhukov VA, Tikhonovich IA. Profiling of Seed Proteome in Pea ( Pisum sativum L.) Lines Characterized with High and Low Responsivity to Combined Inoculation with Nodule Bacteria and Arbuscular Mycorrhizal Fungi. Molecules 2019; 24:E1603. [PMID: 31018578 PMCID: PMC6514749 DOI: 10.3390/molecules24081603] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2019] [Revised: 04/14/2019] [Accepted: 04/18/2019] [Indexed: 12/30/2022] Open
Abstract
Legume crops represent the major source of food protein and contribute to human nutrition and animal feeding. An essential improvement of their productivity can be achieved by symbiosis with beneficial soil microorganisms-rhizobia (Rh) and arbuscular mycorrhizal (AM) fungi. The efficiency of these interactions depends on plant genotype. Recently, we have shown that, after simultaneous inoculation with Rh and AM, the productivity gain of pea (Pisum sativum L) line K-8274, characterized by high efficiency of interaction with soil microorganisms (EIBSM), was higher in comparison to a low-EIBSM line K-3358. However, the molecular mechanisms behind this effect are still uncharacterized. Therefore, here, we address the alterations in pea seed proteome, underlying the symbiosis-related productivity gain, and identify 111 differentially expressed proteins in the two lines. The high-EIBSM line K-8274 responded to inoculation by prolongation of seed maturation, manifested by up-regulation of proteins involved in cellular respiration, protein biosynthesis, and down-regulation of late-embryogenesis abundant (LEA) proteins. In contrast, the low-EIBSM line K-3358 demonstrated lower levels of the proteins, related to cell metabolism. Thus, we propose that the EIBSM trait is linked to prolongation of seed filling that needs to be taken into account in pulse crop breeding programs. The raw data have been deposited to the ProteomeXchange with identifier PXD013479.
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Affiliation(s)
- Tatiana Mamontova
- Department of Biochemistry, St. Petersburg State University, 199178 St. Petersburg, Russia.
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, 06120 Halle (Saale), Germany.
| | - Alexey M Afonin
- Department of Biotechnology, All-Russia Research Institute for Agricultural Microbiology, 196608 St. Petersburg, Russia.
| | - Christian Ihling
- Department of Pharmaceutical Chemistry and Bioanalytics, Institute of Pharmacy, Martin-Luther Universität Halle-Wittenberg, 06120 Halle (Saale), Germany.
| | - Alena Soboleva
- Department of Biochemistry, St. Petersburg State University, 199178 St. Petersburg, Russia.
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, 06120 Halle (Saale), Germany.
| | - Elena Lukasheva
- Department of Biochemistry, St. Petersburg State University, 199178 St. Petersburg, Russia.
| | - Anton S Sulima
- Department of Biotechnology, All-Russia Research Institute for Agricultural Microbiology, 196608 St. Petersburg, Russia.
| | - Oksana Y Shtark
- Department of Biotechnology, All-Russia Research Institute for Agricultural Microbiology, 196608 St. Petersburg, Russia.
| | - Gulnara A Akhtemova
- Department of Biotechnology, All-Russia Research Institute for Agricultural Microbiology, 196608 St. Petersburg, Russia.
| | - Maria N Povydysh
- R&D department, Saint-Petersburg State Chemical and Pharmaceutical University, 197376 St. Petersburg, Russia.
| | - Andrea Sinz
- Department of Pharmaceutical Chemistry and Bioanalytics, Institute of Pharmacy, Martin-Luther Universität Halle-Wittenberg, 06120 Halle (Saale), Germany.
| | - Andrej Frolov
- Department of Biochemistry, St. Petersburg State University, 199178 St. Petersburg, Russia.
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, 06120 Halle (Saale), Germany.
| | - Vladimir A Zhukov
- Department of Biotechnology, All-Russia Research Institute for Agricultural Microbiology, 196608 St. Petersburg, Russia.
| | - Igor A Tikhonovich
- Department of Biotechnology, All-Russia Research Institute for Agricultural Microbiology, 196608 St. Petersburg, Russia.
- Department of Genetics and Biotechnology, St. Petersburg State University, 199034 St. Petersburg, Russia.
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Arbuscular mycorrhiza development in pea (Pisum sativum L.) mutants impaired in five early nodulation genes including putative orthologs of NSP1 and NSP2. Symbiosis 2016. [DOI: 10.1007/s13199-016-0382-2] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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