Hulsey-Vincent H, Athanasopoulos A, McGehee A, Kowalski JR, Dahlberg C. A Fiji protocol for analyzing puncta is a robust tool for measuring GLR-1::GFP accumulation in the ventral nerve cord of
C. elegans.
MICROPUBLICATION BIOLOGY 2023;
2023:10.17912/micropub.biology.001004. [PMID:
38170032 PMCID:
PMC10760542 DOI:
10.17912/micropub.biology.001004]
[Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Figures] [Subscribe] [Scholar Register] [Received: 09/22/2023] [Revised: 12/03/2023] [Accepted: 12/12/2023] [Indexed: 01/05/2024]
Abstract
In C. elegans, DAF-7/TGF-beta signaling regulates development, metabolism, and behavior. In addition loss of daf-7 leads to an increase of the glutamate receptor GLR-1. In daf-7(e1372) mutants, GLR-1 tagged with GFP (GLR-1::GFP) accumulates in wide puncta along the ventral nerve cord of the animal. Previous automated analyses of GLR-1::GFP accumulation relied on the proprietary software, IgorPro, for measurement of GLR-1::GFP puncta size, intensity, and density. We did a side-by-side comparison of analyses by IgorPro and an open source macro written for Fiji to analyze images from animals expressing GLR-1::GFP in wild type and daf-7(e1372) backgrounds. Analyses by the two programs were in strong agreement and are in accordance with previously published data on the effects of daf-7(e1372) on GLR-1::GFP accumulation. Based on these data, we conclude that the Fiji platform is a robust method for analyzing the accumulation of a fluorescently-tagged neurotransmitter receptor and that the Fiji puncta plugin will be applicable for image analysis for other neural markers.
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