Chromosome preference of disease genes and vectorization for the prediction of non-coding disease genes

Application of E-Commerce Recommendation Algorithm in Consumer Preference Prediction

Through user characteristic information, user interaction behavior, commodity characteristic information, recommendation engine, and related technologies in data mining, this paper makes a more in-depth study, and analyzes the problems of "big data volume", "cold start" and "data sparsity" in the recommender system in modern business websites. In response to these problems, this paper transforms the problem of large data volume into the problem of large user groups. Then, after using the k-means clustering algorithm to divide the large user group into homogeneous user groups to alleviate the problem, a combination of collaborative filtering algorithm and content-based recommendation algorithm in the homogeneous user group is proposed to alleviate this problem. The experimental precision and recall are both around 0.4, and when W=0.8, the F value is the largest.

Laplacian normalization and bi-random walks on heterogeneous networks for predicting lncRNA-disease associations

BACKGROUND

Evidences have increasingly indicated that lncRNAs (long non-coding RNAs) are deeply involved in important biological regulation processes leading to various human complex diseases. Experimental investigations of these disease associated lncRNAs are slow with high costs. Computational methods to infer potential associations between lncRNAs and diseases have become an effective prior-pinpointing approach to the experimental verification.

RESULTS

In this study, we develop a novel method for the prediction of lncRNA-disease associations using bi-random walks on a network merging the similarities of lncRNAs and diseases. Particularly, this method applies a Laplacian technique to normalize the lncRNA similarity matrix and the disease similarity matrix before the construction of the lncRNA similarity network and disease similarity network. The two networks are then connected via existing lncRNA-disease associations. After that, bi-random walks are applied on the heterogeneous network to predict the potential associations between the lncRNAs and the diseases. Experimental results demonstrate that the performance of our method is highly comparable to or better than the state-of-the-art methods for predicting lncRNA-disease associations. Our analyses on three cancer data sets (breast cancer, lung cancer, and liver cancer) also indicate the usefulness of our method in practical applications.

CONCLUSIONS

Our proposed method, including the construction of the lncRNA similarity network and disease similarity network and the bi-random walks algorithm on the heterogeneous network, could be used for prediction of potential associations between the lncRNAs and the diseases.