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Kolesnikova Y, Babenko D, Kadyrova I, Kolesnichenko S, Akhmaltdinova L, Korshukov I, Kabildina N, Sirota V, Zhumaliyeva V, Taizhanova D, Vazenmiller D, Turmukhambetova A. Association of four genetic variants with colorectal cancer in Kazakhstan population. Oncotarget 2021; 12:2215-2222. [PMID: 34676053 PMCID: PMC8522836 DOI: 10.18632/oncotarget.28070] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2021] [Accepted: 08/28/2021] [Indexed: 02/06/2023] Open
Abstract
The study was conducted to search for polymorphisms located in the 10th chromosome associated with colorectal adenocarcinoma in representatives of the Kazakhstan population. Study was performed with 282 colorectal cancer (CRC) patients and 159 controls. Genotyping of SNPs was performed by QuantStudio 12K Flex PCR. For four significant SNPs inheritance model analysis was performed. Increasing risk of CRC was noted for rs10795668 in log-additive model (OR = 1.45, 95% CI: 1.05–1.99, p = 0.023); for rs1035209 in log-additive model (OR = 1.79, 95% CI: 1.18–2.72, p = 0.003); for rs11190164 in log-additive model (OR = 1.67, 95% CI: 1.17–2.38, p = 0.004). Decreasing risk of CRC was noted for rs10506868 in log-additive model (OR = 0.56, 95% CI: 0.37–0.85, p = 0.006). We detected SNPs that are associated with CRC risk in the Kazakhstan population.
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Affiliation(s)
- Yevgeniya Kolesnikova
- Department of Biomedicine, Karaganda Medical University, Karaganda 100008, Kazakhstan
| | - Dmitriy Babenko
- Research and Scientific Center, Karaganda Medical University, Karaganda 100008, Kazakhstan
| | - Irina Kadyrova
- Shared Resource Laboratory, Karaganda Medical University, Karaganda 100008, Kazakhstan
| | | | | | - Ilya Korshukov
- Shared Resource Laboratory, Karaganda Medical University, Karaganda 100008, Kazakhstan
| | - Naylya Kabildina
- Department of Oncology and Radiation Diagnostics, Karaganda Medical University, Karaganda 100008, Kazakhstan
| | - Valentina Sirota
- Department of Oncology and Radiation Diagnostics, Karaganda Medical University, Karaganda 100008, Kazakhstan
| | - Vera Zhumaliyeva
- Department of Oncology and Radiation Diagnostics, Karaganda Medical University, Karaganda 100008, Kazakhstan
| | - Dana Taizhanova
- Department of Internal Medicine, Karaganda Medical University, Karaganda 100008, Kazakhstan
| | - Dmitriy Vazenmiller
- Department of Obstetrics, Gynecology and Perinatology, Karaganda Medical University, Karaganda 100008, Kazakhstan
| | - Anar Turmukhambetova
- Department of Strategic Development and Science, Karaganda Medical University, Karaganda 100008, Kazakhstan
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Burnett-Hartman AN, Newcomb PA, Peters U. Challenges With Colorectal Cancer Family History Assessment-Motivation to Translate Polygenic Risk Scores Into Practice. Gastroenterology 2020; 158:433-435. [PMID: 31682850 DOI: 10.1053/j.gastro.2019.10.030] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/25/2019] [Accepted: 10/29/2019] [Indexed: 12/14/2022]
Affiliation(s)
| | - Polly A Newcomb
- Member, Public Health Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, Washington
| | - Ulrike Peters
- Member and Associate Director, Public Health Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, Washington
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