The spatiotemporal context of individual specialization in resource use and environmental associations

1. Individual niche specialization is widespread in natural populations and has key implications for higher levels of biological organization. This phenomenon, however, has been primarily quantified in resource niche axes, overlooking individual variation in environmental associations (i.e. abiotic conditions organisms experience). 2. Here, we explore what we can learn from a multidimensional perspective of individual niche specialization that integrates resource use and environmental associations into a common framework. 3. By combining predictions from theory and simple simulations, we illustrate how (i) multidimensional intraspecific niche variation and (ii) the spatiotemporal context of interactions between conspecifics scale up to shape emergent patterns of the population niche. 4. Contemplating individual specialization as a multidimensional, unifying concept across biotic and abiotic niche axes is a fundamental step towards bringing this concept closer to the n-dimensional niche envisioned by Hutchinson.

Minimum chi-square method for estimating population size in capture-recapture experiments

Closed population capture-recapture estimation of population size is difficult under heterogeneous capture probabilities. We introduce the minimum chi-square method which can handle multi-occasion capture-recapture data. It complements likelihood methods with elements that can lead to confidence intervals and assessment of goodness-of-fit. We conduct a comprehensive study on the minimum chi-square method for estimating the size of a closed population using multiple-occasion capture-recapture data under heterogeneous capture probability. We also develop two different bootstrap techniques that can be combined with any underlying estimator, be it the minimum chi-square estimator or a likelihood estimator, to perform useful inference for estimating population size. We present a simulation study on the minimum chi-square method and apply it to analyze white stork multiple capture-recapture data. Under certain conditions, the chi-square method outperforms the likelihood based methods.

Intraspecific competition and individual behaviour but not urbanization affect the dietary patterns of a generalist avian predator

Urbanization has reshaped ecosystems and changed natural processes, driving an intense transformation of biomes, biotic community composition and diversity. Despite the growing interest in studying urban ecology over the last decades, the consequences of these changes on species occupying these ecosystems are not yet fully understood. Trophic generalism and tolerance to human disturbance have been proposed as two key traits in the colonization of urban environments. However, most studies focused on species' average traits, paying less attention to the potential role of inter-individual variability. Here, we examined diet specialization in urban and rural breeding pairs, as well as its relationship with individual behaviour and intraspecific competition, using the burrowing owl as a study model. Our results show that both urban and rural breeding pairs behaved as trophic specialists. The diet of burrowing owl breeding pairs followed a gradient from coleopteran- to micromammal-dominated, which is related to individual behaviour (bolder individuals consuming more coleopterans than shyer ones). Besides, pairs distant from others showed a more diverse diet than those experiencing higher levels of intraspecific competition. Models fitted separately for each habitat showed that the proportion of micromammals in the diet of urban breeding pairs was related to their behavior, while the diet of rural pairs was not affected by individual behavior but by intraspecific competition. However, despite the strong selection of tame and more explorative individuals in urban environments and the higher density they reach in this habitat type, they did not differ in their degree of diet specialization from rural conspecifics. Although it would be necessary to evaluate prey availability on a small scale, our results suggest that burrowing owl breeding pairs behave as specialists, despite the generalist character of the species, and that this specialization is not affected by the occupation of urban environments but to individual behaviour and intraspecific competition.

Individual environmental niches in mobile organisms

Individual variation is increasingly recognized as a central component of ecological processes, but its role in structuring environmental niche associations remains largely unknown. Species' responses to environmental conditions are ultimately determined by the niches of single individuals, yet environmental associations are typically captured only at the level of species. Here, we develop scenarios for how individual variation may combine to define the compound environmental niche of populations, use extensive movement data to document individual environmental niche variation, test associated hypotheses of niche configuration, and examine the consistency of individual niches over time. For 45 individual white storks (Ciconia ciconia; 116 individual-year combinations), we uncover high variability in individual environmental associations, consistency of individual niches over time, and moderate to strong niche specialization. Within populations, environmental niches follow a nested pattern, with individuals arranged along a specialist-to-generalist gradient. These results reject common assumptions of individual niche equivalency among conspecifics, as well as the separation of individual niches into disparate parts of environmental space. These findings underscore the need for a more thorough consideration of individualistic environmental responses in global change research.

The trade-offs of foraging at landfills: Landfill use enhances hatching success but decrease the juvenile survival of their offspring on white storks (Ciconia ciconia)

During the last decades, landfills have become a valuable food source for wildlife, being in some cases determinants of large avian population increases. Superabundant food resources at landfills can increase reproductive and/or survival parameters; however, negative effects such as intoxication, plastic ingestion, skeletal deformities, unbalanced oxidative stress, and other health problems have also been reported. White stork (Ciconia ciconia) commonly benefits from landfill resources. Here, we evaluate potential landfill effects on demographic parameters (reproduction and offspring survival) at the individual level in a single population. Our results show that a more intense use of landfills by breeders has a positive effect on hatching success but a negative effect on juvenile survival probability after emancipation, at least during the first year of life. High amount of food and proximity to landfill may explain their beneficial effect on reproductive parameters. On the other hand, poor quality food, pollutants, and pathogens acquired during early development from a diet based on refuse may be responsible for reduced future survival probability. Consequently, both positive and negative effects were detected, being foraging at landfills at low to medium levels the better strategy. Although our study shows that intense foraging on rubbish can imply both costs and benefits at an individual level, the benefits of superabundant food provisioning observed at population level by other studies cannot be ignored. Management actions should be designed to improve natural food resources, reduce non-natural mortality and/or human disturbances to guarantee the species viability under current European Union regulations designed to ban open-air landfills in a near future.

Weighted individual-resource networks in prey-predator systems: the role of prey availability on the emergence of modular structures

Ecological networks, usually depicting interactions among species, have been recently down-scaled to the individual level, permitting description of patterns of inter-individual resource variation that are usually hindered at the species level. Optimal diet theory (ODT) models, applied to prey-predator systems, predict different patterns of nestedness and modularity in the network, depending on the available resources and intra-specific competition. The effect of resource availability on the emergence of networks structures, and ODT framework, has not yet fully been clarified. Here, we analyzed the structural patterns of individual-resource networks in 3 species of Mediterranean salamanders, in relation to changes in prey availability. We used weighted individual-resource network metrics to interpret the observed patterns, according to 3 ODT models. We found significant nestedness recurring in our study system, indicating that both selective and opportunistic individuals occur in the same population. Prey diversity, rather than abundance, was apparently related to inter-individual resource variation and promoted the emergence of significant modularity within all networks. The observed patterns of nestedness and modularity, together with the variation in resource diversity and intra-specific competition, are in agreement with the distinct preferences model of ODT. These findings suggest that in the focal prey-predator systems, individuals were able to perceive changes in prey diversity and to exploit in different ways the variations in composition of available resources, shifting their diet assembly rules accordingly. Our findings also confirm that the use of weighted individual-resource networks, in prey-predator systems, allows to disclose dynamics that are masked at the species or population level.

Vultures and Livestock: The Where, When, and Why of Visits to Farms

Recent changes in European legislation have legalized the abandonment of carcasses around livestock farms, but our understanding of how vultures exploit these semi-predictable food sources is still very limited. For filling this gap, we determine the individual and ecological drivers influencing vulture visits to farms. We assessed the effects of individual characteristics of both birds and farms on the frequency of vultures' visits to livestock facilities using data collected from 45 GPS-tagged Egyptian Vultures (Neophron percnopterus) and 318 farms (>94% of livestock) on Fuerteventura Island, Spain. Farms were more visited during the vultures' breeding season. Farms located closer to highly predictable feeding places (i.e., vulture restaurants and garbage dumps) or with more available feeding resources were visited by more vultures, whereas those located close to roads and vultures' breeding territories received fewer visits. Younger territorial birds visited a farm more frequently than older territorial ones, whereas older non-territorial individuals concentrated those visits on farms closer to their activity core areas compared with younger ones. Our findings indicate that visits to farms were determined by their spatial distribution in relation to the age-specific birds' activity centers, the availability of carcasses, seasonality, and individual characteristics of vultures. These interacting factors should be considered in vulture conservation, avoiding very general solutions that ignore population structure.

Winter movement patterns of a globally endangered avian scavenger in south-western Europe

Partial migration, whereby some individuals migrate and some do not, is relatively common and widespread among animals. Switching between migration tactics (from migratory to resident or vice versa) occurs at individual and population levels. Here, we describe for the first time the movement ecology of the largest wintering population of Egyptian Vultures (Neophron percnopterus) in south-west Europe. We combined field surveys and GPS tracking data from December to February during four wintering seasons (2014–2018). The wintering population consisted on average of 85 individuals (range 58–121; 76% adults and 24% subadults). Individuals were counted at five different roosting sites located near farms, unauthorized carcass deposition sites and authorized carcass deposition sites. Our results show that vultures tend to remain close to the roosting site. Moreover, we observed that females exhibited smaller home range sizes than males, which suggests a possible differential use of food sources. Overall, birds relied more on farms than other available food resources, particularly subadult individuals which exploited more intensively these sites. Our results showed that Egyptian Vultures congregate in significant numbers at specific sites throughout the winter period in south-west Spain and that these roosting and feeding sites should be given some level of legal protection and regular monitoring. Furthermore, predictable food sources might be driving the apparent increase in the non-migratory population of Egyptian Vultures, as observed in other avian species which are also changing their migratory behavior.

A protective nesting association with native species counteracts biotic resistance for the spread of an invasive parakeet from urban into rural habitats

Background

Non-native species are often introduced in cities, where they take advantage of microclimatic conditions, resources provided by humans, and competitor/predator release to establish and proliferate. However, native communities in the surrounding rural or natural areas usually halt their spread through biotic resistance, mainly via top-down regulative processes (predation pressure). Here, we show an unusual commensal interaction between exotic and native bird species that favours the spread of the former from urban to rural habitats.

Results

We show how Monk parakeets Myiopsitta monachus, an invasive species often introduced in cities worldwide, associated for breeding with a much larger, native species (the white stork Ciconia ciconia) to reduce predation risk in central Spain, thus allowing their colonization of rural areas. Parakeets selected stork nests close to conspecifics and where breeding raptors were less abundant. Parakeets always flushed when raptors approached their nests when breeding alone, but stayed at their nests when breeding in association with storks. Moreover, when storks abandoned a nest, parakeets abandoned it in the following year, suggesting that storks actually confer protection against predators.

Conclusions

Our results show how a protective-nesting association between invasive and native species can counteract biotic resistance to allow the spread of an invasive species across non-urban habitats, where they may become crop pests. Monk parakeet populations are now growing exponentially in several cities in several Mediterranean countries, where they coexist with white storks. Therefore, management plans should consider this risk of spread into rural areas and favour native predators as potential biological controllers.

Determination of nest occupation and breeding effect of the white stork by human-mediated landscape in Western Poland

Choosing an appropriate nest site is essential for successful breeding. Changes in land use cause populations of many species to decline although some species adapt to anthropogenic changes. The white stork Ciconia ciconia commonly uses artificial nest sites. Recently, white storks from Western Europe have been using landfills as feeding sites; the beginnings of this process are being observed in Central-Eastern Europe. The study aimed to determine factors influencing the probability of nest occupation and breeding effect in a Central-Eastern European population of white storks. We used long-term data from Western Poland on breeding effect, nest occupation, the structure supporting the nest, the proximity of the nearest landfills, landfill area, and land cover. The probability of nest occupation was significantly dependent on habitat quality (based on the share of the preferred type of land cover), the structure supporting the nest, and landfill proximity within a specific year. The breeding effect was influenced by habitat quality and nesting structure. We demonstrate that the type of nesting structure is an important factor influencing both the probability of nest reoccupation and breeding effect. However, the significance of landfills appears to be growing, and in recent years, storks prefer occupying nests closer to landfills, which may have significant consequences for the population of the white stork.

"Closer-to-home" strategy benefits juvenile survival in a long-distance migratory bird

Human-induced changes in the climate and environment that occur at an unprecedented speed are challenging the existence of migratory species. Faced with these new challenges, species with diverse and flexible migratory behaviors may suffer less from population decline, as they may be better at responding to these changes by altering their migratory behavior. At the individual level, variations in migratory behavior may lead to differences in fitness and subsequently influence the population's demographic dynamics. Using lifetime GPS bio-logging data from 169 white storks (Ciconia ciconia), we explore whether the recently shortened migration distance of storks affects their survival during different stages of their juvenile life. We also explore how other variations in migratory decisions (i.e., time, destination), movement activity (measured using overall body dynamic acceleration), and early life conditions influence juvenile survival. We observed that their first autumn migration was the riskiest period for juvenile white storks. Individuals that migrated shorter distances and fledged earlier experienced lower mortality risks. In addition, higher movement activity and overwintering "closer-to-home" (with 84.21% of the tracked individuals stayed Europe or North Africa) were associated with higher survival. Our study shows how avian migrants can change life history decisions over only a few decades, and thus it helps us to understand and predict how migrants respond to the rapidly changing world.

Estimating age-dependent survival when juveniles resemble females: Invasive ring-necked parakeets as an example

Many species only show sexual dimorphism at the age of maturity, such that juveniles typically resemble females. Under these circumstances, estimating accurate age-specific demographic parameters is challenging. Here, we propose a multievent model parameterization able to estimate age-dependent survival using capture-recapture data with uncertainty in age and sex assignment of individuals. We illustrate this modeling approach with capture-recapture data from the ring-necked parakeet Psittacula krameri. We analyzed capture, recapture, and resighting data (439 recaptures/resightings) of 156 ring-necked parakeets tagged with neck collars in Barcelona city from 2003 to 2016 to estimate the juvenile and adult survival rate. Our models successfully estimated the survival probabilities of the different age classes considered. Survival probability was similar between adults (0.83, 95% CI = 0.77-0.87) and juveniles during their second (0.79, 95% CI = 0.58-0.87) and third winter (0.83, 95% CI = 0.65-0.88). The youngest juveniles (1st winter) showed a slightly lower survival (0.57, 95% CI = 0.37-0.79). Among adults, females showed a slightly higher survival than males (0.87, 95% CI = 0.78-0.93; and 0.80, 95% CI = 0.73-0.86, respectively). These high survival figures predict high population persistence in this species and urge management policies. The analysis also stresses the usefulness of multievent models to estimate juvenile survival when age cannot be fully ascertained.

Food predictability and social status drive individual resource specializations in a territorial vulture

Despite increasing work detailing the presence of foraging specializations across a range of taxa, limited attention so far has been given to the role of spatiotemporal variation in food predictability in shaping individual resource selection. Here, we studied the exploitation of human-provided carrion resources differing in predictability by Canarian Egyptian vultures (Neophron percnopterus majorensis). We focussed specifically on the role of individual characteristics and spatial constraints in shaping patterns of resource use. Using high-resolution GPS data obtained from 45 vultures tracked for 1 year, we show that individual vultures were repeatable in both their monthly use of predictable and semi-predicable resources (feeding station vs. farms) and monthly levels of mobility (home range size and flight activity). However, individual foraging activities were simultaneously characterized by a high degree of (temporal) plasticity in the use of the feeding station in specific months. Individual rank within dominance hierarchy revealed sex-dependent effects of social status on resource preference in breeding adults, illustrating the potential complex social mechanisms underpinning status-dependent resource use patterns. Our results show that predictable food at feeding stations may lead to broad-scale patterns of resource partitioning and affect both the foraging and social dynamics within local vulture populations.

Predator arrival elicits differential dispersal, change in age structure and reproductive performance in a prey population

Predators are an important ecological and evolutionary force shaping prey population dynamics. Ecologists have extensively assessed the lethal effects of invasive predators on prey populations. However, the role of non-lethal effects, such as physiological stress or behavioural responses like dispersal, has been comparatively overlooked and their potential population effects remain obscure. Over the last 23 years, we developed a mark-recapture program for the Audouin's gull and an intensive carnivore monitoring program to assess how the appearance and invasion of the study site by carnivores affects population dynamics. We evaluate changes in turnover of discrete breeding patches within the colony, age structure and breeding performance. Once carnivores entered the colony, the number of occupied patches increased, indicating a higher patch turnover. Breeders responded by moving to areas less accessible to carnivores. More importantly, the presence of carnivores caused differential (and density-independent) breeding dispersal: experienced, better-performing breeders were more likely to leave the colony than younger breeders. This differential dispersal modified the age structure and reduced the reproductive performance of the population. Our results confirm the importance experience in the study of populations. The role of differential dispersal for animal population dynamics might be more important than previously thought, especially under scenarios of global change.

Assessment of DNA damage in Ardea cinerea and Ciconia ciconia: A 5-year study in Portuguese birds retrieved for rehabilitation

Over the past decades, the presence of micronucleated blood cells has been used to detect genotoxic effects of xenobiotics in fish, amphibians and birds. This study assessed the frequency of micronuclei (MN) and other nuclear abnormalities in erythrocytes of individuals of Ardea cinerea and Ciconia ciconia retrieved for rehabilitation in order to evaluate the influence of age, temporal and spatial factors on the occurrence of DNA damage in Portuguese wild birds. Blood smears from 65 birds with different life-history backgrounds (e.g. geographic origin, age) were collected between 2007 and 2011 and the frequency of erythrocyte nuclear abnormalities (ENAs) was analysed. Differences in DNA damage between ages were observed to occur in C. ciconia, with chicks displaying significantly higher frequencies of ENAs (both when looking at total ENAs or only MN frequency) than juveniles and adults. Additionally, significant differences in ENAs frequencies were observed between different years and geographic origins, whereas MN frequency alone did not show significant alterations concerning spatial and temporal variations. These results suggest that the assessment of ENAs rather than MN frequency alone may be a useful and valuable tool to complement the evaluation of DNA damage in populations of birds, as prompted by individual life-history traits and environmental factors.

Sex- and age-dependent patterns of survival and breeding success in a long-lived endangered avian scavenger

In long-lived species, the age-, stage- and/or sex-dependent patterns of survival and reproduction determine the evolution of life history strategies, the shape of the reproductive value, and ultimately population dynamics. We evaluate the combined effects of age and sex in recruitment, breeder survival and breeding success of the globally endangered Egyptian vulture (Neophron percnopterus), using 31-years of exhaustive data on marked individuals in Spain. Mean age of first reproduction was 7-yrs for both sexes, but females showed an earlier median and a larger variance than males. We found an age-related improvement in breeding success at the population level responding to the selective appearance and disappearance of phenotypes of different quality but unrelated to within-individual aging effects. Old males (≥8 yrs) showed a higher survival than both young males (≤7 yrs) and females, these later in turn not showing aging effects. Evolutionary trade-offs between age of recruitment and fitness (probably related to costs of territory acquisition and defense) as well as human-related mortality may explain these findings. Sex- and age-related differences in foraging strategies and susceptibility to toxics could be behind the relatively low survival of females and young males, adding a new concern for the conservation of this endangered species.

Hatching asynchrony vs. foraging efficiency: the response to food availability in specialist vs. generalist tit species

Breeding mistiming is increasingly frequent in several ecosystems in the face of current climate change. Species belonging to higher trophic levels must employ mechanisms to reduce it. One of these mechanisms is hatching asynchrony, with the eggs in a clutch hatching over a period of several days. Some authors have suggested it to be adaptive when food is unpredictable. However, these birds can also suffer associated costs. We tested whether a species with higher foraging efficiency avoid hatching asynchrony compared to its sister species. We studied hatching asynchrony and nestling provisioning in relation to food availability in sympatric populations of blue and great tits. For the first time, we show that sister species respond to food availability with different strategies. Blue tit feeding rates readily responded to the abundance of their main prey, and also reduced the impact of nestling size hierarchy on mean nestling weight, consequently increasing fledging rate. Our results suggest that levels of hatching asynchrony seem to be influenced by species-specific life history traits, as generalist foragers rely less on it. They also highlight the importance of multi-species approaches when studying the response of organisms to environmental unpredictability.