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Mokhtari M, Khoshbakht S, Ziyaei K, Akbari ME, Moravveji SS. New classifications for quantum bioinformatics: Q-bioinformatics, QCt-bioinformatics, QCg-bioinformatics, and QCr-bioinformatics. Brief Bioinform 2024; 25:bbae074. [PMID: 38446742 PMCID: PMC10939336 DOI: 10.1093/bib/bbae074] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Revised: 11/14/2023] [Accepted: 02/07/2021] [Indexed: 03/08/2024] Open
Abstract
Bioinformatics has revolutionized biology and medicine by using computational methods to analyze and interpret biological data. Quantum mechanics has recently emerged as a promising tool for the analysis of biological systems, leading to the development of quantum bioinformatics. This new field employs the principles of quantum mechanics, quantum algorithms, and quantum computing to solve complex problems in molecular biology, drug design, and protein folding. However, the intersection of bioinformatics, biology, and quantum mechanics presents unique challenges. One significant challenge is the possibility of confusion among scientists between quantum bioinformatics and quantum biology, which have similar goals and concepts. Additionally, the diverse calculations in each field make it difficult to establish boundaries and identify purely quantum effects from other factors that may affect biological processes. This review provides an overview of the concepts of quantum biology and quantum mechanics and their intersection in quantum bioinformatics. We examine the challenges and unique features of this field and propose a classification of quantum bioinformatics to promote interdisciplinary collaboration and accelerate progress. By unlocking the full potential of quantum bioinformatics, this review aims to contribute to our understanding of quantum mechanics in biological systems.
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Affiliation(s)
- Majid Mokhtari
- Department of Bioinformatics, Kish International Campus, University of Tehran, Kish Island, Iran
| | - Samane Khoshbakht
- Department of Bioinformatics, Kish International Campus, University of Tehran, Kish Island, Iran
- Duke Molecular Physiology Institute, Duke University School of Medicine-Cardiology, Durham, NC, 27701, USA
| | - Kobra Ziyaei
- Department of Fisheries, Faculty of Natural Resources, University of Tehran, Karaj, Iran
| | | | - Sayyed Sajjad Moravveji
- Department of Bioinformatics, Kish International Campus, University of Tehran, Kish Island, Iran
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2
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Kyriazos T, Poga M. Quantum concepts in Psychology: Exploring the interplay of physics and the human psyche. Biosystems 2024; 235:105070. [PMID: 37939870 DOI: 10.1016/j.biosystems.2023.105070] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2023] [Revised: 11/01/2023] [Accepted: 11/01/2023] [Indexed: 11/10/2023]
Abstract
This paper delves into the innovative intersection of quantum mechanics and psychology, examining the potential of quantum principles to provide fresh insights into human emotions, cognition, and consciousness. Drawing parallels between quantum phenomena such as superposition, entanglement, tunneling, decoherence and their psychological counterparts, we present a quantum-psychological model that reimagines emotional states, cognitive breakthroughs, interpersonal relationships, and the nature of consciousness. The study uses computational models and simulations to explore this interdisciplinary fusion's implications and applications, highlighting its potential benefits and inherent challenges. While quantum concepts offer a rich metaphorical lens to view the intricacies of human experience, it is essential to approach this nascent framework with enthusiasm and skepticism. Rigorous empirical validation is paramount to realize its full potential in research and therapeutic contexts. This exploration stands as a promising thread in the tapestry of intellectual history, suggesting a deeper understanding of the human psyche through the lens of quantum mechanics.
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Affiliation(s)
| | - Mary Poga
- Independent Researcher, Athens, Greece
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3
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Neuroanatomy of the Will. NEUROSCI 2022. [DOI: 10.3390/neurosci3040044] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022] Open
Abstract
Questions regarding the nature and source of consciousness and individual agency to make decisions have enormous practical implications that include human health and wellbeing, social policy, and economics. Ethical issues involving the ability for patients to make conscious, informed choices, such as in cases of dementia or coma, abound, and the health implications of individual choice on public wellbeing are becoming increasingly important as population densities increase. Furthermore, the use of animals for drug testing presents moral dilemmas related to our concepts of consciousness, pain, and consent. While philosophers have long debated aspects of consciousness, the means to scientifically address specific questions regarding regional and cellular functions of the brain are constantly emerging, as are new theories of physical laws and particle interactions which allow for the formation of new hypotheses of the source of consciousness. These emerging capabilities and hypotheses are increasingly able to be subjected to methodological scrutiny by the scientific community. To facilitate open discussion and advances in investigations regarding the nature of consciousness, this Topical Collection is intended to provide a peer-reviewed space to discuss or propose falsifiable hypotheses of consciousness in a full range of systems, using methods across disciplines of biology, physics, computer science, and philosophy of science that can inform such a discussion, while emphasizing the role that our conception of consciousness has on human health, society, and policy.
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Różyk-Myrta A, Brodziak A, Muc-Wierzgoń M. Neural Circuits, Microtubule Processing, Brain's Electromagnetic Field-Components of Self-Awareness. Brain Sci 2021; 11:984. [PMID: 34439603 PMCID: PMC8393322 DOI: 10.3390/brainsci11080984] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2021] [Revised: 07/18/2021] [Accepted: 07/21/2021] [Indexed: 11/20/2022] Open
Abstract
The known theories discussing the essence of consciousness have been recently updated. This prompts an attempt to integrate these explanations concerning several distinct components of the consciousness phenomenon such as the ego, and qualia perceptions. Therefore, it is useful to consider the latest publications on the 'Orch OR' and 'cemi' theories, which assume that quantum processing occurs in microtubules and that the brain's endogenous electromagnetic field is important. The authors combine these explanations with their own theory describing the neural circuits realizing imagery. They try to present such an interdisciplinary, integrated theoretical model in a manner intuitively understandable to people with a typical medical education. In order to do this, they even refer to intuitively understandable metaphors. The authors maintain that an effective comprehension of consciousness is important for health care professionals because its disorders are frequent medical symptoms in emergencies, during general anesthesia and in the course of cognitive disorders in elderly people. The authors emphasize the current possibilities to verify these theses regarding the essence of consciousness thanks to the development of functional brain imaging methods-magnetoencephalography, transcranial magnetic stimulation-as well as clinical studies on the modification of perceptions and feelings by such techniques as mindfulness and the use of certain psychoactive substances, especially among people with self-awareness and identity disorders.
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Affiliation(s)
- Alicja Różyk-Myrta
- Faculty of Medical Sciences, University of Applied Sciences in Nysa, 48-300 Nysa, Poland; (A.B.); (M.M.-W.)
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Bajic V, Misic N, Stankovic I, Zaric B, Perry G. Alzheimer's and Consciousness: How Much Subjectivity Is Objective? Neurosci Insights 2021; 16:26331055211033869. [PMID: 34350401 PMCID: PMC8295942 DOI: 10.1177/26331055211033869] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2021] [Accepted: 07/02/2021] [Indexed: 01/03/2023] Open
Abstract
Does Alzheimer Disease show a decline in cognitive functions that relate to the awareness of external reality? In this paper, we will propose a perspective that patients with increasing symptoms of AD show a change in the awareness of subjective versus objective representative axis of reality thus consequently move to a more internal like perception of reality. This paradigm shift suggests that new insights into the dynamicity of the conscious representation of reality in the AD brain may give us new clues to the very early signs of memory and self-awareness impairment that originates from, in our view the microtubules. Dialog between Adso and William, in Umberto Eco's The Name of the Rose, Third Day: Vespers. "But how does it happen," I said with admiration, "that you were able to solve the mystery of the library looking at it from the outside, and you were unable to solve it when you were inside?" "Thus, God knows the world, because He conceived it in His mind, as if it was from the outside, before it was created, and we do not know its rule, because we live inside it, having found it already made."
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Affiliation(s)
- Vladan Bajic
- Department of Radiobiology and
Molecular Genetics, Vinca Institute, University of Belgrade, Belgrade, Serbia
| | | | - Ivana Stankovic
- Institute of Chemistry, Technology and
Metallurgy, University of Belgrade, Belgrade, Serbia
| | - Bozidarka Zaric
- Department of Radiobiology and
Molecular Genetics, Vinca Institute, University of Belgrade, Belgrade, Serbia
| | - George Perry
- Department of Biology, The University
of Texas at San Antonio, San Antonio, TX, USA
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Idris Z, Zakaria Z, Yee AS, Fitzrol DN, Ghani ARI, Abdullah JM, Wan Hassan WMN, Hassan MH, Manaf AA, Chong Heng RO. Quantum and Electromagnetic Fields in Our Universe and Brain: A New Perspective to Comprehend Brain Function. Brain Sci 2021; 11:brainsci11050558. [PMID: 33925002 PMCID: PMC8146693 DOI: 10.3390/brainsci11050558] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2021] [Revised: 04/22/2021] [Accepted: 04/26/2021] [Indexed: 11/16/2022] Open
Abstract
The concept of wholeness or oneness refers to not only humans, but also all of creation. Similarly, consciousness may not wholly exist inside the human brain. One consciousness could permeate the whole universe as limitless energy; thus, human consciousness can be regarded as limited or partial in character. According to the limited consciousness concept, humans perceive projected waves or wave-vortices as a waveless item. Therefore, human limited consciousness collapses the wave function or energy of particles; accordingly, we are only able to perceive them as particles. With this “limited concept”, the wave-vortex or wave movement comes into review, which also seems to have a limited concept, i.e., the limited projected wave concept. Notably, this wave-vortex seems to embrace photonic light, as well as electricity and anything in between them, which gives a sense of dimension to our brain. These elements of limited projected wave-vortex and limitless energy (consciousness) may coexist inside our brain as electric (directional pilot wave) and quantum (diffused oneness of waves) brainwaves, respectively, with both of them giving rise to one brain field. Abnormality in either the electrical or the quantum field or their fusion may lead to abnormal brain function.
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Affiliation(s)
- Zamzuri Idris
- Department of Neurosciences, School of Medical Sciences, Universiti Sains Malaysia, Kubang Kerian 16150, Malaysia; (Z.Z.); (A.S.Y.); (D.N.F.); (A.R.I.G.); (J.M.A.)
- Brain and Behaviour Cluster (BBC), School of Medical Sciences, Universiti Sains Malaysia, Kubang Kerian 16150, Malaysia
- Hospital Universiti Sains Malaysia (HUSM), Universiti Sains Malaysia, Kubang Kerian 16150, Malaysia; (W.M.N.W.H.); (M.H.H.)
- Correspondence: ; Tel.: +60-9-767-6299; Fax: +60-9-764-8613
| | - Zaitun Zakaria
- Department of Neurosciences, School of Medical Sciences, Universiti Sains Malaysia, Kubang Kerian 16150, Malaysia; (Z.Z.); (A.S.Y.); (D.N.F.); (A.R.I.G.); (J.M.A.)
- Brain and Behaviour Cluster (BBC), School of Medical Sciences, Universiti Sains Malaysia, Kubang Kerian 16150, Malaysia
- Hospital Universiti Sains Malaysia (HUSM), Universiti Sains Malaysia, Kubang Kerian 16150, Malaysia; (W.M.N.W.H.); (M.H.H.)
| | - Ang Song Yee
- Department of Neurosciences, School of Medical Sciences, Universiti Sains Malaysia, Kubang Kerian 16150, Malaysia; (Z.Z.); (A.S.Y.); (D.N.F.); (A.R.I.G.); (J.M.A.)
- Brain and Behaviour Cluster (BBC), School of Medical Sciences, Universiti Sains Malaysia, Kubang Kerian 16150, Malaysia
- Hospital Universiti Sains Malaysia (HUSM), Universiti Sains Malaysia, Kubang Kerian 16150, Malaysia; (W.M.N.W.H.); (M.H.H.)
| | - Diana Noma Fitzrol
- Department of Neurosciences, School of Medical Sciences, Universiti Sains Malaysia, Kubang Kerian 16150, Malaysia; (Z.Z.); (A.S.Y.); (D.N.F.); (A.R.I.G.); (J.M.A.)
- Brain and Behaviour Cluster (BBC), School of Medical Sciences, Universiti Sains Malaysia, Kubang Kerian 16150, Malaysia
- Hospital Universiti Sains Malaysia (HUSM), Universiti Sains Malaysia, Kubang Kerian 16150, Malaysia; (W.M.N.W.H.); (M.H.H.)
| | - Abdul Rahman Izaini Ghani
- Department of Neurosciences, School of Medical Sciences, Universiti Sains Malaysia, Kubang Kerian 16150, Malaysia; (Z.Z.); (A.S.Y.); (D.N.F.); (A.R.I.G.); (J.M.A.)
- Brain and Behaviour Cluster (BBC), School of Medical Sciences, Universiti Sains Malaysia, Kubang Kerian 16150, Malaysia
- Hospital Universiti Sains Malaysia (HUSM), Universiti Sains Malaysia, Kubang Kerian 16150, Malaysia; (W.M.N.W.H.); (M.H.H.)
| | - Jafri Malin Abdullah
- Department of Neurosciences, School of Medical Sciences, Universiti Sains Malaysia, Kubang Kerian 16150, Malaysia; (Z.Z.); (A.S.Y.); (D.N.F.); (A.R.I.G.); (J.M.A.)
- Brain and Behaviour Cluster (BBC), School of Medical Sciences, Universiti Sains Malaysia, Kubang Kerian 16150, Malaysia
- Hospital Universiti Sains Malaysia (HUSM), Universiti Sains Malaysia, Kubang Kerian 16150, Malaysia; (W.M.N.W.H.); (M.H.H.)
| | - Wan Mohd Nazaruddin Wan Hassan
- Hospital Universiti Sains Malaysia (HUSM), Universiti Sains Malaysia, Kubang Kerian 16150, Malaysia; (W.M.N.W.H.); (M.H.H.)
- Department of Anaesthesiology, School of Medical Sciences, Universiti Sains Malaysia, Kubang Kerian 16150, Malaysia
| | - Mohd Hasyizan Hassan
- Hospital Universiti Sains Malaysia (HUSM), Universiti Sains Malaysia, Kubang Kerian 16150, Malaysia; (W.M.N.W.H.); (M.H.H.)
- Department of Anaesthesiology, School of Medical Sciences, Universiti Sains Malaysia, Kubang Kerian 16150, Malaysia
| | - Asrulnizam Abdul Manaf
- Collaborative Microelectronic Design Excellence Center (CEDEC), Universiti Sains Malaysia, Bayan Lepas 11900, Malaysia;
| | - Raymond Ooi Chong Heng
- Department of Physics, Faculty of Science, University of Malaya, Kuala Lumpur 50603, Malaysia;
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Microsurgical resection of fronto-temporo-insular gliomas in the non-dominant hemisphere, under general anesthesia using adjunct intraoperative MRI and no cortical and subcortical mapping: a series of 20 consecutive patients. Sci Rep 2021; 11:6994. [PMID: 33772073 PMCID: PMC7997967 DOI: 10.1038/s41598-021-86165-7] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2020] [Accepted: 02/23/2021] [Indexed: 12/18/2022] Open
Abstract
Fronto-temporo-insular (FTI) gliomas continue to represent a surgical challenge despite numerous technical advances. Some authors advocate for surgery in awake condition even for non-dominant hemisphere FTI, due to risk of sociocognitive impairment. Here, we report outcomes in a series of patients operated using intraoperative magnetic resonance imaging (IoMRI) guided surgery under general anesthesia, using no cortical or subcortical mapping. We evaluated the extent of resection, functional and neuropsychological outcomes after IoMRI guided surgery under general anesthesia of FTI gliomas located in the non-dominant hemisphere. Twenty patients underwent FTI glioma resection using IoMRI in asleep condition. Seventeen tumors were de novo, three were recurrences. Tumor WHO grades were II:12, III:4, IV:4. Patients were evaluated before and after microsurgical resection, clinically, neuropsychologically (i.e., social cognition) and by volumetric MR measures (T1G+ for enhancing tumors, FLAIR for non-enhancing). Fourteen (70%) patients benefited from a second IoMRI. The median age was 33.5 years (range 24–56). Seizure was the inaugural symptom in 71% of patients. The median preoperative volume was 64.5 cm3 (min 9.9, max 211). Fourteen (70%) patients underwent two IoMRI. The final median EOR was 92% (range 69–100). The median postoperative residual tumor volume (RTV) was 4.3 cm3 (range 0–38.2). A vast majority of residual tumors were located in the posterior part of the insula. Early postoperative clinical events (during hospital stay) were three transient left hemiparesis (which lasted less than 48 h) and one prolonged left brachio-facial hemiparesis. Sixty percent of patients were free of any symptom at discharge. The median Karnofsky Performance Score was of 90 both at discharge and at 3 months. No significant neuropsychological impairment was reported, excepting empathy distinction in less than 40% of patients. After surgery, 45% of patients could go back to work. In our experience and using IoMRI as an adjunct, microsurgical resection of non-dominant FTI gliomas under general anesthesia is safe. Final median EOR was 92%, with a vast majority of residual tumors located in the posterior insular part. Patients experienced minor neurological and neuropsychological morbidity. Moreover, neuropsychological evaluation reported a high preservation of sociocognitive abilities. Solely empathy seemed to be impaired in some patients.
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