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Barley AJ, Nieto-Montes de Oca A, Manríquez-Morán NL, Thomson RC. The evolutionary network of whiptail lizards reveals predictable outcomes of hybridization. Science 2022; 377:773-777. [PMID: 35951680 DOI: 10.1126/science.abn1593] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Hybridization between diverging lineages is associated with the generation and loss of species diversity, introgression, adaptation, and changes in reproductive mode, but it is unknown when and why it results in these divergent outcomes. We estimate a comprehensive evolutionary network for the largest group of unisexual vertebrates and use it to understand the evolutionary outcomes of hybridization. Our results show that rates of introgression between species decrease with time since divergence and suggest that species must attain a threshold of evolutionary divergence before hybridization results in transitions to unisexuality. Rates of hybridization also predict genome-wide patterns of genetic diversity in whiptail lizards. These results distinguish among models for hybridization that have not previously been tested and suggest that the evolutionary outcomes can be predictable.
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Affiliation(s)
- Anthony J Barley
- Department of Evolution and Ecology, University of California, Davis, Davis, CA 95616, USA.,School of Life Sciences, University of Hawai'i, Honolulu, HI 96822, USA
| | - Adrián Nieto-Montes de Oca
- Laboratorio de Herpetología and Museo de Zoología Alfonso L. Herrera, Departamento de Biología Evolutiva, Facultad de Ciencias, Universidad Nacional Autónoma de México, Ciudad Universitaria, Alcadía Coyoacán, Ciudad de México, México
| | - Norma L Manríquez-Morán
- Laboratorio de Sistemática Molecular, Centro de Investigaciones Biológicas, Universidad Autónoma del Estado de Hidalgo, Colonia Carboneras, Mineral de la Reforma, Hidalgo, México
| | - Robert C Thomson
- School of Life Sciences, University of Hawai'i, Honolulu, HI 96822, USA
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2
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Raya‐García E, Suazo‐Ortuño I, García‐Andrade AB, Solís‐Guzmán MG, Pérez‐Rodríguez R. Assessing evolutionary history and species boundaries in a polymorphic tropical lizard, the
Aspidoscelis lineattissimus
species complex (Squamata, Teiidae). ZOOL SCR 2022. [DOI: 10.1111/zsc.12549] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Ernesto Raya‐García
- Instituto de Investigaciones sobre los Recursos Naturales Universidad Michoacana de San Nicolás de Hidalgo Morelia Michoacán Mexico
| | - Ireri Suazo‐Ortuño
- Instituto de Investigaciones sobre los Recursos Naturales Universidad Michoacana de San Nicolás de Hidalgo Morelia Michoacán Mexico
| | | | - María Gloria Solís‐Guzmán
- Laboratorio de Biología Acuática, Facultad de Biología Universidad Michoacana de San Nicolás de Hidalgo Morelia Michoacán Mexico
| | - Rodolfo Pérez‐Rodríguez
- Laboratorio de Biología Acuática, Facultad de Biología Universidad Michoacana de San Nicolás de Hidalgo Morelia Michoacán Mexico
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Vergun AA, Girnyk AE, Korchagin VI, Semyenova SK, Arakelyan MS, Danielyan FD, Murphy RW, Ryskov AP. Origin, clonal diversity, and evolution of the parthenogenetic lizard Darevskia unisexualis. BMC Genomics 2020; 21:351. [PMID: 32393253 PMCID: PMC7216553 DOI: 10.1186/s12864-020-6759-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2019] [Accepted: 04/28/2020] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND The hybridization of female D. raddei and male D. valentini gave rise to the parthenogenetic Caucasian rock lizard Darevskia unisexualis. A previously identified genetic polymorphism in the species consisted of one common and two allozyme clones. Analysis of microsatellites and single nucleotide polymorphisms (SNPs) from the three species yields estimates of clonal diversity and tests the hypothesis of a single origin for D. unisexualis. RESULTS Genotyping and sequencing of four microsatellite-containing loci for 109 specimens of D. unisexualis, 17 D. valentini, and 45 D. raddei nairensis identified 12 presumptive clones, including one widespread and 11 rare clones. Most individuals in some localities had a rare clone. Clone-specific alleles in D. unisexualis were compared with those of the parental species. The results inferred a single hybridization event. Post-formation mutations best explain the less common clones. CONCLUSIONS Interspecific analyses identify alleles inherited by D. unisexualis from its bisexual ancestors. SNP analyses fail to reject the hypothesis of a single interspecific origin of D. unisexualis, followed by microsatellite mutations in this initial clone. Microsatellites detect higher clonal diversity in D. unisexualis compared to allozymes and identify the likely origins of clones. Our approach may be applicable to other unisexual species whose origins involve interspecific hybridization.
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Affiliation(s)
- Andrey A Vergun
- Laboratory of Genome Organization, Institute of Gene Biology of the Russian Academy of Sciences, Vavilova Str., 34/5, Moscow, 119334, Russia
- Department of Biochemistry, Molecular Biology and Genetics, Moscow State Pedagogical University, M. Pirogovskaya Str., 1/1, Moscow, 119991, Russia
| | - Anastasiya E Girnyk
- Laboratory of Genome Organization, Institute of Gene Biology of the Russian Academy of Sciences, Vavilova Str., 34/5, Moscow, 119334, Russia
| | - Vitaly I Korchagin
- Laboratory of Genome Organization, Institute of Gene Biology of the Russian Academy of Sciences, Vavilova Str., 34/5, Moscow, 119334, Russia
| | - Seraphima K Semyenova
- Laboratory of Genome Organization, Institute of Gene Biology of the Russian Academy of Sciences, Vavilova Str., 34/5, Moscow, 119334, Russia
| | - Marine S Arakelyan
- Faculty of Biology, Yerevan State University, 1 Alex Manoogian, 0025, Yerevan, Armenia
| | - Felix D Danielyan
- Faculty of Biology, Yerevan State University, 1 Alex Manoogian, 0025, Yerevan, Armenia
| | - Robert W Murphy
- Department of Natural History, Royal Ontario Museum, 100 Queen's Park, Toronto, ON, M5S 2C6, Canada
| | - Alexey P Ryskov
- Laboratory of Genome Organization, Institute of Gene Biology of the Russian Academy of Sciences, Vavilova Str., 34/5, Moscow, 119334, Russia.
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Esquivel‐Ramírez A, Hornung‐Leoni CT, Manríquez‐Morán NL. Morphological variation and sexual dimorphism in the
Aspidoscelis gularis
complex (Squamata: Teiidae) from Mexico. ACTA ZOOL-STOCKHOLM 2020. [DOI: 10.1111/azo.12322] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Anahí Esquivel‐Ramírez
- Centro de Investigaciones Biológicas Universidad Autónoma del Estado de Hidalgo Mineral de la Reforma Hidalgo México
| | - Claudia T. Hornung‐Leoni
- Centro de Investigaciones Biológicas Universidad Autónoma del Estado de Hidalgo Mineral de la Reforma Hidalgo México
| | - Norma L. Manríquez‐Morán
- Centro de Investigaciones Biológicas Universidad Autónoma del Estado de Hidalgo Mineral de la Reforma Hidalgo México
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Brunes TO, da Silva AJ, Marques-Souza S, Rodrigues MT, Pellegrino KC. Not always young: The first vertebrate ancient origin of true parthenogenesis found in an Amazon leaf litter lizard with evidence of mitochondrial haplotypes surfing on the wave of a range expansion. Mol Phylogenet Evol 2019; 135:105-122. [DOI: 10.1016/j.ympev.2019.01.023] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2018] [Revised: 01/23/2019] [Accepted: 01/26/2019] [Indexed: 10/27/2022]
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Morozov-Leonov SY. Hemiclone Diversity in the Hybrid Form Pelophylax esculentus-ridibundus (Amphibia, Ranidae) from the Prypyat, Dnestr, and Southern Boug River Basins. CYTOL GENET+ 2019. [DOI: 10.3103/s0095452719010092] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Multiple interspecific hybridization and microsatellite mutations provide clonal diversity in the parthenogenetic rock lizard Darevskia armeniaca. BMC Genomics 2018; 19:979. [PMID: 30594123 PMCID: PMC6311022 DOI: 10.1186/s12864-018-5359-5] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2018] [Accepted: 12/09/2018] [Indexed: 11/16/2022] Open
Abstract
Background The parthenogenetic Caucasian rock lizard Darevskia armeniaca, like most other parthenogenetic vertebrate species, originated through interspecific hybridization between the closely related sexual Darevskia mixta and Darevskia valentini. Darevskia armeniaca was shown to consist of one widespread allozyme clone and a few rare ones, but notwithstanding the origin of clonal diversity remains unclear. We conduct genomic analysis of D. armeniaca and its parental sexual species using microsatellite and SNP markers to identify the origin of parthenogenetic clonal lineages. Results Four microsatellite-containing loci were genotyped for 111 specimens of D. armeniaca, 17 D. valentini, and four D. mixta. For these species, a total of 47 alleles were isolated and sequenced. Analysis of the data revealed 13 genotypes or presumptive clones in parthenogenetic D. armeniaca, including one widespread clone, two apparently geographically restricted clones, and ten rare clones. Comparisons of genotype-specific markers in D. armeniaca with those of its parental species revealed three founder-events including a common and two rare clones. All other clones appeared to have originated via post-formation microsatellite mutations in the course of evolutionary history of D. armeniaca. Conclusion Our new approach to microsatellite genotyping reveals allele-specific microsatellite and SNP markers for each locus studied. Interspecies comparison of these markers identifies alleles inherited by parthenospecies from parental species, and provides new information on origin and evolution of clonal diversity in D. armeniaca. SNP analyses reveal at least three interspecific origins of D. armeniaca, and microsatellite mutations in these initial clones give rise to new clones. Thus, we first establish multiple origins of D. armeniaca. Our study identifies the most effective molecular markers for elucidating the origins of clonal diversity in other unisexual species that arose via interspecific hybridization. Electronic supplementary material The online version of this article (10.1186/s12864-018-5359-5) contains supplementary material, which is available to authorized users.
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Ryskov AP, Osipov FA, Omelchenko AV, Semyenova SK, Girnyk AE, Korchagin VI, Vergun AA, Murphy RW. The origin of multiple clones in the parthenogenetic lizard species Darevskia rostombekowi. PLoS One 2017; 12:e0185161. [PMID: 28931071 PMCID: PMC5607197 DOI: 10.1371/journal.pone.0185161] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2017] [Accepted: 09/07/2017] [Indexed: 11/19/2022] Open
Abstract
The all-female Caucasian rock lizard Darevskia rostombekowi and other unisexual species of this genus reproduce normally via true parthenogenesis. Typically, diploid parthenogenetic reptiles exhibit some amount of clonal diversity. However, allozyme data from D. rostombekowi have suggested that this species consists of a single clone. Herein, we test this hypothesis by evaluating variation at three variable microsatellite loci for 42 specimens of D. rostombekowi from four populations in Armenia. Analyses based on single nucleotide polymorphisms of each locus reveal five genotypes or presumptive clones in this species. All individuals are heterozygous at the loci. The major clone occurs in 24 individuals and involves three populations. Four rare clones involve one or several individuals from one or two populations. Most variation owes to parent-specific single nucleotide polymorphisms, which occur as heterozygotes. This result fails to reject the hypothesis of a single hybridization founder event that resulted in the initial formation of one major clone. The other clones appear to have originated via post-formation microsatellite mutations of the major clone.
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Affiliation(s)
- Alexey P. Ryskov
- Laboratory of Genome Organization, Institute of Gene Biology of the Russian Academy of Sciences, Moscow, Russia
| | - Fedor A. Osipov
- Laboratory of Genome Organization, Institute of Gene Biology of the Russian Academy of Sciences, Moscow, Russia
- Department of Biochemistry, Molecular biology and Genetics, Moscow State Pedagogical University, Moscow, Russia
| | - Andrey V. Omelchenko
- Group of Bioinformatics and Modeling Biological Process, Severtsov Institute of Ecology and Evolution of the Russian Academy of Sciences, Moscow, Russia
| | - Seraphima K. Semyenova
- Laboratory of Genome Organization, Institute of Gene Biology of the Russian Academy of Sciences, Moscow, Russia
| | - Anastasiya E. Girnyk
- Laboratory of Genome Organization, Institute of Gene Biology of the Russian Academy of Sciences, Moscow, Russia
| | - Vitaly I. Korchagin
- Laboratory of Genome Organization, Institute of Gene Biology of the Russian Academy of Sciences, Moscow, Russia
| | - Andrey A. Vergun
- Laboratory of Genome Organization, Institute of Gene Biology of the Russian Academy of Sciences, Moscow, Russia
- Department of Biochemistry, Molecular biology and Genetics, Moscow State Pedagogical University, Moscow, Russia
| | - Robert W. Murphy
- Department of Natural History, Royal Ontario Museum, Toronto, Ontario, Canada
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Girnyk AE, Vergun AA, Omelchenko AV, Petrosyan VG, Korchagin VI, Ryskov AP. Molecular and genetic characterization of the allelic variants of Du215, Du281, Du323, and Du47G microsatellite loci in parthenogenetic lizard Darevskia armeniaca (Lacertidae). RUSS J GENET+ 2017. [DOI: 10.1134/s1022795417040068] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Charruau P, Díaz de la Vega Pérez AH, de la Cruz FRM. Reptiles of Banco Chinchorro: Updated List, Life History Data, and Conservation. SOUTHWEST NAT 2016. [DOI: 10.1894/0038-4909-60.4.299] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Griebel J, Gießler S, Yin M, Wolinska J. Parental and hybrid Daphnia
from the D. longispina
complex: long-term dynamics in genetic structure and significance of overwintering modes. J Evol Biol 2016; 29:810-23. [DOI: 10.1111/jeb.12828] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2015] [Revised: 12/18/2015] [Accepted: 01/10/2016] [Indexed: 12/22/2022]
Affiliation(s)
- J. Griebel
- Department of Ecosystem Research; Leibniz-Institute of Freshwater Ecology and Inland Fisheries; Berlin Germany
- Department of Biology II; Ludwig Maximilian University Munich; Munich Germany
| | - S. Gießler
- Department of Biology II; Ludwig Maximilian University Munich; Munich Germany
| | - M. Yin
- MOE Key Laboratory of Biodiversity Science and Ecological Engineering; School of Life Science; Fudan University; Shanghai China
| | - J. Wolinska
- Department of Ecosystem Research; Leibniz-Institute of Freshwater Ecology and Inland Fisheries; Berlin Germany
- Department of Biology, Chemistry and Pharmacy; Institute of Biology; Freie Universität Berlin; Berlin Germany
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Strong support for Rensch’s rule in an American clade of lizards (Teiidae and Gymnophtalmidae) and a paradox of the largest tejus. Naturwissenschaften 2015; 102:23. [DOI: 10.1007/s00114-015-1264-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2015] [Accepted: 03/03/2015] [Indexed: 11/25/2022]
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Gassner M, Dejaco T, Schönswetter P, Marec F, Arthofer W, Schlick-Steiner BC, Steiner FM. Extensive variation in chromosome number and genome size in sexual and parthenogenetic species of the jumping-bristletail genus Machilis (Archaeognatha). Ecol Evol 2014; 4:4093-105. [PMID: 25505536 PMCID: PMC4242562 DOI: 10.1002/ece3.1264] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2014] [Revised: 09/05/2014] [Accepted: 09/10/2014] [Indexed: 11/28/2022] Open
Abstract
Parthenogenesis in animals is often associated with polyploidy and restriction to extreme habitats or recently deglaciated areas. It has been hypothesized that benefits conferred by asexual reproduction and polyploidy are essential for colonizing these habitats. However, while evolutionary routes to parthenogenesis are manifold, study systems including polyploids are scarce in arthropods. The jumping-bristletail genus Machilis (Insecta: Archaeognatha) includes both sexual and parthenogenetic species, and recently, the occurrence of polyploidy has been postulated. Here, we applied flow cytometry, karyotyping, and mitochondrial DNA sequencing to three sexual and five putatively parthenogenetic Eastern-Alpine Machilis species to investigate whether (1) parthenogenesis originated once or multiply and (2) whether parthenogenesis is strictly associated with polyploidy. The mitochondrial phylogeny revealed that parthenogenesis evolved at least five times independently among Eastern-Alpine representatives of this genus. One parthenogenetic species was exclusively triploid, while a second consisted of both diploid and triploid populations. The three other parthenogenetic species and all sexual species were diploid. Our results thus indicate that polyploidy can co-occur with parthenogenesis, but that it was not mandatory for the emergence of parthenogenesis in Machilis. Overall, we found a weak negative correlation of monoploid genome size (Cx) and chromosome base number (x), and this connection is stronger among parthenogenetic species alone. Likewise, monoploid genome size decreased with elevation, and we therefore hypothesize that genome downsizing could have been crucial for the persistence of alpine Machilis species. Finally, we discuss the evolutionary consequences of intraspecific chromosomal rearrangements and the presence of B chromosomes. In doing so, we highlight the potential of Alpine Machilis species for research on chromosomal and genome-size alterations during speciation.
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Affiliation(s)
- Melitta Gassner
- Institute of Ecology, University of Innsbruck Technikerstraße 25, Innsbruck, 6020, Austria
| | - Thomas Dejaco
- Institute of Ecology, University of Innsbruck Technikerstraße 25, Innsbruck, 6020, Austria
| | - Peter Schönswetter
- Institute of Botany, University of Innsbruck Sternwartestraße 15, Innsbruck, 6020, Austria
| | - František Marec
- Institute of Entomology, Biology Centre ASCR Branisovska 31, Ceské Budejovice, 37005, Czech Republic
| | - Wolfgang Arthofer
- Institute of Ecology, University of Innsbruck Technikerstraße 25, Innsbruck, 6020, Austria
| | | | - Florian M Steiner
- Institute of Ecology, University of Innsbruck Technikerstraße 25, Innsbruck, 6020, Austria
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