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Gatpatan IGT, Cabulong RB, Sadaba RB. Diversity and Screening of Cellulolytic Microorganisms from Mangrove Forests, Natural Parks, Paddy Field, and Sugarcane Plantation in Panay Island, Philippines. Int J Microbiol 2024; 2024:5573158. [PMID: 39081934 PMCID: PMC11288694 DOI: 10.1155/2024/5573158] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2023] [Revised: 05/12/2024] [Accepted: 06/10/2024] [Indexed: 08/02/2024] Open
Abstract
Cellulolytic microorganisms secrete cellulase, which plays a crucial role in the conversion of lignocellulosic biomass into value-added products with diverse applications in industries, such as biofuel, healthcare, and agriculture. As the world transitions to a bioenergy future, cellulase demand is likely to expand. However, the high cost and low catalytic activity of cellulase hinder the commercialization of biorefineries. Searching for cellulase-producing microorganisms in different environments through bioprospecting can aid in broadening the range of cellulases that are currently available. Meanwhile, the cellulolytic activity of marine microorganisms remains largely unexplored, making it difficult to compare the cellulolytic activity of terrestrial and marine environments. Thus, this study aimed to investigate the diversity and activity of culturable cellulolytic microorganisms in four terrestrial and three marine sites within Panay Island, Philippines. The results showed that the cellulolytic microbial load was tenfold higher in the terrestrial sites than in the marine sites, possibly due to the dynamic mangrove environment. Out of the 42 isolates with a high cellulolytic index (CI) of ≥3.0, 36 were from terrestrial and 6 from marine habitats. The CMCase, Avicelase, and FPase activities were then tested on the 18 isolates with the highest CI. It was observed that many isolates had a high CI, but few exhibited high enzyme activities. Marine isolates showed higher CMCase and Avicelase activities, with comparable FPase activity to their terrestrial counterparts. Isolates S1ACP6B from a sugarcane field and MS1OMP2A from a mangrove site exhibited the highest cellulase activities at 0.41 and 0.29 U/mg, respectively, and were identified as Enterobacter roggenkampii and Rhodococcus erythropolis, respectively. Among the 18 identified isolates, three are resistant to chloramphenicol and three isolates are potentially new species of Halomonas sp. MS1ACP1B, Albirhodobacter sp. MP2ACP3B, and Saccharomycetaceae sp. B1CZP10A. Overall, this study provides an insight on the composition of cellulolytic microbial load and their activities among various habitats.
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Affiliation(s)
- Isabel Grace T. Gatpatan
- Division of Biological SciencesCollege of Arts and SciencesUniversity of the Philippines Visayas, Miagao, Iloilo 5023, Philippines
| | - Rhudith B. Cabulong
- Division of Biological SciencesCollege of Arts and SciencesUniversity of the Philippines Visayas, Miagao, Iloilo 5023, Philippines
| | - Resurreccion B. Sadaba
- Division of Biological SciencesCollege of Arts and SciencesUniversity of the Philippines Visayas, Miagao, Iloilo 5023, Philippines
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Jeyaram K, Murugan D, Velmurugan S, Prabhu AA, Raja S, Bose SA, Balakrishnan D. Investigation of the influence of Candida tropicalis on bioethanol production using sugarcane bagasse: stochastic and in silico analysis. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024:10.1007/s11356-024-34226-5. [PMID: 38987518 DOI: 10.1007/s11356-024-34226-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2024] [Accepted: 06/30/2024] [Indexed: 07/12/2024]
Abstract
This study investigated the impact of Candida tropicalis NITCSK13 on sugarcane bagasse (SCB) consolidated bioprocessing (CSB) using various parameters, such as pH, steam explosion (STEX) pretreatment, and temperature (at two different temperatures, cellulose hydrolysis and ethanol fermentation). The backpropagation neural network (BPNN) method simulated the optimal CSB conditions, achieving a maximum ethanol yield of 44 ± 0.32 g/L (0.443 g of ethanol/g of SCB) from STEX pretreated SCB within 48 h at 55 °C for cellulose hydrolysis and 33 °C for ethanol fermentation and pH 3.5. The simulated conditions were experimentally validated and showed an R2 value of 0.998 and absolute average deviation (AAD) of 1.23%. The strain NITCSK13 also exhibited a high ethanol tolerance of 16% (v/v). The interactions between the inhibitors, cellobiose, furfural, and thermocellulase were assessed through molecular docking. The results revealed a maximum inhibitory constant of 3.7 mM for furfural against the endoglucanase (EnG) of Humicola insolens (2ENG) at 50 °C. Acremonium chrysogenum endoglucanase (5M2D) exhibited a maximum of 88.7 µM for cellobiose at 50 °C. The SWISS homology model of EnG from Candida viswanathii exhibited inhibitory effects similar to those of EnG from Thermoascus and Thermotoga, indicating that the moderately thermophilic yeast Candida sp. cellulase may be capable of efficiently tolerating inhibitors and could be a promising candidate for consolidated bioprocessing of cellulosic ethanol.
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Affiliation(s)
- Kanimozhi Jeyaram
- Department of Biotechnology, School of Bio, Chemical and Processing Engineering, Kalasalingam Academy of Research and Education, Krishnankoil, Tamil Nadu, India.
| | - Dharanidharan Murugan
- Department of Biotechnology, School of Bio, Chemical and Processing Engineering, Kalasalingam Academy of Research and Education, Krishnankoil, Tamil Nadu, India
| | | | - Ashish A Prabhu
- Department of Biotechnology, National Institute of Technology, Warangal, Telangana, India
| | - Sivashankar Raja
- Department of Biotechnology, Vel Tech Dr Rangarajan Dr Sagunthala R&D Institute of Science and Technology, Chennai, Tamilnadu, India
| | - Sathya A Bose
- Department of Biotechnology, Saveetha School of Engineering, Saveetha Institute of Medical and Technical Sciences, Chennai, India
| | - Deepanraj Balakrishnan
- Department of Mechanical Engineering, College of Engineering, Prince Mohammad Bin Fahd University, Al-Khobar, Saudi Arabia
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Palit K, Das S. Cellulolytic potential of mangrove bacteria Bacillus haynesii DS7010 and the effect of anthropogenic and environmental stressors on bacterial survivability and cellulose metabolism. ENVIRONMENTAL RESEARCH 2024; 252:118774. [PMID: 38552827 DOI: 10.1016/j.envres.2024.118774] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/03/2024] [Revised: 03/21/2024] [Accepted: 03/21/2024] [Indexed: 04/02/2024]
Abstract
Cellulose degrading bacterial diversity of Bhitarkanika mangrove ecosystem, India, was uncovered and the cellulose degradation mechanism in Bacillus haynesii DS7010 under the modifiers such as pH (pCO2), salinity and lead (Pb) was elucidated in the present study. The abundance of cellulose degrading heterotrophic bacteria was found to be higher in mangrove sediment than in water. The most potential strain, B. haynesii DS7010 showed the presence of endoglucanase, exoglucanase and β-glucosidase with the maximum degradation recorded at 48 h of incubation, with 1% substrate concentration at 41 °C incubation temperature. Two glycoside hydrolase genes, celA and celB were confirmed in this bacterium. 3D structure prediction of the translated CelA and CelB proteins showed maximum similarities with glycoside hydrolase 48 (GH48) and glycoside hydrolase 5 (GH5) respectively. Native PAGE followed by zymogram assay unveiled the presence of eight isoforms of cellulase ranged from 78 kDa to 245 kDa. Among the stressors, most adverse effect was observed under Pb stress at 1400 ppm concentration, followed by pH at pH 4. This was indicated by prolonged lag phase growth, higher reactive oxygen species (ROS) production, lower enzyme activity and downregulation of celA and celB gene expressions. Salinity augmented bacterial metabolism up to 3% NaCl concentration. Mangrove leaf litter degradation by B. haynesii DS7010 indicated a substantial reduction in cellulolytic potential of the bacterium in response to the synergistic effect of the stressors. Microcosm set up with the stressors exhibited 0.97% decrease in total carbon (C%) and 0.02% increase in total nitrogen (N%) after 35 d of degradation while under natural conditions, the reduction in C and the increase in N were 4.05% and 0.2%, respectively. The findings of the study suggest the cellulose degradation mechanism of a mangrove bacterium and its resilience to the future consequences of environmental pollution and climate change.
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Affiliation(s)
- Krishna Palit
- Laboratory of Environmental Microbiology and Ecology (LEnME), Department of Life Science, National Institute of Technology, Rourkela, 769008, Odisha, India
| | - Surajit Das
- Laboratory of Environmental Microbiology and Ecology (LEnME), Department of Life Science, National Institute of Technology, Rourkela, 769008, Odisha, India.
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Sutaoney P, Rai SN, Sinha S, Choudhary R, Gupta AK, Singh SK, Banerjee P. Current perspective in research and industrial applications of microbial cellulases. Int J Biol Macromol 2024; 264:130639. [PMID: 38453122 DOI: 10.1016/j.ijbiomac.2024.130639] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Revised: 01/12/2024] [Accepted: 03/03/2024] [Indexed: 03/09/2024]
Abstract
The natural interactions between various bacteria, fungi, and other cellulolytic microorganisms destroy lignocellulosic polymers. The efficacy of this process is determined by the combined action of three main enzymes: endoglucanases, exo-glucanases, and β-glucosidase. The enzyme attacks the polymeric structure's β-1,4-linkages during the cellulose breakdown reaction. This mechanism is crucial for the environment as it recycles cellulose in the biosphere. However, there are problems with enzymatic cellulose breakdown, including complex cellulase structure, insufficient degradation efficacy, high production costs, and post-translational alterations, many of which are closely related to certain unidentified cellulase properties. These issues impede the practical use of cellulases. A developing area of research is the application of this similar paradigm for industrial objectives. Cellulase enzyme exhibits greater promise in many critical industries, including biofuel manufacture, textile smoothing and finishing, paper and pulp manufacturing, and farming. However, the study on cellulolytic enzymes must move forward in various directions, including increasing the activity of cellulase as well as designing peptides to give biocatalysts their desired attributes. This manuscript includes an overview of current research on different sources of cellulases, their production, and biochemical characterization.
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Affiliation(s)
- Priya Sutaoney
- Present address-Department of Microbiology, Kalinga University, Raipur 492101, Chhattisgarh, India; Microbiology Laboratory, School of Studies in Life Science, Pt. Ravishankar Shukla University, Raipur 492010, Chhattisgarh, India
| | - Sachchida Nand Rai
- Centre of Experimental Medicine and Surgery, Institute of Medical Sciences, Banaras Hindu University, Varanasi 221005, India
| | - Sakshi Sinha
- Present address-Department of Microbiology, Kalinga University, Raipur 492101, Chhattisgarh, India
| | - Rachana Choudhary
- Department of Microbiology, Shri Shankaracharya Mahavidyalaya, Junwani, Durg 490005, Chhattisgarh, India
| | - A K Gupta
- Microbiology Laboratory, School of Studies in Life Science, Pt. Ravishankar Shukla University, Raipur 492010, Chhattisgarh, India
| | - Santosh Kumar Singh
- Centre of Experimental Medicine and Surgery, Institute of Medical Sciences, Banaras Hindu University, Varanasi 221005, India.
| | - Paromita Banerjee
- Department of Cardiology, All India Institute of Medical Sciences, Rishikesh, 249203, Uttarakhand, India.
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Tan MCY, Zakaria MR, Liew KJ, Chong CS. Draft genome sequence of Hahella sp. CR1 and its ability in producing cellulases for saccharifying agricultural biomass. Arch Microbiol 2023; 205:278. [PMID: 37420023 DOI: 10.1007/s00203-023-03617-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2023] [Revised: 06/20/2023] [Accepted: 06/23/2023] [Indexed: 07/09/2023]
Abstract
Hahella is a genus that has not been well-studied, with only two identified species. The potential of this genus to produce cellulases is yet to be fully explored. The present study isolated Hahella sp. CR1 from mangrove soil in Tanjung Piai National Park, Malaysia, and performed whole genome sequencing (WGS) using NovaSeq 6000. The final assembled genome consists of 62 contigs, 7,106,771 bp, a GC ratio of 53.5%, and encoded for 6,397 genes. The CR1 strain exhibited the highest similarity with Hahella sp. HN01 compared to other available genomes, where the ANI, dDDH, AAI, and POCP were 97.04%, 75.2%, 97.95%, and 91.0%, respectively. In addition, the CAZymes analysis identified 88 GTs, 54 GHs, 11 CEs, 7 AAs, 2 PLs, and 48 CBMs in the genome of strain CR1. Among these proteins, 11 are related to cellulose degradation. The cellulases produced from strain CR1 were characterized and demonstrated optimal activity at 60 ℃, pH 7.0, and 15% (w/v) sodium chloride. The enzyme was activated by K+, Fe2+, Mg2+, Co2+, and Tween 40. Furthermore, cellulases from strain CR1 improved the saccharification efficiency of a commercial cellulase blend on the tested agricultural wastes, including empty fruit bunch, coconut husk, and sugarcane bagasse. This study provides new insights into the cellulases produced by strain CR1 and their potential to be used in lignocellulosic biomass pre-treatment.
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Affiliation(s)
- Melvin Chun Yun Tan
- Department of Biosciences, Faculty of Science, Universiti Teknologi Malaysia, 81310, Skudai, Johor, Malaysia
| | - Muhammad Ramziuddin Zakaria
- Department of Biosciences, Faculty of Science, Universiti Teknologi Malaysia, 81310, Skudai, Johor, Malaysia
| | - Kok Jun Liew
- Department of Biosciences, Faculty of Science, Universiti Teknologi Malaysia, 81310, Skudai, Johor, Malaysia
| | - Chun Shiong Chong
- Department of Biosciences, Faculty of Science, Universiti Teknologi Malaysia, 81310, Skudai, Johor, Malaysia.
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Korsa G, Konwarh R, Masi C, Ayele A, Haile S. Microbial cellulase production and its potential application for textile industries. ANN MICROBIOL 2023; 73:13. [DOI: 10.1186/s13213-023-01715-w] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2022] [Accepted: 03/22/2023] [Indexed: 09/03/2023] Open
Abstract
Abstract
Purpose
The textile industry’s previous chemical use resulted in thousands of practical particulate emissions, such as machine component damage and drainage system blockage, both of which have practical implications. Enzyme-based textile processing is cost-effective, environmentally friendly, non-hazardous, and water-saving. The purpose of this review is to give evidence on the potential activity of microbial cellulase in the textile industry, which is mostly confined to the realm of research.
Methods
This review was progressive by considering peer-reviewed papers linked to microbial cellulase production, and its prospective application for textile industries was appraised and produced to develop this assessment. Articles were divided into two categories based on the results of trustworthy educational journals: methods used to produce the diversity of microorganisms through fermentation processes and such approaches used to produce the diversity of microbes through microbial fermentation. Submerged fermentation (SMF) and solid-state fermentation (SSF) techniques are currently being used to meet industrial demand for microbial cellulase production in the bio textile industry.
Results
Microbial cellulase is vital for increasing day to day due to its no side effect on the environment and human health becoming increasingly important. In conventional textile processing, the gray cloth was subjected to a series of chemical treatments that involved breaking the dye molecule’s amino group with Cl − , which started and accelerated dye(-resistant) bond cracking. A cellulase enzyme is primarily derived from a variety of microbial species found in various ecological settings as a biotextile/bio-based product technology for future needs in industrial applications.
Conclusion
Cellulase has been produced for its advantages in cellulose-based textiles, as well as for quality enhancement and fabric maintenance over traditional approaches. Cellulase’s role in the industry was microbial fermentation processes in textile processing which was chosen as an appropriate and environmentally sound solution for a long and healthy lifestyle.
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Vásquez E, Millones C. Isolation and Identification of Bacteria of Genus Bacillus from Composting Urban Solid Waste and Palm Forest in Northern Peru. Microorganisms 2023; 11:microorganisms11030751. [PMID: 36985324 PMCID: PMC10055787 DOI: 10.3390/microorganisms11030751] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2023] [Revised: 02/26/2023] [Accepted: 03/07/2023] [Indexed: 03/17/2023] Open
Abstract
A technical challenge for composting in Peruvian cities with annual temperatures below 20 °C is that the degradation of municipal solid waste (MSW) is slow, so the identification of cold-adapted bacteria would be interesting for use as inoculants in places with these climatic conditions. This study isolated, identified, and evaluated bacterial strains with cellulolytic and amylolytic activities at low temperatures. Bacterial strains were isolated from the Chachapoyas Municipal Composting Plant and soil from the Ocol Palm Forest in northern Peru. The screening was carried out to evaluate the extracellular enzyme activity of the strains at low temperatures, grouping those with cellulolytic and cellulolytic/amylolytic activities. The DNA-barcoding using 16S rRNA and enzyme activity allowed the identification and selection of five species with enzymatic activity at 15 and 20 °C of the genus Bacillus, three with cellulolytic/amylolytic activity (B. wiedmanii, B. subtilis, and B. velezensis), and two with cellulolytic activity (B. safensis subsp. safensis, and B. subtilis). These strains showed tolerance to temperatures below optimum and could be used in further studies as inoculants for composting organic wastes at temperatures below 20 °C.
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Malik MS, Rehman A, Khan IU, Khan TA, Jamil M, Rha ES, Anees M. Thermo-neutrophilic cellulases and chitinases characterized from a novel putative antifungal biocontrol agent: Bacillus subtilis TD11. PLoS One 2023; 18:e0281102. [PMID: 36706132 PMCID: PMC9882894 DOI: 10.1371/journal.pone.0281102] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2022] [Accepted: 01/16/2023] [Indexed: 01/28/2023] Open
Abstract
Cellulose and chitin are the most abundant naturally occurring biopolymers synthesized in plants and animals and are used for synthesis of different organic compounds and acids in the industry. Therefore, cellulases and chitinases are important for their multiple uses in industry and biotechnology. Moreover, chitinases have a role in the biological control of phytopathogens. A bacterial strain Bacillus subtilis TD11 was previously isolated and characterized as a putative biocontrol agent owing to its significant antifungal potential. In this study, cellulase and chitinase produced by the strain B. subtilis TD11 were purified and characterized. The activity of the cellulases and chitinases were optimized at different pH (2 to 10) and temperatures (20 to 90°C). The substrate specificity of cellulases was evaluated using different substances including carboxymethyl cellulose (CMC), hydroxyethyl cellulose (HEC), and crystalline substrates. The cellulase produced by B. subtilis TD11 had a molecular mass of 45 kDa while that of chitinase was 55 kDa. The optimal activities of the enzymes were found at neutral pH (6.0 to 7.0). The optimum temperature for the purified cellulases was in the range of 50 to 70°C while, purified chitinases were optimally active at 50°C. The highest substrate specificity of the purified cellulase was found for CMC (100%) followed by HEC (>50% activity) while no hydrolysis was observed against the crystalline substrates. Moreover, it was observed that the purified chitinase was inhibitory against the fungi containing chitin in their hyphal walls i.e., Rhizoctonia, Colletotrichum, Aspergillus and Fusarium having a dose-effect relationship.
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Affiliation(s)
- Muhammad Saqib Malik
- Department of Microbiology, Kohat University of Science and Technology, Kohat, Pakistan
| | - Abdul Rehman
- Department of Microbiology, Kohat University of Science and Technology, Kohat, Pakistan
| | - Irfan Ullah Khan
- Vaccine Development Group, Animal Sciences Division, Nuclear Institute for Agriculture and Biology, Faisalabad, Pakistan
| | - Taj Ali Khan
- Department of Microbiology, Khyber Medical University Peshawar, Khyber Pakhtunkhwa, Pakistan
| | - Muhammad Jamil
- Department of Biotechnology and Genetic Engineering, Kohat University of Science and Technology, Kohat, Pakistan
| | - Eui Shik Rha
- Department of Well-Being Resources, Sunchon National University, Suncheon, Republic of Korea
- * E-mail: (MA); (ESR)
| | - Muhammad Anees
- Department of Microbiology, Kohat University of Science and Technology, Kohat, Pakistan
- * E-mail: (MA); (ESR)
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Palit K, Rath S, Chatterjee S, Das S. Microbial diversity and ecological interactions of microorganisms in the mangrove ecosystem: Threats, vulnerability, and adaptations. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022; 29:32467-32512. [PMID: 35182344 DOI: 10.1007/s11356-022-19048-7] [Citation(s) in RCA: 19] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2021] [Accepted: 01/31/2022] [Indexed: 06/14/2023]
Abstract
Mangroves are among the world's most productive ecosystems and a part of the "blue carbon" sink. They act as a connection between the terrestrial and marine ecosystems, providing habitat to countless organisms. Among these, microorganisms (e.g., bacteria, archaea, fungi, phytoplankton, and protozoa) play a crucial role in this ecosystem. Microbial cycling of major nutrients (carbon, nitrogen, phosphorus, and sulfur) helps maintain the high productivity of this ecosystem. However, mangrove ecosystems are being disturbed by the increasing concentration of greenhouse gases within the atmosphere. Both the anthropogenic and natural factors contribute to the upsurge of greenhouse gas concentration, resulting in global warming. Changing climate due to global warming and the increasing rate of human interferences such as pollution and deforestation are significant concerns for the mangrove ecosystem. Mangroves are susceptible to such environmental perturbations. Global warming, human interventions, and its consequences are destroying the ecosystem, and the dreadful impacts are experienced worldwide. Therefore, the conservation of mangrove ecosystems is necessary for protecting them from the changing environment-a step toward preserving the globe for better living. This review highlights the importance of mangroves and their microbial components on a global scale and the degree of vulnerability of the ecosystems toward anthropic and climate change factors. The future scenario of the mangrove ecosystem and the resilience of plants and microbes have also been discussed.
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Affiliation(s)
- Krishna Palit
- Laboratory of Environmental Microbiology and Ecology (LEnME), Department of Life Science, National Institute of Technology, Rourkela, 769008, Odisha, India
| | - Sonalin Rath
- Laboratory of Environmental Microbiology and Ecology (LEnME), Department of Life Science, National Institute of Technology, Rourkela, 769008, Odisha, India
| | - Shreosi Chatterjee
- Laboratory of Environmental Microbiology and Ecology (LEnME), Department of Life Science, National Institute of Technology, Rourkela, 769008, Odisha, India
| | - Surajit Das
- Laboratory of Environmental Microbiology and Ecology (LEnME), Department of Life Science, National Institute of Technology, Rourkela, 769008, Odisha, India.
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Makowski K, Leszczewicz M, Broncel N, Lipińska-Zubrycka L, Głębski A, Komorowski P, Walkowiak B. Isolation, Biochemical Characterisation and Identification of Thermotolerant and Cellulolytic Paenibacillus lactis and Bacillus licheniformis. Food Technol Biotechnol 2021; 59:325-336. [PMID: 34759764 PMCID: PMC8542176 DOI: 10.17113/ftb.59.03.21.7096] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2020] [Accepted: 06/24/2021] [Indexed: 11/12/2022] Open
Abstract
Research background Cellulose is an ingredient of waste materials that can be converted to other valuable substances. This is possible provided that the polymer molecule is degraded to smaller particles and used as a carbon source by microorganisms. Because of the frequently applied methods of pretreatment of lignocellulosic materials, the cellulases derived from thermophilic microorganisms are particularly desirable. Experimental approach We were looking for cellulolytic microorganisms able to grow at 50 °C and we described their morphological features and biochemical characteristics based on carboxymethyl cellulase (CMCase) activity and the API® ZYM system. The growth curves during incubation at 50 °C were examined using the BioLector® microbioreactor. Results and conclusions Forty bacterial strains were isolated from fermenting hay, geothermal karst spring, hot spring and geothermal pond at 50 °C. The vast majority of the bacteria were Gram-positive and rod-shaped with the maximum growth temperature of at least 50 °C. We also demonstrated a large diversity of biochemical characteristics among the microorganisms. The CMCase activity was confirmed in 27 strains. Hydrolysis capacities were significant in bacterial strains: BBLN1, BSO6, BSO10, BSO13 and BSO14, and reached 2.74, 1.62, 1.30, 1.38 and 8.02 respectively. Rapid and stable growth was observed, among others, for BBLN1, BSO10, BSO13 and BSO14. The strains fulfilled the selection conditions and were identified based on the 16S rDNA sequences. BBLN1, BSO10, BSO13 were classified as Bacillus licheniformis, whereas BSO14 as Paenibacillus lactis. Novelty and scientific contribution We described cellulolytic activity and biochemical characteristics of many bacteria isolated from hot environments. We are also the first to report the cellulolytic activity of thermotolerant P. lactis. Described strains can be a source of new thermostable cellulases, which are extremely desirable in various branches of circular bioeconomy.
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Affiliation(s)
- Krzysztof Makowski
- Industrial Biotechnology Laboratory, Bionanopark Ltd., Dubois 114/116, 93-465 Lodz, Poland.,Biotechnika, Tymienieckiego 25, 90-350 Lodz, Poland
| | - Martyna Leszczewicz
- Industrial Biotechnology Laboratory, Bionanopark Ltd., Dubois 114/116, 93-465 Lodz, Poland
| | - Natalia Broncel
- Industrial Biotechnology Laboratory, Bionanopark Ltd., Dubois 114/116, 93-465 Lodz, Poland
| | - Lidia Lipińska-Zubrycka
- Industrial Biotechnology Laboratory, Bionanopark Ltd., Dubois 114/116, 93-465 Lodz, Poland.,Institute of Genetics and Biotechnology, Faculty of Biology, University of Warsaw, Miecznikowa 1, 02-096 Warsaw, Poland
| | - Adrian Głębski
- Industrial Biotechnology Laboratory, Bionanopark Ltd., Dubois 114/116, 93-465 Lodz, Poland
| | - Piotr Komorowski
- Molecular and Nanostructural Biophysics Laboratory, Bionanopark Ltd., Dubois 114/116, 93-465 Lodz, Poland.,Institute of Materials Science and Engineering, Lodz University of Technology, Stefanowskiego 1/15, 90-537 Lodz, Poland
| | - Bogdan Walkowiak
- Molecular and Nanostructural Biophysics Laboratory, Bionanopark Ltd., Dubois 114/116, 93-465 Lodz, Poland.,Institute of Materials Science and Engineering, Lodz University of Technology, Stefanowskiego 1/15, 90-537 Lodz, Poland
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Lactic acid production ability of Lactobacillus sp. from four tropical fruits using their by-products as carbon source. Heliyon 2021; 7:e07079. [PMID: 34136681 PMCID: PMC8180611 DOI: 10.1016/j.heliyon.2021.e07079] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2020] [Revised: 02/25/2021] [Accepted: 05/12/2021] [Indexed: 11/20/2022] Open
Abstract
The present work was aimed at studying the technological properties of lactobacilli isolated from four tropical fruits (banana, papaya, pineapple, and orange) sold in Dschang (a city of the Menoua Division, West-Cameroon), as well as their ability to produce lactic acid (LA) from by-products of these fruits. After isolation and preliminary identification, homofermentative isolates were investigated for acidifying, amylolytic, cellulolytic activities as well as exopolysaccharides production. The chemical composition of the by-products was determined prior to fermentation assays and the most promising isolates were identified by 16S rRNA gene sequencing. From the 54 homofermentative lactobacilli obtained, 9 isolates were pre-selected based on their higher acidifying activity in MRS-Glucose medium. They all showed amylolytic activity, with the most important activity (54.26 ± 0.10 μg of reducing sugar/ml/min) recorded by isolate O31. Relatively to their cellulolytic activity, isolate 1B9 showed the best activity, displaying a production rate of 7.98 ± 0.40 μg glucose/ml/min, while none of them produced exopolysaccharides. The proximate analysis showed that the fruit-derived by-products contained proteins (0.40 ± 0.06% DM to 1.54 ± 0.06% DM), carbohydrates (61.75 ± 0.75% DM to 71.94 ± 2.02% DM) that are main nutrient needs for bacterial growth. Banana-derived and pineapple-derived by-products showed the highest LA production rates with values, 26.37 ± 0.05 g/l (isolate 3A5) and 26.29 ± 0.38 g/l (isolate 1B9) respectively after 16 h of fermentation. Based on the principal component analysis, isolates O31, 1B9, 3A5, 3A9 and 4O8 were selected as the most promising isolates and were identified as Lactobacillus plantarum strains. According to the obtained results, lactobacilli from tropical fruits displayed properties of commerical interest and can be promising candidates in the valorisation of by-products from tropical fruits through LA production.
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Carboxymethyl Cellulase (CMCase) from UV-irradiation Mutated Bacillus cereus FOA-2 cultivated on Plantain (Musa parasidiaca) Stalk-based Medium: Production, Purification and Characterization. SCIENTIFIC AFRICAN 2021. [DOI: 10.1016/j.sciaf.2020.e00691] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022] Open
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13
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Kaur A, Katyal P. Microbial Interventions for Composting of Organic and Lignocellulose Waste. APPL BIOCHEM MICRO+ 2021. [DOI: 10.1134/s0003683821010105] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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14
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Obi LU, Tekere M, Roopnarain A, Sanko T, Maguvu TE, Bezuidenhout CC, Adeleke RA. Whole genome sequence of Serratia marcescens 39_H1, a potential hydrolytic and acidogenic strain. ACTA ACUST UNITED AC 2020; 28:e00542. [PMID: 33102161 PMCID: PMC7569290 DOI: 10.1016/j.btre.2020.e00542] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2020] [Revised: 09/27/2020] [Accepted: 10/09/2020] [Indexed: 11/28/2022]
Abstract
Serratia marcescens 39_H1 could enhance the hydrolysis of lignocellulosic biomass. Serratia marcescens 39_H1 is a plant growth promoting organism. Genome analysis showed diverse potential biotechnological application of organism. This is an original report on the hydrolytic and acidogenic attributes ofSerratia marcescens 39_H1 for biogas production.
Here, we report a high quality annotated draft genome of Serratia marcescens 39_H1, a Gram-negative facultative anaerobe that was isolated from an anaerobic digester. The strain exhibited hydrolytic/acidogenic properties by significantly improving methane production when used as a single isolate inoculum during anaerobic digestion of water hyacinth and cow dung. The total genome size of the isolate was 5,106,712 bp which corresponds to an N50 of 267,528 and G + C content of 59.7 %. Genome annotation with the NCBI Prokaryotic Genome Annotation Pipeline (PGAP) predicted a total of 4,908 genes of which 4,755 were protein coding genes; there were no plasmids detected. A number of genes associated with hydrolytic/acidogenic activities as well as other metabolic activities were identified and discussed.
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Affiliation(s)
- Linda U Obi
- Department of Environmental Sciences, University of South Africa, Johannesburg, South Africa.,Microbiology and Environmental Biotechnology Research Group, Institute for Soil, Climate and Water, Agricultural Research Council, Arcadia, 0083, Pretoria, South Africa
| | - Memory Tekere
- Department of Environmental Sciences, University of South Africa, Johannesburg, South Africa
| | - Ashira Roopnarain
- Microbiology and Environmental Biotechnology Research Group, Institute for Soil, Climate and Water, Agricultural Research Council, Arcadia, 0083, Pretoria, South Africa
| | - Tomasz Sanko
- Unit for Environment Sciences and Management, North-West University (Potchefstroom Campus), Potchefstroom, South Africa
| | - Tawanda E Maguvu
- Unit for Environment Sciences and Management, North-West University (Potchefstroom Campus), Potchefstroom, South Africa
| | - Cornelius C Bezuidenhout
- Unit for Environment Sciences and Management, North-West University (Potchefstroom Campus), Potchefstroom, South Africa
| | - Rasheed A Adeleke
- Microbiology and Environmental Biotechnology Research Group, Institute for Soil, Climate and Water, Agricultural Research Council, Arcadia, 0083, Pretoria, South Africa.,Unit for Environment Sciences and Management, North-West University (Potchefstroom Campus), Potchefstroom, South Africa
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15
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Schwendner P, Jobson ME, Schuerger AC. Addition of anaerobic electron acceptors to solid media did not enhance growth of 125 spacecraft bacteria under simulated low-pressure Martian conditions. Sci Rep 2020; 10:18290. [PMID: 33106561 PMCID: PMC7588431 DOI: 10.1038/s41598-020-75222-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2020] [Accepted: 10/06/2020] [Indexed: 11/25/2022] Open
Abstract
To protect Mars from microbial contamination, research on growth of microorganisms found in spacecraft assembly clean rooms under simulated Martian conditions is required. This study investigated the effects of low atmospheric pressure on the growth of chemoorganotrophic spacecraft bacteria and whether the addition of Mars relevant anaerobic electron acceptors might enhance growth. The 125 bacteria screened here were recovered from actual Mars spacecraft. Growth at 7 hPa, 0 °C, and a CO2-enriched anoxic atmosphere (called low-PTA conditions) was tested on five TSA-based media supplemented with anaerobic electron acceptors. None of the 125 spacecraft bacteria showed active growth under the tested low-PTA conditions and amended media. In contrast, a decrease in viability was observed in most cases. Growth curves of two hypopiezotolerant strains, Serratia liquefaciens and Trichococcus pasteurii, were performed to quantify the effects of the added anaerobic electron acceptors. Slight variations in growth rates were determined for both bacteria. However, the final cell densities were similar for all media tested, indicating no general preference for any specific anaerobic electron acceptor. By demonstrating that a broad diversity of chemoorganotrophic and culturable spacecraft bacteria do not grow under the tested conditions, we conclude that there may be low risk of growth of chemoorganotrophic bacteria typically recovered from Mars spacecraft during planetary protection bioburden screenings.
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Affiliation(s)
- Petra Schwendner
- Space Life Sciences Lab, University of Florida, 505 Odyssey Way, Exploration Park, Merritt Island, FL, 32953, USA.
| | - Mary-Elizabeth Jobson
- Space Life Sciences Lab, University of Florida, 505 Odyssey Way, Exploration Park, Merritt Island, FL, 32953, USA
| | - Andrew C Schuerger
- Space Life Sciences Lab, University of Florida, 505 Odyssey Way, Exploration Park, Merritt Island, FL, 32953, USA
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16
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Shrestha N, Tripathi AK, Govil T, Sani RK, Urgun-Demirtas M, Kasthuri V, Gadhamshetty V. Electricity from lignocellulosic substrates by thermophilic Geobacillus species. Sci Rep 2020; 10:17047. [PMID: 33046790 PMCID: PMC7552438 DOI: 10.1038/s41598-020-72866-y] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2020] [Accepted: 09/03/2020] [Indexed: 11/09/2022] Open
Abstract
Given our vast lignocellulosic biomass reserves and the difficulty in bioprocessing them without expensive pretreatment and fuel separation steps, the conversion of lignocellulosic biomass directly into electricity would be beneficial. Here we report the previously unexplored capabilities of thermophilic Geobacillus sp. strain WSUCF1 to generate electricity directly from such complex substrates in microbial fuel cells. This process obviates the need for exogenous enzymes and redox mediator supplements. Cyclic voltammetry and chromatography studies revealed the electrochemical signatures of riboflavin molecules that reflect mediated electron transfer capabilities of strain WSUCF1. Proteomics and genomics analysis corroborated that WSUCF1 biofilms uses type-II NADH dehydrogenase and demethylmenaquinone methyltransferase to transfer the electrons to conducting anode via the redox active pheromone lipoproteins localized at the cell membrane.
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Affiliation(s)
- Namita Shrestha
- Civil and Environmental Engineering, South Dakota School of Mines and Technology, Rapid City, SD, 57701, USA. .,Department of Civil and Environmental Engineering, Rose-Hulman Institute of Technology, Terre Haute, IN, 47803, USA.
| | - Abhilash Kumar Tripathi
- Department of Biological and Chemical Engineering, South Dakota School of Mines and Technology, Rapid City, SD, 57701, USA
| | - Tanvi Govil
- Department of Biological and Chemical Engineering, South Dakota School of Mines and Technology, Rapid City, SD, 57701, USA
| | - Rajesh Kumar Sani
- Department of Biological and Chemical Engineering, South Dakota School of Mines and Technology, Rapid City, SD, 57701, USA. .,BuGReMeDEE Consortium, South Dakota School of Mines and Technology, Rapid City, SD, 57701, USA.
| | - Meltem Urgun-Demirtas
- Energy Global Security Division, Argonne National Laboratory, Lemont, IL, 60439, USA
| | - Venkateswaran Kasthuri
- Biotechnology and Planetary Protection Group, Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, 91109, USA
| | - Venkataramana Gadhamshetty
- Civil and Environmental Engineering, South Dakota School of Mines and Technology, Rapid City, SD, 57701, USA. .,BuGReMeDEE Consortium, South Dakota School of Mines and Technology, Rapid City, SD, 57701, USA.
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dos Reis SV, Beys-da-Silva WO, Tirloni L, Santi L, Seixas A, Termignoni C, da Silva MV, Macedo AJ. The extremophile Anoxybacillus sp. PC2 isolated from Brazilian semiarid region (Caatinga) produces a thermostable keratinase. J Basic Microbiol 2020; 60:809-815. [PMID: 32602226 PMCID: PMC11025368 DOI: 10.1002/jobm.202000186] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2020] [Revised: 05/26/2020] [Accepted: 06/16/2020] [Indexed: 02/03/2023]
Abstract
The aim of this study was to select and identify thermophilic bacteria from Caatinga biome (Brazil) able to produce thermoactive keratinases and characterize the keratinase produced by the selected isolate. After enrichment in keratin culture media, an Anoxybacillus caldiproteolyticus PC2 was isolated. This thermotolerant isolate presents a remarkable feature producing a thermostable keratinase at 60°C. The partially purified keratinase, identified as a thermolysin-like peptidase, was active at a pH range of 5.0-10.0 with maximal activity at a temperature range of 50-80°C. The optimal activity was observed at pH 7.0 and 50-60°C. These characteristics are potentially useful for biotechnological purposes such as processing and bioconversion of keratin.
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Affiliation(s)
- Sharon V. dos Reis
- Centro de Biotecnologia, Universidade Federal do Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, Brazil
| | - Walter O. Beys-da-Silva
- Faculdade de Farmácia, Universidade Federal do Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, Brazil
| | - Lucas Tirloni
- Centro de Biotecnologia, Universidade Federal do Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, Brazil
| | - Lucélia Santi
- Faculdade de Farmácia, Universidade Federal do Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, Brazil
| | - Adriana Seixas
- Departamento de Ciências Básicas da Saude, Universidade Federal de Ciências da Saúde de Porto Alegre, Porto Alegre, Rio Grande do Sul, Brazil
| | - Carlos Termignoni
- Centro de Biotecnologia, Universidade Federal do Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, Brazil
- Departamento de Bioquímica, Universidade Federal do Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, Brazil
| | - Márcia V. da Silva
- Departamento de Bioquímica, Universidade Federal de Pernambuco, Recife, Pernambuco, Brazil
| | - Alexandre J. Macedo
- Centro de Biotecnologia, Universidade Federal do Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, Brazil
- Faculdade de Farmácia, Universidade Federal do Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, Brazil
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Tang Z, Lin Z, Wang Y, Zhao P, Kuang F, Zhou J. Coupling of thermophilic biofilm-based systems and ozonation for enhanced organics removal from high-temperature pulping wastewater: Performance, microbial communities, and pollutant transformations. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 714:136802. [PMID: 31982769 DOI: 10.1016/j.scitotenv.2020.136802] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/20/2019] [Revised: 01/11/2020] [Accepted: 01/17/2020] [Indexed: 06/10/2023]
Abstract
This study focused on the establishment of thermophilic biofilm-based systems (TBSs) coupled with ozonation for treatment of high-temperature pulping wastewater. The effects of the inoculum, sludge growth mode, and temperature were investigated. These factors played roles in the organics removal performance and microbial communities of pulping wastewater treatment systems. At 50 °C, the TBS inoculated with optimal inoculum achieved 59.12% and 37.96% reductions in COD and chromaticity, which were superior to the reductions achieved by other systems. In this TBS, thermophilic lignocellulolytic microorganisms (Chloroflexus, Meiothermus, norank_f_Caldilineaceae, and Roseiflexus) and carbohydrate-fermenting bacteria (norank_f_Anaerolineaceae) were predominant. Their relative abundances were 25.55% and 10.42%, respectively. For enhanced removal of COD and chromaticity, an integrated system consisting of a primary TBS, ozonation, and a secondary TBS was proposed. The total COD and chromaticity removal efficiencies increased to 90.48% and 87.89%, respectively. BOD5/COD increased from 0.20 to 0.40, and shifts of lignin-like and humic acid-like substances were observed during ozonation with the primary TBS effluent.
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Affiliation(s)
- Zhiyang Tang
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing 400045, PR China
| | - Ziyuan Lin
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing 400045, PR China
| | - Yingmu Wang
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing 400045, PR China
| | - Pengcheng Zhao
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing 400045, PR China
| | - Faguo Kuang
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing 400045, PR China
| | - Jian Zhou
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing 400045, PR China.
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Mostafa YS, Alamri SA, Hashem M, Nafady NA, Abo-Elyousr KA, Mohamed ZA. Thermostable Cellulase Biosynthesis from Paenibacillus alvei and its Utilization in Lactic Acid Production by Simultaneous Saccharification and Fermentation. Open Life Sci 2020; 15:185-197. [PMID: 33987475 PMCID: PMC8114780 DOI: 10.1515/biol-2020-0019] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2019] [Accepted: 12/18/2019] [Indexed: 02/02/2023] Open
Abstract
Cellulosic date palm wastes may have beneficial biotechnological applications for eco-friendly utilization. This study reports the isolation of thermophilic cellulase-producing bacteria and their application in lactic acid production using date palm leaves. The promising isolate was identified as Paenibacillus alvei by 16S rRNA gene sequencing. Maximum cellulase production was acquired using alkaline treated date palm leaves (ATDPL) at 48 h and yielded 4.50 U.mL-1 FPase, 8.11 U.mL-1 CMCase, and 2.74 U.mL-1 β-glucosidase. The cellulase activity was optimal at pH 5.0 and 50°C with good stability at a wide temperature (40-70°C) and pH (4.0-7.0) range, demonstrating its suitability in simultaneous saccharification and fermentation. Lactic acid fermentation was optimized at 4 days, pH 5.0, 50°C, 6.0% cellulose of ATDPL, 30 FPU/ g cellulose, 1.0 g. L-1 Tween 80, and 5.0 g. L-l yeast extract using Lactobacillus delbrueckii. The conversion efficiency of lactic acid from the cellulose of ATDPL was 98.71%, and the lactic acid productivity was 0.719 g. L-1 h-1. Alkaline treatment exhibited a valuable effect on the production of cellulases and lactic acid by reducing the lignin content and cellulose crystallinity. The results of this study offer a credible procedure for using date palm leaves for microbial industrial applications.
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Affiliation(s)
- Yasser S. Mostafa
- King Khalid University, Faculty of Science, Biology Department, AbhaSaudi Arabia
| | - Saad A. Alamri
- King Khalid University, Faculty of Science, Biology Department, AbhaSaudi Arabia
- Prince Sultan Bin Abdulaziz Center for Environmental and Tourism Research and Studies, King Khalid University, AbhaSaudi Arabia
| | - Mohamed Hashem
- King Khalid University, Faculty of Science, Biology Department, AbhaSaudi Arabia
- Assiut University, Faculty of Science, Botany and Microbiology Department, Assiut, Egypt
| | - Nivien A. Nafady
- Assiut University, Faculty of Science, Botany and Microbiology Department, Assiut, Egypt
| | | | - Zakaria A. Mohamed
- King Abdulaziz University, Faculty of Meteorology, Environmental and Arid Land Agriculture, Department of Arid Land Agriculture, JeddahSaudi Arabia
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20
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Purahong W, Sadubsarn D, Tanunchai B, Wahdan SFM, Sansupa C, Noll M, Wu YT, Buscot F. First Insights into the Microbiome of a Mangrove Tree Reveal Significant Differences in Taxonomic and Functional Composition among Plant and Soil Compartments. Microorganisms 2019; 7:microorganisms7120585. [PMID: 31756976 PMCID: PMC6955992 DOI: 10.3390/microorganisms7120585] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2019] [Revised: 11/06/2019] [Accepted: 11/14/2019] [Indexed: 12/17/2022] Open
Abstract
Mangrove forest trees play important ecological functions at the interface between terrestrial and marine ecosystems. However, despite playing crucial roles in plant health and productivity, there is little information on microbiomes of the tree species in mangrove ecosystems. Thus, in this study we aimed to characterize the microbiome in soil (rhizosphere) and plant (root, stem, and leaf endosphere) compartments of the widely distributed mangrove tree Rhizophora stylosa. Surprisingly, bacterial operational taxonomic units (OTUs) were only confidently detected in rhizosphere soil, while fungal OTUs were detected in all soil and plant compartments. The major detected bacterial phyla were affiliated to Proteobacteria, Actinobacteria, Planctomycetes, and Chloroflexi. Several nitrogen-fixing bacterial OTUs were detected, and the presence of nitrogen-fixing bacteria was confirmed by nifH gene based-PCR in all rhizosphere soil samples, indicating their involvement in N acquisition in the focal mangrove ecosystem. We detected taxonomically (54 families, 83 genera) and functionally diverse fungi in the R. stylosa mycobiome. Ascomycota (mainly Dothideomycetes, Eurotiomycetes, Sordariomycetes) were most diverse in the mycobiome, accounting for 86% of total detected fungal OTUs. We found significant differences in fungal taxonomic and functional community composition among the soil and plant compartments. We also detected significant differences in fungal OTU richness (p < 0.002) and community composition (p < 0.001) among plant compartments. The results provide the first information on the microbiome of rhizosphere soil to leaf compartments of mangrove trees and associated indications of ecological functions in mangrove ecosystems.
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Affiliation(s)
- Witoon Purahong
- Department of Soil Ecology, UFZ-Helmholtz Centre for Environmental Research, 06120 Halle (Saale), Germany; (D.S.); (B.T.); (S.F.M.W.); (C.S.); (F.B.)
- Correspondence: (W.P.); (Y.-T.W.)
| | - Dolaya Sadubsarn
- Department of Soil Ecology, UFZ-Helmholtz Centre for Environmental Research, 06120 Halle (Saale), Germany; (D.S.); (B.T.); (S.F.M.W.); (C.S.); (F.B.)
- Department of Bio and Process Engineering, Faculty of Medical Life and Science, Furtwangen University, 78054 VS-Schwenningen, Germany
| | - Benjawan Tanunchai
- Department of Soil Ecology, UFZ-Helmholtz Centre for Environmental Research, 06120 Halle (Saale), Germany; (D.S.); (B.T.); (S.F.M.W.); (C.S.); (F.B.)
| | - Sara Fareed Mohamed Wahdan
- Department of Soil Ecology, UFZ-Helmholtz Centre for Environmental Research, 06120 Halle (Saale), Germany; (D.S.); (B.T.); (S.F.M.W.); (C.S.); (F.B.)
- Department of Botany, Faculty of Science, Suez Canal University, 41522 Ismailia, Egypt
| | - Chakriya Sansupa
- Department of Soil Ecology, UFZ-Helmholtz Centre for Environmental Research, 06120 Halle (Saale), Germany; (D.S.); (B.T.); (S.F.M.W.); (C.S.); (F.B.)
- Biology Department, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
- Graduate School, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Matthias Noll
- Institute for Bioanalysis, Coburg University of Applied Sciences and Arts, 96450 Coburg, Germany;
| | - Yu-Ting Wu
- Department of Forestry, National Pingtung University of Science and Technology, Pingtung 91201, Taiwan
- Correspondence: (W.P.); (Y.-T.W.)
| | - François Buscot
- Department of Soil Ecology, UFZ-Helmholtz Centre for Environmental Research, 06120 Halle (Saale), Germany; (D.S.); (B.T.); (S.F.M.W.); (C.S.); (F.B.)
- German Centre for Integrative Biodiversity Research (iDiv), 04103 Leipzig, Germany
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