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Pleyer D, Griebler C, Winter C. Virus production in shallow groundwater at the bank of the Danube River. PLoS One 2024; 19:e0306346. [PMID: 39208231 PMCID: PMC11361564 DOI: 10.1371/journal.pone.0306346] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2023] [Accepted: 06/14/2024] [Indexed: 09/04/2024] Open
Abstract
Viruses play a crucial role in regulating prokaryotic populations, yet their impact on subsurface environments, specifically groundwater habitats, remains poorly understood. In this study, we employed the virus-dilution approach to measure lytic virus production rates in shallow groundwater located near the city of Vienna (Austria) during the period from July-November 2020. Physico-chemical parameters (pH, electrical conductivity, water temperature, concentration of dissolved oxygen), prokaryotic, and viral abundance, and viral decay rates were monitored as well. Our findings revealed low virus-to-prokaryote ratios varying between 0.9-3.9 throughout the study period and a lack of correlation between prokaryotic and viral abundance in groundwater. Virus production rates varied between 9-12% of viral abundance h-1 in July-August and between 34-36% of viral abundance h-1 in October-November. Seasonal variations in virus production rates were found to be correlated with electrical conductivity, revealing ~3.5 times higher virus production rates during periods with high electrical conductivity and low groundwater recharge in October-November compared to July-August with higher groundwater recharge and lower electrical conductivity. Our data indicate that groundwater recharge disrupts the balance between virus and prokaryotic host communities, resulting in a deficiency of suitable prokaryotic host cells for viral proliferation.
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Affiliation(s)
- Daniel Pleyer
- Department of Functional and Evolutionary Ecology, University of Vienna, Vienna, Austria
| | - Christian Griebler
- Department of Functional and Evolutionary Ecology, University of Vienna, Vienna, Austria
| | - Christian Winter
- Department of Functional and Evolutionary Ecology, University of Vienna, Vienna, Austria
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Wang H, Knabe D, Engelhardt I, Droste B, Rohns HP, Stumpp C, Ho J, Griebler C. Dynamics of pathogens and fecal indicators during riverbank filtration in times of high and low river levels. WATER RESEARCH 2022; 209:117961. [PMID: 34923443 DOI: 10.1016/j.watres.2021.117961] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2021] [Revised: 11/25/2021] [Accepted: 12/08/2021] [Indexed: 06/14/2023]
Abstract
Riverbank filtration is an established and quantitatively important approach to mine high-quality raw water for drinking water production. Bacterial fecal indicators are routinely used to monitor hygienic raw water quality, however, their applicability in viral contamination has been questioned repeatedly. Additionally, there are concerns that the increasing frequency and intensity of meteorological and hydrological events, i.e., heavy precipitation and droughts leading to high and low river levels, may impair riverbank filtration performance. In this study, we explored the removal of adenovirus compared with several commonly used bacterial and viral water quality indicators during different river levels. In a seasonal study, water from the Rhine River, a series of groundwater monitoring wells, and a production well were regularly collected and analyzed for adenovirus, coliphages, E. coli, C. perfringens, coliform bacteria, the total number of prokaryotic cells (TCC), and the number of virus-like particles (TVPC) using molecular and cultivation-based assays. Additionally, basic physico-chemical parameters, including temperature, pH, dissolved organic carbon, and nutrients, were measured. The highest log10 reduction during the >72 m of riverbank filtration from the river channel to the production well was observed for coliforms (>3.7 log10), followed by E. coli (>3.4 log10), somatic coliphages (>3.1 log10), C. perfringens (>2.5 log10), and F+ coliphages (>2.1 log10) at high river levels. Adenovirus decreased by 1.6-3.1 log units in the first monitoring well (>32 m) and was not detected in further distant wells. The highest removal efficiency of adenovirus and most other viral and bacterial fecal indicators was achieved during high river levels, which were characterized by increased numbers of pathogens and indicators. During low river levels, coliforms and C. perfringens were occasionally present in raw water at the production well. Adenovirus, quantified via droplet digital PCR, correlated with E. coli, somatic coliphages, TCC, TVPC, pH, and DOC at high river levels. At low river levels, adenoviruses correlated with coliforms, TVPC, pH, and water travel time. We conclude that although standard fecal indicators are insufficient for assessing hygienic raw water quality, a combination of E. coli, coliforms and somatic coliphages can assess riverbank filtration performance in adenovirus removal. Furthermore, effects of extreme hydrological events should be studied on an event-to-event basis at high spatial and temporal resolutions. Finally, there is an urgent need for a lower limit of detection for pathogenic viruses in natural waters. Preconcentration of viral particles from larger water volumes (>100 L) constitutes a promising strategy.
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Affiliation(s)
- He Wang
- University of Vienna, Department of Functional and Evolutionary Ecology, Division of Limnology, Djerassiplatz 1, 1030 Vienna, Austria
| | - Dustin Knabe
- Technische Universität Berlin, Institute for Applied Geosciences, Chair for Hydrogeology, Ernst-Reuter-Platz 1, 10587 Berlin, Germany
| | - Irina Engelhardt
- Technische Universität Berlin, Institute for Applied Geosciences, Chair for Hydrogeology, Ernst-Reuter-Platz 1, 10587 Berlin, Germany
| | - Björn Droste
- Waterwork Düsseldorf, Himmelgeister Strasse 325, 40225 Düsseldorf, Germany
| | - Hans-Peter Rohns
- Waterwork Düsseldorf, Himmelgeister Strasse 325, 40225 Düsseldorf, Germany
| | - Christine Stumpp
- University of Natural Resources and Life Sciences, Vienna, Institute for Soil Physics and Rural Water Management, Muthgasse 18, 1190 Vienna, Austria
| | - Johannes Ho
- DVGW-Technologiezentrum Wasser (TZW), Karlsruher Straße 84, D-76139 Karlsruhe, Germany
| | - Christian Griebler
- University of Vienna, Department of Functional and Evolutionary Ecology, Division of Limnology, Djerassiplatz 1, 1030 Vienna, Austria.
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Contaminant concentration versus flow velocity: drivers of biodegradation and microbial growth in groundwater model systems. Biodegradation 2018; 29:211-232. [PMID: 29492777 PMCID: PMC5943387 DOI: 10.1007/s10532-018-9824-2] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2017] [Accepted: 02/23/2018] [Indexed: 11/07/2022]
Abstract
Aromatic hydrocarbons belong to the most abundant contaminants in groundwater systems. They can serve as carbon and energy source for a multitude of indigenous microorganisms. Predictions of contaminant biodegradation and microbial growth in contaminated aquifers are often vague because the parameters of microbial activity in the mathematical models used for predictions are typically derived from batch experiments, which don’t represent conditions in the field. In order to improve our understanding of key drivers of natural attenuation and the accuracy of predictive models, we conducted comparative experiments in batch and sediment flow-through systems with varying concentrations of contaminant in the inflow and flow velocities applying the aerobic Pseudomonas putida strain F1 and the denitrifying Aromatoleum aromaticum strain EbN1. We followed toluene degradation and bacterial growth by measuring toluene and oxygen concentrations and by direct cell counts. In the sediment columns, the total amount of toluene degraded by P. putida F1 increased with increasing source concentration and flow velocity, while toluene removal efficiency gradually decreased. Results point at mass transfer limitation being an important process controlling toluene biodegradation that cannot be assessed with batch experiments. We also observed a decrease in the maximum specific growth rate with increasing source concentration and flow velocity. At low toluene concentrations, the efficiencies in carbon assimilation within the flow-through systems exceeded those in the batch systems. In all column experiments the number of attached cells plateaued after an initial growth phase indicating a specific “carrying capacity” depending on contaminant concentration and flow velocity. Moreover, in all cases, cells attached to the sediment dominated over those in suspension, and toluene degradation was performed practically by attached cells only. The observed effects of varying contaminant inflow concentration and flow velocity on biodegradation could be captured by a reactive-transport model. By monitoring both attached and suspended cells we could quantify the release of new-grown cells from the sediments to the mobile aqueous phase. Studying flow velocity and contaminant concentrations as key drivers of contaminant transformation in sediment flow-through microcosms improves our system understanding and eventually the prediction of microbial biodegradation at contaminated sites.
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