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Wang R, Kou Q, Dou L. LIT-Unet: a lightweight and effective model for medical image segmentation. Radiol Phys Technol 2024:10.1007/s12194-024-00844-4. [PMID: 39302610 DOI: 10.1007/s12194-024-00844-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2024] [Revised: 08/31/2024] [Accepted: 09/04/2024] [Indexed: 09/22/2024]
Abstract
This study aimed to design a simple and efficient automatic segmentation model for medical images, so as to facilitate doctors to make more accurate diagnosis and treatment plan. A hybrid lightweight network LIT-Unet with symmetric encoder-decoder U-shaped architecture is proposed. Synapse multi-organ segmentation dataset and automated cardiac diagnosis challenge (ACDC) dataset were used to test the segmentation performance of the method. Two indexes, Dice similarity coefficient (DSC ↑) and 95% Hausdorff distance (HD95 ↓), were used to evaluate and compare the segmentation ability with the current advanced methods. Ablation experiments were conducted to demonstrate the lightweight nature and effectiveness of our model. For Synapse dataset, our model achieves a higher DSC score (80.40%), an improvement of 3.8% over the typical hybrid model (TransUnet). The 95 HD value is low at 20.67%. For ACDC dataset, LIT-Unet achieves the optimal average DSC (%) of 91.84 compared with other networks listed. Compared to patch expanding, the DSC of our model is intuitively improved by 1.62% with the help of deformable token merging (DTM). These results show that the proposed hierarchical LIT-Unet can achieve significant accuracy and is expected to provide a reliable basis for clinical diagnosis and treatment.
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Affiliation(s)
- Ru Wang
- School of Information and Control Engineering, China University of Mining and Technology, Xuzhou, 221116, China
- Department of Radiology, Xuzhou Central Hospital, Xuzhou, 221009, China
| | - Qiqi Kou
- School of Computer Science and Technology, China University of Mining and Technology, Xuzhou, 221116, China
| | - Lina Dou
- Department of Radiology, Xuzhou Central Hospital, Xuzhou, 221009, China.
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Kamimura S, Mitobe Y, Nakamura K, Matsuda K, Kanemura Y, Kanoto M, Futakuchi M, Sonoda Y. Association of ADC of hyperintense lesions on FLAIR images with TERT promoter mutation status in glioblastoma IDH wild type. Surg Neurol Int 2024; 15:108. [PMID: 38628517 PMCID: PMC11021064 DOI: 10.25259/sni_63_2024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2024] [Accepted: 03/03/2024] [Indexed: 04/19/2024] Open
Abstract
Background Although mutations in telomerase reverse transcriptase (TERT) promoter (TERTp) are the most common alterations in glioblastoma (GBM), predicting TERTp mutation status by preoperative imaging is difficult. We determined whether tumour-surrounding hyperintense lesions on fluid-attenuated inversion recovery (FLAIR) were superior to those of contrast-enhanced lesions (CELs) in assessing TERTp mutation status using magnetic resonance imaging (MRI). Methods This retrospective study included 114 consecutive patients with primary isocitrate dehydrogenase (IDH)-wild-type GBM. The apparent diffusion coefficient (ADC) and volume of CELs and FLAIR hyperintense lesions (FHLs) were determined, and the correlation between MRI features and TERTp mutation status was analyzed. In a subset of cases, FHLs were histopathologically analyzed to determine the correlation between tumor cell density and ADC. Results TERTp mutations were present in 77 (67.5%) patients. The minimum ADC of FHLs was significantly lower in the TERTp-mutant group than in the TERTp-wild-type group (mean, 958.9 × 10-3 and 1092.1 × 10-3 mm2/s, respectively, P < 0.01). However, other MRI features, such as CEL and FHL volumes, minimum ADC of CELs, and FHL/CEL ratio, were not significantly different between the two groups. Histopathologic analysis indicated high tumor cell density in FHLs with low ADC. Conclusion The ADC of FHLs was significantly lower in IDH-wild-type GBM with TERTp mutations, suggesting that determining the ADC of FHLs on preoperative MRI might be helpful in predicting TERTp mutation status and surgical planning.
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Affiliation(s)
- Shigeru Kamimura
- Department of Neurosurgery, Yamagata University, Yamagata, Japan
| | - Yuta Mitobe
- Department of Neurosurgery, Yamagata University, Yamagata, Japan
| | - Kazuki Nakamura
- Department of Neurosurgery, Yamagata University, Yamagata, Japan
| | | | - Yonehiro Kanemura
- Department of Biomedical Research and Innovation, National Hospital Organization Osaka National Hospital, Osaka, Japan
| | - Masafumi Kanoto
- Department of Radiology, Division of Diagnostic Radiology, Yamagata University, Yamagata, Japan
| | - Mitsuru Futakuchi
- Department of Pathological Diagnostics, Yamagata University, Yamagata, Japan
| | - Yukihiko Sonoda
- Department of Neurosurgery, Yamagata University, Yamagata, Japan
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Yoon J, Baek N, Yoo RE, Choi SH, Kim TM, Park CK, Park SH, Won JK, Lee JH, Lee ST, Choi KS, Lee JY, Hwang I, Kang KM, Yun TJ. Added value of dynamic contrast-enhanced MR imaging in deep learning-based prediction of local recurrence in grade 4 adult-type diffuse gliomas patients. Sci Rep 2024; 14:2171. [PMID: 38273075 PMCID: PMC10810891 DOI: 10.1038/s41598-024-52841-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2023] [Accepted: 01/24/2024] [Indexed: 01/27/2024] Open
Abstract
Local recurrences in patients with grade 4 adult-type diffuse gliomas mostly occur within residual non-enhancing T2 hyperintensity areas after surgical resection. Unfortunately, it is challenging to distinguish non-enhancing tumors from edema in the non-enhancing T2 hyperintensity areas using conventional MRI alone. Quantitative DCE MRI parameters such as Ktrans and Ve convey permeability information of glioblastomas that cannot be provided by conventional MRI. We used the publicly available nnU-Net to train a deep learning model that incorporated both conventional and DCE MRI to detect the subtle difference in vessel leakiness due to neoangiogenesis between the non-recurrence area and the local recurrence area, which contains a higher proportion of high-grade glioma cells. We found that the addition of Ve doubled the sensitivity while nonsignificantly decreasing the specificity for prediction of local recurrence in glioblastomas, which implies that the combined model may result in fewer missed cases of local recurrence. The deep learning model predictive of local recurrence may enable risk-adapted radiotherapy planning in patients with grade 4 adult-type diffuse gliomas.
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Affiliation(s)
- Jungbin Yoon
- Department of Radiology, Seoul National University College of Medicine, 101, Daehangno, Jongno-gu, Seoul, 03080, Republic of Korea
| | - Nayeon Baek
- Department of Radiology, Seoul National University College of Medicine, 101, Daehangno, Jongno-gu, Seoul, 03080, Republic of Korea
| | - Roh-Eul Yoo
- Department of Radiology, Seoul National University College of Medicine, 101, Daehangno, Jongno-gu, Seoul, 03080, Republic of Korea.
- Department of Radiology, Seoul National University Hospital, Seoul, Republic of Korea.
| | - Seung Hong Choi
- Department of Radiology, Seoul National University College of Medicine, 101, Daehangno, Jongno-gu, Seoul, 03080, Republic of Korea.
- Department of Radiology, Seoul National University Hospital, Seoul, Republic of Korea.
- Center for Nanoparticle Research, Institute for Basic Science (IBS), Seoul, Republic of Korea.
- School of Chemical and Biological Engineering, Seoul National University, 1, Gwanak-ro, Gwanak-gu, Seoul, 302-909, Republic of Korea.
| | - Tae Min Kim
- Department of Internal Medicine, Cancer Research Institute, Seoul National University College of Medicine, Seoul, Republic of Korea
| | - Chul-Kee Park
- Department of Neurosurgery, Biomedical Research Institute, Seoul National University College of Medicine, Seoul, Republic of Korea
| | - Sung-Hye Park
- Department of Pathology, Seoul National University College of Medicine, Seoul, Republic of Korea
| | - Jae-Kyung Won
- Department of Pathology, Seoul National University College of Medicine, Seoul, Republic of Korea
| | - Joo Ho Lee
- Department of Radiation Oncology, Cancer Research Institute, Seoul National University College of Medicine, Seoul, Republic of Korea
| | - Soon Tae Lee
- Department of Neurology, Seoul National University College of Medicine, Seoul, Republic of Korea
| | - Kyu Sung Choi
- Department of Radiology, Seoul National University Hospital, Seoul, Republic of Korea
| | - Ji Ye Lee
- Department of Radiology, Seoul National University Hospital, Seoul, Republic of Korea
| | - Inpyeong Hwang
- Department of Radiology, Seoul National University Hospital, Seoul, Republic of Korea
| | - Koung Mi Kang
- Department of Radiology, Seoul National University Hospital, Seoul, Republic of Korea
| | - Tae Jin Yun
- Department of Radiology, Seoul National University Hospital, Seoul, Republic of Korea
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