A Deep Learning Framework for Image Super-Resolution for Late Gadolinium Enhanced Cardiac MRI

Deep learning architecture for 3D image super-resolution of late gadolinium enhanced cardiac MRI

Purpose

High-resolution late gadolinium enhanced (LGE) cardiac magnetic resonance imaging (MRI) volumes are difficult to acquire due to the limitations of the maximal breath-hold time achievable by the patient. This results in anisotropic 3D volumes of the heart with high in-plane resolution, but low-through-plane resolution. Thus, we propose a 3D convolutional neural network (CNN) approach to improve the through-plane resolution of the cardiac LGE-MRI volumes.

Approach

We present a 3D CNN-based framework with two branches: a super-resolution branch to learn the mapping between low-resolution and high-resolution LGE-MRI volumes, and a gradient branch that learns the mapping between the gradient map of low-resolution LGE-MRI volumes and the gradient map of high-resolution LGE-MRI volumes. The gradient branch provides structural guidance to the CNN-based super-resolution framework. To assess the performance of the proposed CNN-based framework, we train two CNN models with and without gradient guidance, namely, dense deep back-projection network (DBPN) and enhanced deep super-resolution network. We train and evaluate our method on the 2018 atrial segmentation challenge dataset. Additionally, we also evaluate these trained models on the left atrial and scar quantification and segmentation challenge 2022 dataset to assess their generalization ability. Finally, we investigate the effect of the proposed CNN-based super-resolution framework on the 3D segmentation of the left atrium (LA) from these cardiac LGE-MRI image volumes.

Results

Experimental results demonstrate that our proposed CNN method with gradient guidance consistently outperforms bicubic interpolation and the CNN models without gradient guidance. Furthermore, the segmentation results, evaluated using Dice score, obtained using the super-resolved images generated by our proposed method are superior to the segmentation results obtained using the images generated by bicubic interpolation (p < 0.01 ) and the CNN models without gradient guidance (p < 0.05 ).

Conclusion

The presented CNN-based super-resolution method with gradient guidance improves the through-plane resolution of the LGE-MRI volumes and the structure guidance provided by the gradient branch can be useful to aid the 3D segmentation of cardiac chambers, such as LA, from the 3D LGE-MRI images.

A 3D Convolutional Neural Network with Gradient Guidance for Image Super-Resolution of Late Gadolinium Enhanced Cardiac MRI

In this paper, we describe a 3D convolutional neural network (CNN) framework to compute and generate super-resolution late gadolinium enhanced (LGE) cardiac magnetic resonance imaging (MRI) images. The proposed CNN framework consists of two branches: a super-resolution branch with a 3D dense deep back-projection network (DBPN) as the backbone to learn the mapping of low-resolution LGE cardiac volumes to high-resolution LGE cardiac volumes, and a gradient branch that learns the mapping of the gradient map of low resolution LGE cardiac volumes to the gradient map of their high-resolution counterparts. The gradient branch of the CNN provides additional cardiac structure information to the super-resolution branch to generate structurally more accurate super-resolution LGE MRI images. We conducted our experiments on the 2018 atrial segmentation challenge dataset. The proposed CNN framework achieved a mean peak signal-to-noise ratio (PSNR) of 30.91 and 25.66 and a mean structural similarity index measure (SSIM) of 0.91 and 0.75 on training the model on low-resolution images downsamp led by a scale factor of 2 and 4, respectively.