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Kang T, Choi YJ, Kim J, Park HJ, Jang WJ. Whole genome sequence and comparative genomic analysis of novel Rickettsia koreansis strain CNH17-7 isolated from human. Eur J Clin Microbiol Infect Dis 2024:10.1007/s10096-024-04876-x. [PMID: 39031268 DOI: 10.1007/s10096-024-04876-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2024] [Accepted: 06/15/2024] [Indexed: 07/22/2024]
Abstract
PURPOSE To determine the genomic feature of novel spotted fever-causing Rickettsia koreansis strain CNH17-7, which is different from R. japonica that is a causative agent for Japanese spotted fever (JSF), and to perform its comparative genomic analysis. METHODS Whole genome sequencing (WGS) was performed on R. koreansis strain CNH17-7 by using the Illumina Miseq system. After WGS, assembly and annotation were done by SPAdes. Then, its genomic features were compared with 19 different Rickettsia species. Based on the average nucleotide identity (ANI) value, an unweighted pair group method with an arithmetic mean (UPGMA) dendrogram was generated. Following the dendrogram analysis, pan-and core-genome analysis was performed. Then additional comparative analyses with two genetically closest Rickettsia species were conducted based on gene repertoire. RESULTS R. koreansis strain CNH17-7 has a chromosome consisting of 1,392,633 bp with GC content of 32.4%. The ANI-derived UPGMA showed that R. koreansis strain CNH17-7 is genetically close to R. japonica YH and R. heilongjiangensis 054 but is distinctively differentiated. The ANI value of R. koreansis strain CNH17-7 to R. japonica YH and R. heilongjiangensis 054 are 98.14% and 98.04% respectively, indicating R. koreansis strain CNH17-7 is sufficient to be classified as a new species. Other than ANI, R. koreansis strain CNH17-7 also contains novel CDS and its COG functional category proportion which is distinct compared to R. japonica YH and R. heilongjiangensis 054. CONCLUSION We have revealed genomic features of the novel R. koreansis strain CNH17-7. Hence, we propose R. koreansis strain CNH17-7 as new Rickettsia species.
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Affiliation(s)
- Taeuk Kang
- Department of Microbiology, Konkuk University School of Medicine, College of Medicine, 120 Neungdong-ro, Gwangjin-gu, Seoul, 05029, Republic of Korea
- Research Institute of Medical Science, Konkuk University School of Medicine, 120 Neungdong-ro, Gwangjin-gu, Seoul, 05029, Republic of Korea
| | - Yeon-Joo Choi
- Department of Microbiology, Konkuk University School of Medicine, College of Medicine, 120 Neungdong-ro, Gwangjin-gu, Seoul, 05029, Republic of Korea
- Research Institute of Medical Science, Konkuk University School of Medicine, 120 Neungdong-ro, Gwangjin-gu, Seoul, 05029, Republic of Korea
| | - Jeoungyeon Kim
- Department of Microbiology, Konkuk University School of Medicine, College of Medicine, 120 Neungdong-ro, Gwangjin-gu, Seoul, 05029, Republic of Korea
- Research Institute of Medical Science, Konkuk University School of Medicine, 120 Neungdong-ro, Gwangjin-gu, Seoul, 05029, Republic of Korea
| | - Hye-Jin Park
- Department of Microbiology, Konkuk University School of Medicine, College of Medicine, 120 Neungdong-ro, Gwangjin-gu, Seoul, 05029, Republic of Korea
- Research Institute of Medical Science, Konkuk University School of Medicine, 120 Neungdong-ro, Gwangjin-gu, Seoul, 05029, Republic of Korea
| | - Won-Jong Jang
- Department of Microbiology, Konkuk University School of Medicine, College of Medicine, 120 Neungdong-ro, Gwangjin-gu, Seoul, 05029, Republic of Korea.
- Research Institute of Medical Science, Konkuk University School of Medicine, 120 Neungdong-ro, Gwangjin-gu, Seoul, 05029, Republic of Korea.
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Seo JY, Park JS, Lee HI, Ju JW. Molecular Identification of Spotted Fever Group Rickettsiae in Ticks in the Republic of Korea. Pathogens 2024; 13:575. [PMID: 39057802 PMCID: PMC11280320 DOI: 10.3390/pathogens13070575] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2024] [Revised: 07/03/2024] [Accepted: 07/08/2024] [Indexed: 07/28/2024] Open
Abstract
The Rickettsia species transmitted by ticks are mostly classified within the spotted fever group rickettsiae (SFGR), which causes tick-borne rickettsiosis. Although efforts have been made to investigate their prevalence in the Republic of Korea (ROK), research has been limited to certain areas. Furthermore, the pooling method for ticks does not fully reflect the exact infection rate. Therefore, we aimed to perform molecular identification of SFGR in ticks to elucidate the current prevalence of tick-borne rickettsiosis in the ROK. The SFGR of ticks was identified using polymerase chain reaction targeting the 17 kDa antigen, ompA, and gltA, followed by sequencing for species identification and phylogenetic analysis. In total, 302 ticks belonging to four species (Haemaphysalis flava, H. longicornis, Ixodes nipponensis, and Amblyomma testudinarium) were collected between April and November 2022. The overall SFGR infection rate was 26.8% (81/302 patients). Both adult and nymphal ticks and the SFGR infection rate increased during April-May, reaching their peaks in June, followed by a marked decline in August and July, respectively. Phylogenetic analysis revealed three species (R. monacensis, R. heilongjiangensis, and Candidatus R. jingxinensis) of SFGR. Thus, our results emphasize the importance of tick surveys for the prevention and management of tick-borne rickettsiosis.
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Affiliation(s)
| | | | | | - Jung-Won Ju
- Division of Vectors and Parasitic Diseases, Korea Disease Control and Prevention Agency, 187 Osongsaengmyeong 2-ro, Osong-eup, Heungdeok-gu, Cheongju 28159, Chungbuk, Republic of Korea
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Kim KG, Hwang DJ, Park JW, Ryu MG, Kim Y, Yang SJ, Lee JE, Lee GS, Lee JH, Park JS, Seo JM, Kim SH. Distribution and pathogen prevalence of field-collected ticks from south-western Korea: a study from 2019 to 2022. Sci Rep 2024; 14:12336. [PMID: 38811622 PMCID: PMC11136998 DOI: 10.1038/s41598-024-61126-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2023] [Accepted: 05/02/2024] [Indexed: 05/31/2024] Open
Abstract
Hard ticks are known vectors of various pathogens, including the severe fever with thrombocytopenia syndrome virus, Rickettsia spp., Coxiella burnetii, Borrelia spp., Anaplasma phagocytophilum, and Ehrlichia spp. This study aims to investigate the distribution and prevalence of tick-borne pathogens in southwestern Korea from 2019 to 2022. A total of 13,280 ticks were collected during the study period, with H. longicornis accounting for 86.1% of the collected ticks. H. flava, I. nipponensis and A. testudinarium comprised 9.4%, 3.6%, and 0.8% of the ticks, respectively. Among 983 pools tested, Rickettsia spp. (216 pools, 1.6% MIR) were the most prevalent pathogens across all tick species, with R. japonica and R. monacensis frequently detected in I. nipponensis and Haemaphysalis spp., respectively. Borrelia spp. (28 pools, 0.2% MIR) were predominantly detected in I. nipponensis (27 pools, 13.8% MIR, P < 0.001). Co-infections, mainly involving Rickettsia monacensis and Borrelia afzelii, were detected in I. nipponensis. Notably, this study identified R. monacensis for the first time in A. testudinarium in South Korea. These findings offer valuable insights into the tick population and associated pathogens in the region, underscoring the importance of tick-borne disease surveillance and prevention measures.
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Affiliation(s)
- Kwang Gon Kim
- Division of Infectious Disease Investigation, Health and Environment Research Institute of Gwangju, 584 Mugindae-ro, Seo-gu, Gwangju, 61954, Republic of Korea.
| | - Da Jeong Hwang
- Division of Infectious Disease Investigation, Health and Environment Research Institute of Gwangju, 584 Mugindae-ro, Seo-gu, Gwangju, 61954, Republic of Korea
| | - Jung Wook Park
- Division of Infectious Disease Investigation, Health and Environment Research Institute of Gwangju, 584 Mugindae-ro, Seo-gu, Gwangju, 61954, Republic of Korea
| | - Mi Geum Ryu
- Division of Infectious Disease Investigation, Health and Environment Research Institute of Gwangju, 584 Mugindae-ro, Seo-gu, Gwangju, 61954, Republic of Korea
| | - Yujin Kim
- Division of Infectious Disease Investigation, Health and Environment Research Institute of Gwangju, 584 Mugindae-ro, Seo-gu, Gwangju, 61954, Republic of Korea
| | - So-Jin Yang
- Division of Infectious Disease Investigation, Health and Environment Research Institute of Gwangju, 584 Mugindae-ro, Seo-gu, Gwangju, 61954, Republic of Korea
| | - Ji-Eun Lee
- Division of Infectious Disease Investigation, Health and Environment Research Institute of Gwangju, 584 Mugindae-ro, Seo-gu, Gwangju, 61954, Republic of Korea
| | - Gi Seong Lee
- Division of Infectious Disease Investigation, Health and Environment Research Institute of Gwangju, 584 Mugindae-ro, Seo-gu, Gwangju, 61954, Republic of Korea
| | - Ju Hye Lee
- Division of Infectious Disease Investigation, Health and Environment Research Institute of Gwangju, 584 Mugindae-ro, Seo-gu, Gwangju, 61954, Republic of Korea
| | - Ji Sun Park
- Division of Infectious Disease Investigation, Health and Environment Research Institute of Gwangju, 584 Mugindae-ro, Seo-gu, Gwangju, 61954, Republic of Korea
| | - Jung Mi Seo
- Division of Infectious Disease Investigation, Health and Environment Research Institute of Gwangju, 584 Mugindae-ro, Seo-gu, Gwangju, 61954, Republic of Korea
| | - Sun-Hee Kim
- Division of Infectious Disease Investigation, Health and Environment Research Institute of Gwangju, 584 Mugindae-ro, Seo-gu, Gwangju, 61954, Republic of Korea.
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Matulis GA, Sakolvaree J, Boldbaatar B, Cleary N, Takhampunya R, Poole-Smith BK, Lilak AA, Altantogtokh D, Tsogbadrakh N, Chanarat N, Youngdech N, Lindroth EJ, Fiorenzano JM, Letizia AG, von Fricken ME. Applying next generation sequencing to detect tick-pathogens in Dermacentor nuttalli, Ixodes persulcatus, and Hyalomma asiaticum collected from Mongolia. Ticks Tick Borne Dis 2023; 14:102203. [PMID: 37290396 DOI: 10.1016/j.ttbdis.2023.102203] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2022] [Revised: 05/11/2023] [Accepted: 05/21/2023] [Indexed: 06/10/2023]
Abstract
Ticks and tick-borne diseases represent major threats to the public health of the Mongolian population, of which an estimated 26% live a traditional nomadic pastoralist lifestyle that puts them at increased risk for exposure. Ticks were collected by dragging and removal from livestock in Khentii, Selenge, Tuv, and Umnugovi aimags (provinces) during March-May 2020. Using next-generation sequencing (NGS) with confirmatory PCR and DNA sequencing, we sought to characterize the microbial species present in Dermacentor nuttalli (n = 98), Hyalomma asiaticum (n = 38), and Ixodes persulcatus (n = 72) tick pools. Rickettsia spp. were detected in 90.4% of tick pools, with Khentii, Selenge, and Tuv tick pools all having 100% pool positivity. Coxiella spp. were detected at an overall pool positivity rate of 60%, while Francisella spp. were detected in 20% of pools and Borrelia spp. detected in 13% of pools. Additional confirmatory testing for Rickettsia-positive pools demonstrated Rickettsia raoultii (n = 105), Candidatus Rickettsia tarasevichiae (n = 65) and R. slovaca/R. sibirica (n = 2), as well as the first report of Candidatus Rickettsia jingxinensis (n = 1) in Mongolia. For Coxiella spp. reads, most samples were identified as a Coxiella endosymbiont (n = 117), although Coxiella burnetii was detected in eight pools collected in Umnugovi. Borrelia species that were identified include Borrelia burgdorferi sensu lato (n = 3), B. garinii (n = 2), B. miyamotoi (n = 16), and B. afzelii (n = 3). All Francisella spp. reads were identified as Francisella endosymbiont species. Our findings emphasize the utility of NGS to provide baseline data across multiple tick-borne pathogen groups, which in turn can be used to inform health policy, determine regions for expanded surveillance, and guide risk mitigation strategies.
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Affiliation(s)
- Graham A Matulis
- Department of Global and Community Health, George Mason University, Fairfax, VA, USA
| | - Jira Sakolvaree
- Department of Entomology, US Army Medical Directorate of the Armed Forces Research Institute of Medical Sciences (USAMD-AFRIMS), Bangkok, Thailand
| | - Bazartseren Boldbaatar
- School of Veterinary Medicine, Mongolian University of Life Sciences, Ulaanbaatar, Mongolia
| | - Nora Cleary
- Department of Global and Community Health, George Mason University, Fairfax, VA, USA
| | - Ratree Takhampunya
- Department of Entomology, US Army Medical Directorate of the Armed Forces Research Institute of Medical Sciences (USAMD-AFRIMS), Bangkok, Thailand
| | - B Katherine Poole-Smith
- Department of Entomology, US Army Medical Directorate of the Armed Forces Research Institute of Medical Sciences (USAMD-AFRIMS), Bangkok, Thailand
| | - Abigail A Lilak
- Department of Global and Community Health, George Mason University, Fairfax, VA, USA
| | | | | | - Nitima Chanarat
- Department of Entomology, US Army Medical Directorate of the Armed Forces Research Institute of Medical Sciences (USAMD-AFRIMS), Bangkok, Thailand
| | - Nittayaphon Youngdech
- Department of Entomology, US Army Medical Directorate of the Armed Forces Research Institute of Medical Sciences (USAMD-AFRIMS), Bangkok, Thailand
| | - Erica J Lindroth
- Department of Entomology, US Army Medical Directorate of the Armed Forces Research Institute of Medical Sciences (USAMD-AFRIMS), Bangkok, Thailand
| | | | | | - Michael E von Fricken
- Department of Global and Community Health, George Mason University, Fairfax, VA, USA.
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Fracasso G, Grillini M, Grassi L, Gradoni F, Rold GD, Bertola M. Effective Methods of Estimation of Pathogen Prevalence in Pooled Ticks. Pathogens 2023; 12:pathogens12040557. [PMID: 37111443 PMCID: PMC10146257 DOI: 10.3390/pathogens12040557] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2023] [Revised: 03/29/2023] [Accepted: 04/02/2023] [Indexed: 04/09/2023] Open
Abstract
Since tick-borne diseases (TBDs) incidence, both in human and animal populations, is increasing worldwide, there is the need to assess the presence, distribution and prevalence of tick-borne pathogens. Reliable estimates on tick-borne pathogens (TBPs) prevalence represent the public health foundation to create risk maps and take effective prevention and control actions against TBDs. Tick surveillance consists of collecting and testing (usually in pools) thousands of specimens. Construction and analysis of tick pools represent a challenge due to the complexity of tick-borne pathogens and tick-borne diseases ecology. The aim of this study is to provide a practical guideline on appropriate pooling strategies and statistical analysis of infection prevalence through: (i) reporting the different pooling strategies and statistical methodologies commonly used to calculate pathogen prevalence in tick populations and (ii) practical comparison between statistical methods utilising a real dataset of infection prevalence in ticks collected in Northern Italy. Reporting detailed information on tick pool composition and size is as important as the correct TBPs prevalence estimation. Among the prevalence indexes, we suggest using maximum-likelihood estimates of pooled prevalence instead of minimum infection rate or pool positivity rate given the merits of the method and availability of software.
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Affiliation(s)
- Gerardo Fracasso
- Eco-Epidemiology Group, Department of Biomedical Sciences, Institute of Tropical Medicine, 2000 Antwerp, Belgium
- Evolutionary Ecology Group, Department of Biology, University of Antwerp, 2610 Wilrijk, Belgium
| | - Marika Grillini
- Department of Animal Medicine, Production and Health, University of Padua, 35020 Legnaro, Italy
| | - Laura Grassi
- Department of Animal Medicine, Production and Health, University of Padua, 35020 Legnaro, Italy
| | - Francesco Gradoni
- Istituto Zooprofilattico Sperimentale delle Venezie, 35020 Legnaro, Italy
| | - Graziana da Rold
- Istituto Zooprofilattico Sperimentale delle Venezie, 35020 Legnaro, Italy
| | - Michela Bertola
- Istituto Zooprofilattico Sperimentale delle Venezie, 35020 Legnaro, Italy
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Molecular Detection of Anaplasma phagocytophilum and Ehrlichia Species in Ticks Removed from Humans in the Republic of Korea. Microorganisms 2022; 10:microorganisms10061224. [PMID: 35744742 PMCID: PMC9227426 DOI: 10.3390/microorganisms10061224] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2022] [Revised: 06/09/2022] [Accepted: 06/12/2022] [Indexed: 12/10/2022] Open
Abstract
Human granulocytic anaplasmosis (HGA) and human monocytic ehrlichiosis (HME) are zoonotic tick-borne diseases transmitted via tick bites. To determine the state of human Anaplasma and Ehrlichia infections caused by tick bites in the Republic of Korea (ROK), we conducted a nationwide investigation of human cases of tick bites in 2020. A total of 180 ticks were obtained, comprising Haemaphysalis longicornis (70.0%), Amblyomma testudinarium (17.8%), Ixodes nipponensis (6.1%), H. flava (4.4%), and I. persulcatus (1.7%). In three cases (1.7%; 95% CI: 0.3-4.9), A. phagocytophilum was detected in Ixodes ticks using primers for Anaplasma-specific genes (16s rRNA, ankA, and msp4). Conversely, Ehrlichia sp. was only detected in H. longicornis, in two cases (1.1%; 95% CI: 0.1-4.0). To the best of our knowledge, this is the first record of Ehrlichia sp. in ticks parasitizing humans in the ROK. As concerns remain about the possibility of HGA and HME transmission, continuous monitoring and management of the pathogens and vectors are necessary.
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Lee H, Lee SH, Shin S, Kwak D. Molecular Identification of Borrelia spp. from Ticks in Pastures Nearby Livestock Farms in Korea. INSECTS 2021; 12:insects12111011. [PMID: 34821810 PMCID: PMC8619022 DOI: 10.3390/insects12111011] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/14/2021] [Revised: 11/05/2021] [Accepted: 11/08/2021] [Indexed: 11/28/2022]
Abstract
Simple Summary Lyme borreliosis is caused by a spirochete from the Borrelia burgdorferi sensu lato group. Borrelia afzelii and B. garinii are known to be pathogenic to humans. The main vector for Lyme borreliosis is the Ixodes tick. In this study, Borrelia infection was confirmed in Ixodes,Haemaphysalis, and Amblyomma ticks. To our knowledge Borrelia infection was first confirmed in Amblyomma testudinarium in Korea. Based on phylogenetic analysis, all sequences were aligned with B. afzelii isolates and showed a close relationship with high identity. Considering that B. afzelii causes infectious zoonotic diseases, continuous monitoring and attention are still required (although a low prevalence was recorded in this study). Abstract Ticks are vectors that spread pathogenic bacteria, viruses, and protozoa. As the number of ticks increases due to climate change, the importance of the study of tick-borne pathogens has also increased. This study was conducted to investigate the distribution of the major tick species causing Lyme borreliosis and regional differences in the prevalence of Borrelia spp. by tick species. Borrelia infection was confirmed not only in Ixodes ticks, which are the major vectors of Borrelia spp., but also in Haemaphysalis and Amblyomma ticks. PCR targeting the 5S-23S rRNA intergenic spacer region (rrf-rrl) was performed to confirm Borrelia positivity. A total of 6102 ticks (736 pools) were tested, and the proportion was Haemaphysalis longicornis nymphs and adults at 69.2%, Haemaphysalis flava nymphs and adults at 13.9%, Haemaphysalis spp. larva at 14.3%, Ixodes nipponensis at 0.8%, and Amblyomma testudinarium at 1.9%. Ixodes nipponensis showed the highest minimum infection rate (MIR: 34.00; 17 pools/50 ticks) for Borrelia spp., followed by A. testudinarium (MIR: 0.88), and H. longicornis (MIR: 0.05). In particular, to our knowledge Borrelia infection was first confirmed in A. testudinarium in Korea. As a result of phylogenetic analysis, all sequences were grouped with Borreliaafzelii isolates and showed a close relationship with high identity. Considering that B. afzelii causes infectious zoonotic diseases, continuous monitoring and attention are needed, although it has a low prevalence in this study.
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Affiliation(s)
- Haeseung Lee
- College of Veterinary Medicine, Kyungpook National University, 80 Daehak-ro, Daegu 41566, Korea;
| | - Seung-Hun Lee
- College of Veterinary Medicine, Chungbuk National University, 1 Chungdae-ro, Cheongju 28644, Korea;
| | - SungShik Shin
- College of Veterinary Medicine, Chonnam National University, 77 Yongbong-ro, Gwangju 61186, Korea;
| | - Dongmi Kwak
- College of Veterinary Medicine, Kyungpook National University, 80 Daehak-ro, Daegu 41566, Korea;
- Cardiovascular Research Institute, Kyungpook National University, 680 Gukchaebosang-ro, Daegu 41944, Korea
- Correspondence:
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Kim JY, Yi MH, Mahdi AAS, Yong TS. iSeq 100 for metagenomic pathogen screening in ticks. Parasit Vectors 2021; 14:346. [PMID: 34187542 PMCID: PMC8244152 DOI: 10.1186/s13071-021-04852-w] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2021] [Accepted: 06/16/2021] [Indexed: 12/30/2022] Open
Abstract
BACKGROUND Ticks are blood-sucking ectoparasites that play a pivotal role in the transmission of various pathogens to humans and animals. In Korea, Haemaphysalis longicornis is the predominant tick species and is recognized as the vector of pathogens causing various diseases such as babesiosis, borreliosis, rickettsiosis, and severe fever with thrombocytopenia syndrome. METHODS In this study, the targeted high-throughput sequencing of the 16S rRNA V4 region was performed using the state-of-the-art sequencing instrument, iSeq 100, to screen bacterial pathogens in H. longicornis, and the findings were compared with those using conventional PCR with specific primers. Microbiome analyses were performed with EzBioCloud, a commercially available ChunLab bioinformatics cloud platform. ANOVA-Like Differential Expression tool (ALDEx2) was used for differential abundance analysis. RESULTS Rickettsia spp. were detected in 16 out of 37 samples using iSeq 100, and this was confirmed using a PCR assay. In the phylogenetic analysis using gltA and ompA sequences of the detected Rickettsia, the highest sequence similarity was found with 'Candidatus Rickettsia jingxinensis' isolate Xian-Hl-79, 'Ca. R. jingxinensis' isolate F18, and 'Ca. R. longicornii' isolate ROK-HL727. In the microbiome study, Coxiella AB001519, a known tick symbiont, was detected in all 37 tick samples. Actinomycetospora chiangmaiensis was more abundant in Rickettsia-positive samples than in Rickettsia-negative samples. CONCLUSIONS In this study, iSeq 100 was used to investigate the microbiome of H. longicornis, and the potentially pathogenic Rickettsia strain was detected in 16 out of 37 ticks. We believe that this approach will aid in large-scale pathogen screening of arthropods to be used in vector-borne disease control programs.
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Affiliation(s)
- Ju Yeong Kim
- Department of Environmental Medical Biology, Institute of Tropical Medicine, Arthropods of Medical Importance Resource Bank, Yonsei University College of Medicine, Yonsei-ro 50-1, Seodaemun-gu, Seoul, 03722, South Korea
| | - Myung-Hee Yi
- Department of Environmental Medical Biology, Institute of Tropical Medicine, Arthropods of Medical Importance Resource Bank, Yonsei University College of Medicine, Yonsei-ro 50-1, Seodaemun-gu, Seoul, 03722, South Korea
| | - Alghurabi Areej Sabri Mahdi
- Department of Global Health Security, Graduate School of Public Health, Yonsei University, Seoul, 03722, South Korea
| | - Tai-Soon Yong
- Department of Environmental Medical Biology, Institute of Tropical Medicine, Arthropods of Medical Importance Resource Bank, Yonsei University College of Medicine, Yonsei-ro 50-1, Seodaemun-gu, Seoul, 03722, South Korea.
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Molecular Detection and Phylogeny of Tick-Borne Pathogens in Ticks Collected from Dogs in the Republic of Korea. Pathogens 2021; 10:pathogens10050613. [PMID: 34067827 PMCID: PMC8157029 DOI: 10.3390/pathogens10050613] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2021] [Revised: 05/13/2021] [Accepted: 05/15/2021] [Indexed: 11/16/2022] Open
Abstract
Ticks are important vectors of various pathogens that result in clinical illnesses in humans and domestic and wild animals. Information regarding tick infestations and pathogens transmitted by ticks is important for the identification and prevention of disease. This study was a large-scale investigation of ticks collected from dogs and their associated environments in the Republic of Korea (ROK). It included detecting six prevalent tick-borne pathogens (Anaplasma spp., A. platys, Borrelia spp., Babesia gibsoni, Ehrlichia canis, and E. chaffeensis). A total of 2293 ticks (1110 pools) were collected. Haemaphysalis longicornis (98.60%) was the most frequently collected tick species, followed by Ixodes nipponensis (0.96%) and H. flava (0.44%). Anaplasma spp. (24/1110 tick pools; 2.16%) and Borrelia spp. (4/1110 tick pools; 0.36%) were detected. The phylogenetic analyses using 16S rRNA genes revealed that the Anaplasma spp. detected in this study were closely associated with A. phagocytophilum reported in humans and rodents in the ROK. Borrelia spp. showed phylogenetic relationships with B. theileri and B. miyamotoi in ticks and humans in Mali and Russia. These results demonstrate the importance of tick-borne disease surveillance and control in dogs in the ROK.
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