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Ilyas MZ, Sa KJ, Ali MW, Lee JK. Toxic effects of lead on plants: integrating multi-omics with bioinformatics to develop Pb-tolerant crops. PLANTA 2023; 259:18. [PMID: 38085368 DOI: 10.1007/s00425-023-04296-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2023] [Accepted: 11/15/2023] [Indexed: 12/18/2023]
Abstract
MAIN CONCLUSION Lead disrupts plant metabolic homeostasis and key structural elements. Utilizing modern biotechnology tools, it's feasible to develop Pb-tolerant varieties by discovering biological players regulating plant metabolic pathways under stress. Lead (Pb) has been used for a variety of purposes since antiquity despite its toxic nature. After arsenic, lead is the most hazardous heavy metal without any known beneficial role in the biological system. It is a crucial inorganic pollutant that affects plant biochemical and morpho-physiological attributes. Lead toxicity harms plants throughout their life cycle and the extent of damage depends on the concentration and duration of exposure. Higher levels of lead exposure disrupt numerous key metabolic activities of plants including oxygen-evolving complex, organelles integrity, photosystem II connectivity, and electron transport chain. This review summarizes the detrimental effects of lead toxicity on seed germination, crop growth, and yield, oxidative and ultra-structural alterations, as well as nutrient absorption, transport, and assimilation. Further, it discusses the Pb-induced toxic modulation of stomatal conductance, photosynthesis, respiration, metabolic-enzymatic activity, osmolytes accumulation, and antioxidant activity. It is a comprehensive review that reports on omics-based studies along with morpho-physiological and biochemical modifications caused by lead stress. With advances in DNA sequencing technologies, genomics and transcriptomics are gradually becoming popular for studying Pb stress effects in plants. Proteomics and metabolomics are still underrated and there is a scarcity of published data, and this review highlights both their technical and research gaps. Besides, there is also a discussion on how the integration of omics with bioinformatics and the use of the latest biotechnological tools can aid in developing Pb-tolerant crops. The review concludes with core challenges and research directions that need to be addressed soon.
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Affiliation(s)
- Muhammad Zahaib Ilyas
- Department of Applied Plant Sciences, College of Bio-Resource Sciences, Kangwon National University, Chuncheon, 24341, South Korea
| | - Kyu Jin Sa
- Department of Crop Science, College of Ecology & Environmental Sciences, Kyungpook National University, Sangju, 37224, Korea
| | - Muhammad Waqas Ali
- School of Biosciences, University of Birmingham, Birmingham, B15 2TT, UK
- Department of Crop Genetics, John Innes Center, Norwich Research Park, Norwich, NR4 7UH, UK
| | - Ju Kyong Lee
- Department of Applied Plant Sciences, College of Bio-Resource Sciences, Kangwon National University, Chuncheon, 24341, South Korea.
- Interdisciplinary Program in Smart Agriculture, Kangwon National University, Chuncheon, 24341, South Korea.
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Ijaz M, Ansari MUR, Alafari HA, Iqbal M, Alshaya DS, Fiaz S, Ahmad HM, Zubair M, Ramzani PMA, Iqbal J, Abushady AM, Attia K. Citric acid assisted phytoextraction of nickle from soil helps to tolerate oxidative stress and expression profile of NRAMP genes in sunflower at different growth stages. FRONTIERS IN PLANT SCIENCE 2022; 13:1072671. [PMID: 36531389 PMCID: PMC9751920 DOI: 10.3389/fpls.2022.1072671] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/17/2022] [Accepted: 11/11/2022] [Indexed: 06/17/2023]
Abstract
INTRODUCTION Soil polluted with Nickel (Ni) adversely affects sunflower growth resulting in reduced yield. Counterbalancing Ni toxicity requires complex molecular, biochemical, and physiological mechanisms at the cellular, tissue, and whole plant levels, which might improve crop productivity. One of the primary adaptations to tolerate Ni toxicity is the enhanced production of antioxidant enzymes and the elevated expression of Ni responsive genes. METHODS In this study, biochemical parameters, production of ROS, antioxidants regulation, and expression of NRAMP metal transporter genes were studied under Ni stress in sunflower. There were four soil Ni treatments (0, 50, 100, and 200 mg kg-1 soil), while citric acid (CA, 5 mM kg-1 soil) was applied on the 28th and 58th days of plant growth. The samples for all analyses were obtained on the 30th and 60th day of plant growth, respectively. RESULTS AND DISCUSSION The results indicated that the concentrations of Ni in roots and shoots were increased with increasing concentrations of Ni at both time intervals. Proline contents, ascorbic acid, protein, and total phenolics were reduced under Ni-stress, but with the application of CA, improvement was witnessed in their contents. The levels of malondialdehyde and hydrogen peroxide were enhanced with the increasing concentration of Ni, and after applying CA, they were reduced. The contents of antioxidants, i.e., catalase, peroxidase, superoxide dismutase, ascorbate peroxidase, dehydroascorbate reductase, and glutathione reductase, were increased at 50 ppm Ni concentration and decreased at higher concentrations of Ni. The application of CA significantly improved antioxidants at all concentrations of Ni. The enhanced expression of NRAMP1 (4, 51 and 81 folds) and NRAMP3 (1.05, 4 and 6 folds) was found at 50, 100 and 200ppm Ni-stress, respectively in 30 days old plants and the same pattern of expression was recorded in 60 days old plants. CA further enhanced the expression at both developmental stages. CONCLUSION In conclusion, CA enhances Ni phytoextraction efficiency as well as protect plant against oxidative stress caused by Ni in sunflower.
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Affiliation(s)
- Munazza Ijaz
- Department of Bioinformatics and Biotechnology, Government College University, Faisalabad, Pakistan
| | - Mahmood-ur-Rahman Ansari
- Department of Bioinformatics and Biotechnology, Government College University, Faisalabad, Pakistan
| | - Hayat Ali Alafari
- Department of Biology, College of science, Princess Nourah bint Abdulrahman University, Riyadh, Saudi Arabia
| | - Muhammad Iqbal
- Department of Environmental Science and Engineering, Government College University, Faisalabad, Pakistan
| | - Dalal S. Alshaya
- Department of Biology, College of science, Princess Nourah bint Abdulrahman University, Riyadh, Saudi Arabia
| | - Sajid Fiaz
- Department of Plant Breeding and Genetics, The University of Haripur, Haripur, Pakistan
| | - Hafiz Muhammad Ahmad
- Department of Bioinformatics and Biotechnology, Government College University, Faisalabad, Pakistan
| | - Muhammad Zubair
- Department of Bioinformatics and Biotechnology, Government College University, Faisalabad, Pakistan
| | | | - Javed Iqbal
- Department of Agricultural Engineering, Khwaja Fareed university of Engineering and Information Technology, Rahim Yar Khan, Pakistan
| | - Asmaa M. Abushady
- Biotechnology School, Nile University, Sheikh Zayed, Giza, Egypt
- Department of Genetics, Agriculture College, Ain Shams University, Cairo, Egypt
| | - Kotb Attia
- Center of Excellence in Biotechnology Research, King Saud University, Riyadh, Saudi Arabia
- Rice Biotechnology Lab, Rice Department, Field Crops Research Institute, ARC, Sakha, Egypt
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Singh R, Misra AN, Sharma P. Differential responses of thiol metabolism and genes involved in arsenic detoxification in tolerant and sensitive genotypes of bioenergy crop Ricinus communis. PROTOPLASMA 2021; 258:391-401. [PMID: 33130947 DOI: 10.1007/s00709-020-01577-y] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2020] [Accepted: 10/19/2020] [Indexed: 06/11/2023]
Abstract
Castor, a non-food, dedicated bioenergy crop, has immense potential to be used for phytoremediation/revegetation of heavy metal contaminated sites. In the previous study, we identified arsenate [As(V)]-tolerant (WM) and As(V)-sensitive (GCH 2) genotypes of castor (Ricinus communis L.) with differential accumulation and tolerance of arsenic [As]. The role of thiols in As(V) toxicity and tolerance mechanism in the castor plant is not fully understood. On the one hand, thiol-dependent reduction of As(V) to As(III) by arsenate reductase (AR) makes it capable of reacting with thiol groups of protein leading to disturbed metabolic pathways; on the other hand, reduction of As(V) to arsenite [As(III)] by AR and then complexation of As(III) with phytochelatins (PCs) and compartmentalization of As(III)-PC complex are considered as the major detoxification mechanisms of As(V). In our study, the expression of RcAR increased in leaves and roots of As(V)-tolerant castor genotype WM but decreased in sensitive genotype GCH 2 due to 200 μM As(V) treatment. The activity of glutathione reductase (GR) increased significantly in the tolerant genotype, whereas it remained same in the sensitive genotype. GSH/GSSH ratio declined substantially in the sensitive genotype. The increased expression of phytochelatin synthase 1 isoform 1 (RcPCS1X1) in roots, RcPCS1X2 and metallothionein type 2 (RcMT2) in leaves, and c-type ABC transporter (RcABCC) in roots and leaves of WM was observed, but the expression of these genes declined or remained the same in GCH 2. Overall, our results suggest the essential roles of GR, RcAR, RcPCS1, RcMT2, and RcABCC in the tolerance of WM castor genotype to As(V) toxicity.
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Affiliation(s)
- Rajani Singh
- Department of Life Sciences, Central University of Jharkhand, Brambe, Ranchi, 835205, India
| | - Amarendra Narayan Misra
- Department of Life Sciences, Central University of Jharkhand, Brambe, Ranchi, 835205, India
- Khallikote University, Berhampur, Odisha, 761008, India
| | - Pallavi Sharma
- Department of Life Sciences, Central University of Jharkhand, Brambe, Ranchi, 835205, India.
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Riaz M, Kamran M, Fang Y, Wang Q, Cao H, Yang G, Deng L, Wang Y, Zhou Y, Anastopoulos I, Wang X. Arbuscular mycorrhizal fungi-induced mitigation of heavy metal phytotoxicity in metal contaminated soils: A critical review. JOURNAL OF HAZARDOUS MATERIALS 2021; 402:123919. [PMID: 33254825 DOI: 10.1016/j.jhazmat.2020.123919] [Citation(s) in RCA: 164] [Impact Index Per Article: 54.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2020] [Revised: 09/03/2020] [Accepted: 09/05/2020] [Indexed: 05/07/2023]
Abstract
The heavy metal pollution is a worldwide problem and has received a serious concern for the ecosystem and human health. In the last decade, remediation of the agricultural polluted soil has attracted great attention. Phytoremediation is one of the technologies that effectively alleviate heavy metal toxicity, however, this technique is limited to many factors contributing to low plant growth rate and nature of metal toxicities. Arbuscular mycorrhizal fungi (AMF) assisted alleviation of heavy metal phytotoxicity is a cost-effective and environment-friendly strategy. AMF have a symbiotic relationship with the host plant. The bidirectional exchange of resources is a hallmark and also a functional necessity in mycorrhizal symbiosis. During the last few years, a significant progress in both physiological and molecular mechanisms regarding roles of AMF in the alleviation of heavy metals (HMs) toxicities in plants, acquisition of nutrients, and improving plant performance under toxic conditions of HMs has been well studied. This review summarized the current knowledge regarding AMF assisted remediation of heavy metals and some of the strategies used by mycorrhizal fungi to cope with stressful environments. Moreover, this review provides the information of both molecular and physiological responses of mycorrhizal plants as well as AMF to heavy metal stress which could be helpful for exploring new insight into the mechanisms of HMs remediation by utilizing AMF.
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Affiliation(s)
- Muhammad Riaz
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Root Biology Center, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, Guangdong, PR China
| | - Muhammad Kamran
- College of Resources and Environment, Huazhong Agricultural University, Wuhan, 430070, PR China
| | - Yizeng Fang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Root Biology Center, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, Guangdong, PR China
| | - Qianqian Wang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Root Biology Center, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, Guangdong, PR China
| | - Huayuan Cao
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Root Biology Center, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, Guangdong, PR China
| | - Guoling Yang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Root Biology Center, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, Guangdong, PR China
| | - Lulu Deng
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Root Biology Center, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, Guangdong, PR China
| | - Youjuan Wang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Root Biology Center, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, Guangdong, PR China
| | - Yaoyu Zhou
- College of Resources and Environment, Hunan Agricultural University, Changsha, 410128, PR China
| | - Ioannis Anastopoulos
- Radioanalytical and Environmental Chemistry Group, Department of Chemistry, University of Cyprus, P.O. Box 20537, Nicosia, CY-1678, Cyprus
| | - Xiurong Wang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Root Biology Center, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, Guangdong, PR China.
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