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Padayao MHR, Padayao FRP, Patalinghug JM, Raña GS, Yee J, Geraldino PJ, Quilantang N. Antimicrobial and quorum sensing inhibitory activity of epiphytic bacteria isolated from the red alga Halymenia durvillei. Access Microbiol 2023; 5:000563.v4. [PMID: 38188234 PMCID: PMC10765052 DOI: 10.1099/acmi.0.000563.v4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2023] [Accepted: 11/10/2023] [Indexed: 01/09/2024] Open
Abstract
Halymenia durvillei is a red alga that is commonly utilized in the Philippines as food and as a source of high-value natural products for industrial applications. However, there are no studies regarding the microbial community associated with H. durvillei and its potential applications. This study aimed to isolate and identify the epiphytic bacteria of H. durvillei and determine their antimicrobial and quorum sensing inhibitory (QSI) effects. The thalli of H. durvillei were collected at the shores of Santa Fe, Bantayan, Cebu, Philippines. Bacterial isolates were identified using 16S rRNA, and their ethyl acetate (EtOAc) extracts were subjected to antimicrobial susceptibility tests against representative species of yeast and Gram-negative and Gram-positive bacteria. Their QSI activity against Chromobacterium violaceum was also determined. Fourteen distinct bacterial colonies belonging to four genera, namely Alteromonas (3), Bacillus (5), Oceanobacillus (1) and Vibrio (5), were successfully isolated and identified. All 14 bacterial isolates exhibited antibacterial effects. EPB9, identified as Bacillus safensis , consistently showed the strongest inhibition against Escherichia coli , Staphylococcus aureus and Staphylococcus epidermidis , with minimum inhibitory concentrations (MICs) ranging from 0.0625 to 1.0 mg ml-1. In contrast, all 14 isolates showed weak antifungal effects. Both B. safensis (EPB9) and Bacillus australimaris (EPB15) exhibited QSI effects at 100 mg ml-1, showing opaque zones of 3.1±0.9 and 3.8±0.4 mm, respectively. This study is the first to isolate and identify the distinct microbial epiphytic bacterial community of H. durvillei and its potential as an abundant resource for new antibacterial and QSI bioactives.
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Affiliation(s)
- Mary Hannah Rose Padayao
- Applied Microbiology and Molecular Biology Laboratory, Department of Biology, University of San Carlos, Cebu City 6000, Philippines
- Tuklas Lunas Development Center, University of San Carlos, Cebu City 6000, Philippines
| | - Francis Reuben Paul Padayao
- Applied Microbiology and Molecular Biology Laboratory, Department of Biology, University of San Carlos, Cebu City 6000, Philippines
| | - Jenny Marie Patalinghug
- Applied Microbiology and Molecular Biology Laboratory, Department of Biology, University of San Carlos, Cebu City 6000, Philippines
| | - Gem Stephen Raña
- Applied Microbiology and Molecular Biology Laboratory, Department of Biology, University of San Carlos, Cebu City 6000, Philippines
| | - Jonie Yee
- Applied Microbiology and Molecular Biology Laboratory, Department of Biology, University of San Carlos, Cebu City 6000, Philippines
- Tuklas Lunas Development Center, University of San Carlos, Cebu City 6000, Philippines
| | - Paul John Geraldino
- Applied Microbiology and Molecular Biology Laboratory, Department of Biology, University of San Carlos, Cebu City 6000, Philippines
- Tuklas Lunas Development Center, University of San Carlos, Cebu City 6000, Philippines
| | - Norman Quilantang
- Applied Microbiology and Molecular Biology Laboratory, Department of Biology, University of San Carlos, Cebu City 6000, Philippines
- Tuklas Lunas Development Center, University of San Carlos, Cebu City 6000, Philippines
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Sánchez-Díaz R, Molina-Garza ZJ, Cruz-Suárez LE, Selvin J, Kiran GS, Gómez-Gil B, Galaviz-Silva L, Ibarra-Gámez JC. Draft genome sequences of Bacillus pumilus 36R ATNSAL and B. safensis 13L LOBSAL, two potential candidate probiotic strains for shrimp aquaculture. J Glob Antimicrob Resist 2022; 31:304-308. [PMID: 36272706 DOI: 10.1016/j.jgar.2022.10.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2020] [Revised: 09/21/2022] [Accepted: 10/06/2022] [Indexed: 11/08/2022] Open
Abstract
OBJECTIVES This work aimed to isolate bacterial strains with antagonist activity against Vibrio parahaemolyticus, the causative agent of acute hepatopancreatic necrosis disease (VPAHPND) that was isolated from outbreaks in Mexico. Here, we report the draft genome sequences of two antagonistic strains, isolated from saline sediment in Sonora, Mexico. METHODS Cross-streak and well diffusion tests were employed to find the bacterial strains with higher inhibitory activity against VPAHPND. The whole genomes of B. pumilus 36R ATNSAL and B. safensis 13L LOBSAL were sequenced using Ion TorrentTM (PGM) and Illumina MiseqTM platforms, respectively. Annotation was performed using the RAST server, and the genes involved in the biosynthesis of bacterial secondary metabolites were predicted using antiSMASH. RESULTS Two bacterial isolates, B. safensis 13L LOBSAL and B. pumilus 36R ATNSAL, were chosen based on their strong antagonistic profiles. The genome of 36R ATNSAL was 3.94 Mbp in length and contained 3824 genes and a total of 4116 coding sequences (CDSs); the genome of 13L LOBSAL was 3.68 Mbp and contained 3619 genes and 3688 CDSs. Twenty-eight and 32 biosynthetic gene clusters responsible for putative antimicrobial metabolite production were identified in 36R ATNSAL and 13L LOBSAL, respectively. CONCLUSIONS The two strains 13L LOBSAL and 36R ATNSAL showed excellent probiotic profiles in vitro. The genome sequences will help with the mining and reconstruction of metabolic pathways in Bacillus strains. Genome sequence-guided strain improvement could augment the probiotic potential of Bacillus strains for applications in shrimp aquaculture.
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Affiliation(s)
- Ricardo Sánchez-Díaz
- Technological Institute of Sonora (ITSON), 5 de Febrero 818 Sur, Col. Centro, Ciudad Obregón, Sonora,CP 85000, México
| | - Zinnia Judith Molina-Garza
- Autonomous University of Nuevo Leon (UANL), Ave. Universidad S/N, Cd. Universitaria, San Nicolás de los Garza, Nuevo León, CP 66455, Mexico
| | - Lucía Elizabeth Cruz-Suárez
- Autonomous University of Nuevo Leon (UANL), Ave. Universidad S/N, Cd. Universitaria, San Nicolás de los Garza, Nuevo León, CP 66455, Mexico
| | - Joseph Selvin
- Department of Microbiology, Pondicherry University, Puducherry, India
| | - George Seghal Kiran
- Department of Food Science and Technology, Pondicherry University, Puducherry, India
| | - Bruno Gómez-Gil
- Research Center for Food and Development (CIAD), Mazatlan Unit, Av. Sábalo Cerritos S/N, Mazatlán, Sinaloa, C.P. 82112. Mexico
| | - Lucio Galaviz-Silva
- Autonomous University of Nuevo Leon (UANL), Ave. Universidad S/N, Cd. Universitaria, San Nicolás de los Garza, Nuevo León, CP 66455, Mexico.
| | - José Cuauhtémoc Ibarra-Gámez
- Technological Institute of Sonora (ITSON), 5 de Febrero 818 Sur, Col. Centro, Ciudad Obregón, Sonora,CP 85000, México.
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Laamarti M, Chemao-Elfihri MW, Essabbar A, Manni A, Kartti S, Alouane T, Temsamani L, Eljamali JE, Sbabou L, Ouadghiri M, Filali-Maltouf A, Belyamani L, Ibrahimi A. Genomic analysis of two Bacillus safensis isolated from Merzouga desert reveals desert adaptive and potential plant growth-promoting traits. Funct Integr Genomics 2022; 22:1173-1187. [PMID: 36175602 DOI: 10.1007/s10142-022-00905-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2022] [Revised: 09/19/2022] [Accepted: 09/20/2022] [Indexed: 11/04/2022]
Abstract
Deserts represent extreme environments for microorganisms, and conditions such as high soil salinity, nutrient deficiency, and increased levels of UV radiation make desert soil communities of high biotechnological potential. In this study, we isolated, sequenced, and assembled the genomes of Bacillus safensis strains BcP62 and Bcs93, to which we performed comparative genome analyses. Using the DDH and ANI of both strains with the available B. safensis genomes, we identified three potential subspecies within this group. Intra-species core genome phylogenetic analysis did not result in clustering genomes by niche type, with some exceptions. This study also revealed that the genomes of the analyzed strains possessed plant growth-promoting characteristics, most of which were conserved in all B. safensis strains. Furthermore, we highlight the genetic features of B. safensis BcP62 and Bcs93 related to survival in the Merzouga desert in Morocco. These strains could be potentially used in agriculture as PGPB in extreme environments, given their high tolerability to unfavorable conditions.
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Affiliation(s)
- Meriem Laamarti
- Biotechnology Lab (MedBiotech), Bioinova Research Center, Rabat Medical & Pharmacy School, Mohammed V University, Rabat, Morocco
| | - Mohammed Walid Chemao-Elfihri
- Biotechnology Lab (MedBiotech), Bioinova Research Center, Rabat Medical & Pharmacy School, Mohammed V University, Rabat, Morocco
| | - Abdelmounim Essabbar
- Biotechnology Lab (MedBiotech), Bioinova Research Center, Rabat Medical & Pharmacy School, Mohammed V University, Rabat, Morocco
| | - Amina Manni
- Laboratory of Microbiology and Molecular Biology, Faculty of Sciences, Mohammed V University, Rabat, Morocco
| | - Souad Kartti
- Biotechnology Lab (MedBiotech), Bioinova Research Center, Rabat Medical & Pharmacy School, Mohammed V University, Rabat, Morocco
| | - Tarek Alouane
- Biotechnology Lab (MedBiotech), Bioinova Research Center, Rabat Medical & Pharmacy School, Mohammed V University, Rabat, Morocco
| | - Loubna Temsamani
- Laboratory of Microbiology and Molecular Biology, Faculty of Sciences, Mohammed V University, Rabat, Morocco
| | - Jamal-Eddine Eljamali
- Laboratory of Microbiology and Molecular Biology, Faculty of Sciences, Mohammed V University, Rabat, Morocco
| | - Laila Sbabou
- Laboratory of Microbiology and Molecular Biology, Faculty of Sciences, Mohammed V University, Rabat, Morocco.,Université Mohamned VI des Sciences de la Santé (UM6SS), Casablanca, Morocco
| | - Mouna Ouadghiri
- Biotechnology Lab (MedBiotech), Bioinova Research Center, Rabat Medical & Pharmacy School, Mohammed V University, Rabat, Morocco
| | - Abdelkarim Filali-Maltouf
- Laboratory of Microbiology and Molecular Biology, Faculty of Sciences, Mohammed V University, Rabat, Morocco
| | - Lahcen Belyamani
- Université Mohamned VI des Sciences de la Santé (UM6SS), Casablanca, Morocco.,Emergency Department, Military Hospital Mohammed V, Rabat Medical & Pharmacy School, Mohammed V University, Rabat, Morocco
| | - Azeddine Ibrahimi
- Biotechnology Lab (MedBiotech), Bioinova Research Center, Rabat Medical & Pharmacy School, Mohammed V University, Rabat, Morocco. .,Université Mohamned VI des Sciences de la Santé (UM6SS), Casablanca, Morocco.
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Yadav M, Sehrawat N, Kumar S, Sharma AK, Singh M, Kumar A. Malic acid: fermentative production and applications. PHYSICAL SCIENCES REVIEWS 2022. [DOI: 10.1515/psr-2022-0165] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
Microbial metabolites have gained lot of industrial interest. These are currently employed in various industries including pharmaceuticals, chemical, textiles, food etc. Organic acids are among the important microbial products. Production of microbial organic acids present numerous advantages like agro-industrial waste may be utilized as substrate, low production cost, natural in origin and production is environment friendly. Malic acid is an organic acid (C4 dicarboxylic acid) that can be produced by microbes. It is also useful in industrial sectors as food, chemicals, and pharmaceuticals etc. Production/extraction of malic acid has been reported from fruits, egg shells, microbes, via chemical synthesis, bio-transformation and from renewable sources. Microbial production of malic acid seems very promising due to various advantages and the approach is environment-friendly. In recent years, researchers have focused on fermentative microbial production of malic acid and possibility of using agro-industrial waste as raw substrates. In current article, malic acid production along with applications has been discussed with recent advances in the area.
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Affiliation(s)
- Mukesh Yadav
- Department of Biotechnology , Maharishi Markandeshwar (Deemed to be University) , Mullana-Ambala , India
| | - Nirmala Sehrawat
- Department of Biotechnology , Maharishi Markandeshwar (Deemed to be University) , Mullana-Ambala , India
| | - Sunil Kumar
- Department of Microbiology, Faculty of Bio-Medical Sciences , Kampala International University , Kampala , Uganda
| | - Anil Kumar Sharma
- Department of Biotechnology , Maharishi Markandeshwar (Deemed to be University) , Mullana-Ambala , India
| | - Manoj Singh
- Department of Biotechnology , Maharishi Markandeshwar (Deemed to be University) , Mullana-Ambala , India
| | - Amit Kumar
- Department of Biotechnology, School of Engineering and Technology , Sharda University , Greater Noida , U.P. , India
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Huynh-Phuoc V, Ly TQ, Purbiantoro W, Ngo HVT, Afonso F, Vu NU, Cheng TC. Bacillus safensis isolated from white-leg shrimp, Penaeus vannamei in Taiwan with antagonistic activity against common Vibrio pathogens. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2022. [DOI: 10.1016/j.bcab.2022.102477] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
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Scarduelli M, Guizelini D, Alves Cardos RL, Ceccon DM, Donatti L, de Baura VA, de Oliveira Pedrosa F, Huergo LF, de Souza EM. The Complete Genome Sequence of Bacillus safensis BRM1 Isolated from Brazilian Mangrove Sediment: A Potential Source of Biomass Converting Enzymes. Open Microbiol J 2022. [DOI: 10.2174/18742858-v16-e2203180] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
Background:
Bacillus safensis BRM1 was isolated from Brazilian mangrove sediment and selected for its ability to grow in xylan as the sole carbon source. To identify genes encoding biomass conversion enzymes, the genome of this bacterium was sequenced.
Methods:
Genome wide analysis revealed 99% nucleotide identity to the Bacillus safensis genome. The isolated strain was named B. safensis BRM1, and its genome consists of a circular chromosome of 3.74 Mb with a GC content of 41.8%. Genes encoding a plethora of hydrolytic enzymes are present in the BRM1 genome but absent from the other B. safensis genomes.
Results:
A total of 23 genes encoding putative cellulases or hemicellulases were identified.
Conclusion:
These data support that B. safensis BRM1 is an interesting candidate for the prospection of enzymes that can be applied in the conversion of cellulosic biomass to biofuel.
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Bioprocess Optimisation for High Cell Density Endoinulinase Production from Recombinant Aspergillus niger. Appl Biochem Biotechnol 2021; 193:3271-3286. [PMID: 34117627 DOI: 10.1007/s12010-021-03592-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2021] [Accepted: 05/28/2021] [Indexed: 10/21/2022]
Abstract
Endoinulinase gene was expressed in recombinant Aspergillus niger for selective and high-level expression using an exponential fed-batch fermentation. The effects of the growth rate (μ), glucose feed concentration, nitrogen concentration and fungal morphology on enzyme production were evaluated. A recombinant endoinulinase with a molecular weight of 66 kDa was secreted. Endoinulinase production was growth associated at μ> 0.04 h-1, which is characteristic of the constitutive gpd promoter used for the enzyme production. The highest volumetric activity (670 U/ml) was achieved at a growth rate of 93% of μmax (0.07 h-1), while enzyme activity (506 U/ml) and biomass substrate yield (0.043 gbiomassDW/gglucose) significantly decreased at low μ (0.04 h-1). Increasing the feed concentration resulted in high biomass concentrations and viscosity, which necessitated high agitation to enhance the mixing efficiency and oxygen. However, the high agitation and low DO levels (ca. 8% of saturation) led to pellet disruption and growth in dispersed morphology. Enzyme production profiles, product (Yp/s) and biomass (Yx/s) yield coefficients were not affected by feed concentration and morphological change. The gradual increase in the concentration of nitrogen sources showed that, a nitrogen limited culture was not suitable for endoinulinase production in recombinant A. niger. Moreover, the increase in enzyme volumetric activity was still directly related to an increase in biomass concentration. An increase in nitrogen concentration, from 3.8 to 12 g/L, resulted in volumetric activity increase from 393 to 670 U/ml, but the Yp/s (10053 U/gglucose) and Yx/s (0.049 gbiomasDWs/gglucose) did not significantly change. The data demonstrated the potential of recombinant A. niger and high cell density fermentation for the development of large-scale endoinulinase production system.
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Singh R, Singh T, Pandey A. Fungal endoinulinase production from raw Asparagus inulin for the production of fructooligosaccharides. ACTA ACUST UNITED AC 2020. [DOI: 10.1016/j.biteb.2020.100417] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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Singh RS, Singh T, Larroche C. Biotechnological applications of inulin-rich feedstocks. BIORESOURCE TECHNOLOGY 2019; 273:641-653. [PMID: 30503580 DOI: 10.1016/j.biortech.2018.11.031] [Citation(s) in RCA: 57] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/03/2018] [Revised: 11/05/2018] [Accepted: 11/08/2018] [Indexed: 06/09/2023]
Abstract
Inulin is a naturally occurring second largest storage polysaccharide with a wide range of applications in pharmaceutical and food industries. It is a robust polysaccharide which consists of a linear chain of β-2, 1-linked-d-fructofuranose molecules terminated with α-d-glucose moiety at the reducing end. It is present in tubers, bulbs and tuberous roots of more than 36,000 plants belonging to both monocotyledonous and dicotyledonous families. Jerusalem artichoke, chicory, dahlia, asparagus, etc. are important inulin-rich plants. Inulin is a potent substrate and inducer for the production of inulinases. Inulin/inulin-rich feedstocks can be used for the production of fructooligosaccharides and high-fructose syrup. Additionally, inulin-rich feedstocks can also be exploited for the production of other industrially important products like acetone, butanol, bioethanol, single cell proteins, single cell oils, 2, 3-butanediol, sorbitol, mannitol, etc. Current review highlights the biotechnological potential of inulin-rich feedstocks for the production of various industrially important products.
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Affiliation(s)
- R S Singh
- Carbohydrate and Protein Biotechnology Laboratory, Department of Biotechnology, Punjabi University, Patiala 147 002, Punjab, India.
| | - Taranjeet Singh
- Carbohydrate and Protein Biotechnology Laboratory, Department of Biotechnology, Punjabi University, Patiala 147 002, Punjab, India
| | - Christian Larroche
- Université Clermont Auvergne, Institut Pascal, UMR, CNRS 6602, and Labex, IMobS3, 4 Avenue Blaise Pascal, TSA 60026, CS 60026, F-63178 Aubiere Cedex, France
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Singh RS, Chauhan K, Jindal A. Response surface optimization of solid state fermentation for inulinase production from Penicillium oxalicum using corn bran. JOURNAL OF FOOD SCIENCE AND TECHNOLOGY 2018; 55:2533-2540. [PMID: 30042569 PMCID: PMC6033819 DOI: 10.1007/s13197-018-3173-3] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Revised: 04/03/2018] [Accepted: 04/13/2018] [Indexed: 10/17/2022]
Abstract
Response surface methodology has been implemented for the utilization of corn bran for inulinase production by Penicillium oxalicum. CCRD of RSM with 15 runs was practiced to optimize three independent variables: moisture (70-90%), incubation time (4-8 days) and pH (5-8). However, other media constituents viz. inulin (1%), NaNO3 (0.2%), NH4H2PO4 (0.2%), KH2PO4 (0.2%), MgSO4·7H2O (0.05%) and FeSO4·7H2O (0.001%) were kept constant during solid state fermentations. Solid state fermentations were carried out at 30 °C at flask-level. A substantial inulinase production (77.95 IU/gds) was obtained under the optimized conditions i.e., moisture (80%), incubation time (6.0 days) and pH (6.5). Multiple correlation coefficient 'R2' for inulinase production was 1.00, which justifies good agreement between experimental and predicted values. Besides, 'R2' value close to one, also authenticates the validity of the model. The experimentation carried out at laboratory scale shown corn bran a good substrate for inulinase production by P. oxalicum.
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Affiliation(s)
- Ram S. Singh
- Carbohydrate and Protein Biotechnology Laboratory, Department of Biotechnology, Punjabi University, Patiala, Punjab 147 002 India
| | - Kanika Chauhan
- Carbohydrate and Protein Biotechnology Laboratory, Department of Biotechnology, Punjabi University, Patiala, Punjab 147 002 India
| | - Arju Jindal
- Carbohydrate and Protein Biotechnology Laboratory, Department of Biotechnology, Punjabi University, Patiala, Punjab 147 002 India
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Singh RS, Chauhan K, Pandey A, Larroche C. Biocatalytic strategies for the production of high fructose syrup from inulin. BIORESOURCE TECHNOLOGY 2018; 260:395-403. [PMID: 29636277 DOI: 10.1016/j.biortech.2018.03.127] [Citation(s) in RCA: 41] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2018] [Revised: 03/27/2018] [Accepted: 03/29/2018] [Indexed: 06/08/2023]
Abstract
The consumption of natural and low calorie sugars has increased enormously from the past few decades. To fulfil the demands, the production of healthy sweeteners as an alternative to sucrose has recently received considerable interest. Fructose is the most health beneficial and safest sugar amongst them. It is generally recognised as safe (GRAS) and has become an important food ingredient due its sweetening and various health promising functional properties. Commercially, high fructose syrup is prepared from starch by multienzymatic process. Single-step enzymatic hydrolysis of inulin using inulinase has emerged as an alternate to the conventional approach to reduce complexity, time and cost. The present review, outlines the enzymatic strategies used for the preparation of high fructose syrup from inulin/inulin-rich plant materials in batch and continuous systems, and its conclusions.
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Affiliation(s)
- R S Singh
- Carbohydrate and Protein Biotechnology Laboratory, Department of Biotechnology, Punjabi University, Patiala 147 002, Punjab, India.
| | - Kanika Chauhan
- Carbohydrate and Protein Biotechnology Laboratory, Department of Biotechnology, Punjabi University, Patiala 147 002, Punjab, India
| | - Ashok Pandey
- CSIR-Indian Institute of Toxicology Research, 31 Marg, 226 001 Lucknow, India
| | - Christian Larroche
- Université Clermont Auvergne, Institut Pascal, UMR, CNRS 6602, and Labex, IMobS3, 4 Avenue Blaise Pascal, TSA 60026, CS 60026, F-63178 Aubiere Cedex, France
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Bata-Vidács I, Baka E, Tóth Á, Csernus O, Luzics S, Adányi N, Székács A, Kukolya J. Investigation of regional differences of the dominant microflora of spice paprika by molecular methods. Food Control 2018. [DOI: 10.1016/j.foodcont.2017.04.030] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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13
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Kai W, Peisheng Y, Rui M, Wenwen J, Zongze S. Diversity of culturable bacteria in deep-sea water from the South Atlantic Ocean. Bioengineered 2017; 8:572-584. [PMID: 28140758 DOI: 10.1080/21655979.2017.1284711] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022] Open
Abstract
The variability of culturable bacterial diversity and distribution was studied by phylogenetic analysis of 16S rRNA sequences. Seventeen water samples were examined and were collected, from different depths in the range of 5 m to 2700 m at 3 sampling sites (CTD06, CTD10 and CTD11) in the South Atlantic Ocean. Phylogenetic analysis of 16S rRNA gene sequences revealed a significant diversity of culturable bacteria. A total of 247 strains clustered into 8 classes: γ-Proteobacteria, α-Proteobacteria, Actinobacteria, Actinomycetales, Bacilli, Flavobacteria, Opitutae and Sphingobacteria. The 17 water samples were dominated by populations of strains belonging to the genus Erythrobacter (16.60%). Of the 247 strains, 10 were potential new species and might form a minor population in the deep sea. To our knowledge, this is the first report to analyze the diversity of culturable bacteria in the South Atlantic Ocean from different depths across the water column.
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Affiliation(s)
- Wang Kai
- a School of Marine Science and Technology, Harbin Institute of Technology , Weihai , People's Republic of China.,b School of Municipal and Environmental Engineering, Harbin Institute of Technology , Harbin , People's Republic of China
| | - Yan Peisheng
- a School of Marine Science and Technology, Harbin Institute of Technology , Weihai , People's Republic of China.,b School of Municipal and Environmental Engineering, Harbin Institute of Technology , Harbin , People's Republic of China
| | - Ma Rui
- a School of Marine Science and Technology, Harbin Institute of Technology , Weihai , People's Republic of China
| | - Jia Wenwen
- a School of Marine Science and Technology, Harbin Institute of Technology , Weihai , People's Republic of China
| | - Shao Zongze
- b School of Municipal and Environmental Engineering, Harbin Institute of Technology , Harbin , People's Republic of China.,c Key Laboratory of Marine Genetic Resources-State Key Laboratory Breeding Base, Third Institute of Oceanography of State Oceanic Administration, Fujian Provincial Key Laboratory of Marine Genetic Resources , Xiamen , People's Republic of China
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Singh RS, Chauhan K. Inulinase production from a new inulinase producer, Penicillium oxalicum BGPUP-4. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2017. [DOI: 10.1016/j.bcab.2016.10.012] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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15
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A panorama of bacterial inulinases: Production, purification, characterization and industrial applications. Int J Biol Macromol 2016; 96:312-322. [PMID: 27932256 DOI: 10.1016/j.ijbiomac.2016.12.004] [Citation(s) in RCA: 78] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2016] [Revised: 12/01/2016] [Accepted: 12/01/2016] [Indexed: 11/23/2022]
Abstract
Inulinases are important hydrolysing enzymes which specifically act on β-2, 1 linkages of inulin to produce fructose or fructooligosaccharides. Fungi, yeasts and bacteria are the potent microbial sources of inulinases. The data on bacterial inulinases is scarce as compared to other microbial sources. Inulinases yield from bacteria is very less as compared to fungal and yeast sources of inulinases. Submerged fermentation (SmF) is the method of choice for the production of inulinases from bacterial sources. Moreover, inulin is a potent substrate for the production of inulinases in SmF. Many bacterial inulinases have been reported to display magnificent environment abiding features and variability in their biophysical and biochemical properties. These properties have attracted intention of many researchers towards exploring adverse ecological niches for more distinctive inulinase producing bacterial strains. Inulinases are substantially important in current biotechnological era due to their numerous industrial applications. High fructose syrup and fructooligosaccharides are two major industrial applications of inulinases. Additionally, there are many reports on the production of various metabolites like citric acid, lactic acid, ethanol, biofuels, butanediol etc. using mixed cultures of inulinase producing organisms with other microorganisms. The present review mainly envisages inulinase producing bacterial sources, inulinase production, purification, characterization and their applications.
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Inhibition of Staphylococcus aureus by antimicrobial biofilms formed by competitive exclusion microorganisms on stainless steel. Int J Food Microbiol 2016; 238:165-171. [DOI: 10.1016/j.ijfoodmicro.2016.09.007] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2016] [Revised: 08/31/2016] [Accepted: 09/11/2016] [Indexed: 11/21/2022]
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17
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Endoinulinase production by a new endoinulinase producer Aspergillus tritici BGPUP6 using a low cost substrate. Int J Biol Macromol 2016; 92:1113-1122. [DOI: 10.1016/j.ijbiomac.2016.08.026] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2016] [Revised: 08/03/2016] [Accepted: 08/08/2016] [Indexed: 11/20/2022]
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18
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Lateef A, Ojo SA, Oladejo SM. Anti-candida, anti-coagulant and thrombolytic activities of biosynthesized silver nanoparticles using cell-free extract of Bacillus safensis LAU 13. Process Biochem 2016. [DOI: 10.1016/j.procbio.2016.06.027] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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19
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Singh RS, Singh RP, Kennedy JF. Recent insights in enzymatic synthesis of fructooligosaccharides from inulin. Int J Biol Macromol 2016; 85:565-72. [DOI: 10.1016/j.ijbiomac.2016.01.026] [Citation(s) in RCA: 91] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2015] [Revised: 01/04/2016] [Accepted: 01/06/2016] [Indexed: 01/11/2023]
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20
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Lateef A, Adelere IA, Gueguim-Kana EB. The biology and potential biotechnological applications of Bacillus safensis. Biologia (Bratisl) 2015. [DOI: 10.1515/biolog-2015-0062] [Citation(s) in RCA: 49] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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21
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Biogenic synthesis of silver nanoparticles using cell-free extract of Bacillus safensis LAU 13: antimicrobial, free radical scavenging and larvicidal activities. Biologia (Bratisl) 2015. [DOI: 10.1515/biolog-2015-0164] [Citation(s) in RCA: 52] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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22
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Yu S, Wang X, Zhang T, Stressler T, Fischer L, Jiang B, Mu W. Identification of a Novel Di-D-Fructofuranose 1,2':2,3' Dianhydride (DFA III) Hydrolysis Enzyme from Arthrobacter aurescens SK8.001. PLoS One 2015; 10:e0142640. [PMID: 26555784 PMCID: PMC4640833 DOI: 10.1371/journal.pone.0142640] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2015] [Accepted: 10/23/2015] [Indexed: 12/02/2022] Open
Abstract
Previously, a di-D-fructofuranose 1,2’:2,3’ dianhydride (DFA III)-producing strain, Arthrobacter aurescens SK8.001, was isolated from soil, and the gene cloning and characterization of the DFA III-forming enzyme was studied. In this study, a DFA III hydrolysis enzyme (DFA IIIase)-encoding gene was obtained from the same strain, and the DFA IIIase gene was cloned and expressed in Escherichia coli. The SDS-PAGE and gel filtration results indicated that the purified enzyme was a homotrimer holoenzyme of 145 kDa composed of subunits of 49 kDa. The enzyme displayed the highest catalytic activity for DFA III at pH 5.5 and 55°C, with specific activity of 232 U mg-1. Km and Vmax for DFA III were 30.7 ± 4.3 mM and 1.2 ± 0.1 mM min-1, respectively. Interestingly, DFA III-forming enzymes and DFA IIIases are highly homologous in amino acid sequence. The molecular modeling and docking of DFA IIIase were first studied, using DFA III-forming enzyme from Bacillus sp. snu-7 as a template. It was suggested that A. aurescens DFA IIIase shared a similar three-dimensional structure with the reported DFA III-forming enzyme from Bacillus sp. snu-7. Furthermore, their catalytic sites may occupy the same position on the proteins. Based on molecular docking analysis and site-directed mutagenesis, it was shown that D207 and E218 were two potential critical residues for the catalysis of A. aurescens DFA IIIase.
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Affiliation(s)
- Shuhuai Yu
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, 214122, Jiangsu, People’s Republic of China
| | - Xiao Wang
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, 214122, Jiangsu, People’s Republic of China
| | - Tao Zhang
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, 214122, Jiangsu, People’s Republic of China
- Synergetic Innovation Center of Food Safety and Nutrition, Jiangnan University, Wuxi, 214122, Jiangsu, People’s Republic of China
| | - Timo Stressler
- University of Hohenheim, Institute of Food Science and Biotechnology, Department of Biotechnology and Enzyme Science, Garbenstr. 25, 70599, Stuttgart, Germany
| | - Lutz Fischer
- University of Hohenheim, Institute of Food Science and Biotechnology, Department of Biotechnology and Enzyme Science, Garbenstr. 25, 70599, Stuttgart, Germany
| | - Bo Jiang
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, 214122, Jiangsu, People’s Republic of China
- Synergetic Innovation Center of Food Safety and Nutrition, Jiangnan University, Wuxi, 214122, Jiangsu, People’s Republic of China
| | - Wanmeng Mu
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, 214122, Jiangsu, People’s Republic of China
- Synergetic Innovation Center of Food Safety and Nutrition, Jiangnan University, Wuxi, 214122, Jiangsu, People’s Republic of China
- * E-mail:
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da Fonseca FSA, Angolini CFF, Arruda MAZ, Junior CAL, Santos CA, Saraiva AM, Pilau E, Souza AP, Laborda PR, de Oliveira PFL, de Oliveira VM, Reis FDAM, Marsaioli AJ. Identification of oxidoreductases from the petroleum Bacillus safensis strain. ACTA ACUST UNITED AC 2015; 8:152-159. [PMID: 28352585 PMCID: PMC4980753 DOI: 10.1016/j.btre.2015.09.001] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2015] [Revised: 08/25/2015] [Accepted: 09/02/2015] [Indexed: 10/31/2022]
Abstract
A gram-positive bacterium, denominated CFA-06, was isolated from Brazilian petroleum in the Campos Basin and is responsible for the degradation of aromatic compounds and petroleum aromatic fractions. The CFA-06 strain was identified as Bacillus safensis using the 16S rRNA and gyrase B sequence. Enzymatic assays revealed the presence of two oxidoreductases: a catalase and a new oxidoreductase. The oxidoreductases were enzymatically digested and analyzed via ESI-LTQ-Orbitrap mass spectrometry. The mass data revealed a novel oxidoreductase (named BsPMO) containing 224 amino acids and 89% homology with a hypothetic protein from B. safensis (CFA-06) and a catalase (named BsCat) with 491 amino acids and 60% similarity with the catalase from Bacillus pumilus (SAFR-032). The new protein BsPMO contains iron atom(s) and shows catalytic activity toward a monooxygenase fluorogenic probe in the presence of cofactors (NADH, NADPH and NAD). This study enhances our knowledge of the biodegradation process of petroleum by B. safensis.
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Affiliation(s)
- Francine S A da Fonseca
- Chemistry Institute, University of Campinas, P.B 6154, 13083-970 Campinas, São Paulo, Brazil; Institute of Agricultural Sciences, Federal University of Minas Gerais, 39404-547 Minas Gerais, Brazil
| | - Célio F F Angolini
- Chemistry Institute, University of Campinas, P.B 6154, 13083-970 Campinas, São Paulo, Brazil
| | - Marco A Zezzi Arruda
- Chemistry Institute, University of Campinas, P.B 6154, 13083-970 Campinas, São Paulo, Brazil
| | - Cícero A L Junior
- Chemistry Institute, University of Campinas, P.B 6154, 13083-970 Campinas, São Paulo, Brazil
| | - Clelton A Santos
- Center for Molecular Biology and Genetic Engineering, University of Campinas, 13083-875 São Paulo, Brazil
| | - Antonio M Saraiva
- Chemistry Institute, University of Campinas, P.B 6154, 13083-970 Campinas, São Paulo, Brazil; National Institute of Metrology, Quality and Technology - INMETRO, Xerém, Rio de Janeiro, Brazil
| | - Eduardo Pilau
- Chemistry Institute, University of Campinas, P.B 6154, 13083-970 Campinas, São Paulo, Brazil
| | - Anete P Souza
- Center for Molecular Biology and Genetic Engineering, University of Campinas, 13083-875 São Paulo, Brazil
| | - Prianda R Laborda
- Center for Molecular Biology and Genetic Engineering, University of Campinas, 13083-875 São Paulo, Brazil
| | - Patrícia F L de Oliveira
- Microbial Resources Division, Research Center for Chemistry, Biology and Agriculture (CPQBA), University of Campinas, CP 6171, CEP 13081-970, Campinas, SP, Brazil
| | - Valéria M de Oliveira
- Microbial Resources Division, Research Center for Chemistry, Biology and Agriculture (CPQBA), University of Campinas, CP 6171, CEP 13081-970, Campinas, SP, Brazil
| | | | - Anita J Marsaioli
- Chemistry Institute, University of Campinas, P.B 6154, 13083-970 Campinas, São Paulo, Brazil
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Lateef A, Adelere IA, Gueguim-Kana EB. Bacillus safensis LAU 13: a new source of keratinase and its multi-functional biocatalytic applications. BIOTECHNOL BIOTEC EQ 2015; 29:54-63. [PMID: 26740788 PMCID: PMC4684068 DOI: 10.1080/13102818.2014.986360] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2014] [Accepted: 07/22/2014] [Indexed: 11/24/2022] Open
Abstract
A newly isolated bacterium identified as Bacillus safensis based on biochemical tests and 16S rRNA analysis and its mutant variant created by exposure to ultraviolet radiation at 254 nm were investigated for keratinolytic activity. The wild-type strain produced 35.4-50.4 U/mL keratinase over a period of 120 h, while the mutant one yielded 64.4-108.5 U/mL keratinase for the same period of 120 h. The optimal conditions for the enzyme activities were pH 7.5 and 40 °C. The mutant and wild-type strain keratinases retained 59% and 54% of their activity after 12 h pretreatment at 40 °C, and 64% and 60% of their activity after 12 h at pH 7.5, respectively. The keratinases showed high substrate specificity for feathers, but low specificity for human and bovine hairs. The enzymes were activated by Na+, Ca2+, Fe2+ and Mg2+. However, while Mn2+ activated the enzyme from the mutant strain, it inhibited that of the wild type. The mutant and wild-type strain completely degraded whole chicken feathers after 6 and 9 days at 30 ± 2 °C, and also completely dehaired goat skin within 12 and 16 h, respectively, without damage to the skin. Similarly, remarkable destaining of blood-stained cloth occurred within 2-3 h. The obtained results showed an improvement in the properties of the mutant strain for use of the micro-organism or its enzyme as biocatalysts.
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Affiliation(s)
- Agbaje Lateef
- Microbiology Unit, Department of Pure and Applied Biology, Faculty of Pure and Applied Sciences, Ladoke Akintola University of Technology, Ogbomoso, Nigeria
| | - Isiaka Adedayo Adelere
- Microbiology Unit, Department of Pure and Applied Biology, Faculty of Pure and Applied Sciences, Ladoke Akintola University of Technology, Ogbomoso, Nigeria
- Department of Microbiology, Faculty of Science, Federal University of Technology, Minna, Nigeria
| | - Evariste Bosco Gueguim-Kana
- Department of Microbiology, School of Life Science, University of KwaZulu-Natal, Pietermaritzburg, South Africa
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Lateef A, Adelere IA, Gueguim-Kana EB, Asafa TB, Beukes LS. Green synthesis of silver nanoparticles using keratinase obtained from a strain of Bacillus safensis LAU 13. INTERNATIONAL NANO LETTERS 2014. [DOI: 10.1007/s40089-014-0133-4] [Citation(s) in RCA: 114] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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26
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Singh R, Singh R. Response surface optimization of endoinulinase production from a cost effective substrate by Bacillus safensis AS-08 for hydrolysis of inulin. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2014. [DOI: 10.1016/j.bcab.2014.05.002] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
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Genome Sequence of Bacillus safensis CFA06, Isolated from Biodegraded Petroleum in Brazil. GENOME ANNOUNCEMENTS 2014; 2:2/4/e00642-14. [PMID: 25059859 PMCID: PMC4110217 DOI: 10.1128/genomea.00642-14] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Bacillus safensis is a microorganism recognized for its biotechnological and industrial potential due to its interesting enzymatic portfolio. Here, as a means of gathering information about the importance of this species in oil biodegradation, we report a draft genome sequence of a strain isolated from petroleum.
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