Infra-specific genetic and morphological diversity in Linum album (Linaceae)

Morphological diversity and fruit production of wild Salacia kraussii (Celastraceae) on the Northern Coast of KwaZulu-Natal, South Africa

This study aimed to assess morphological diversity within Salacia kraussii, a fruit and medicinal wild plant species, based on morphological features and compared the fruit production among morphological types (morphotype) that naturally occur on the northern coast of KwaZulu-Natal. Following one species plant survey, a description of the qualitative morphological features revealed that S. kraussii individuals mainly differed in their leaf shapes, having elliptic, oblong, or obovate leaves. That led us to the identification of three morphotypes, namely Salacia kraussii 'elliptic', Salacia kraussii 'oblong' and Salacia kraussii 'obovate'. The analysis of variance (one-way ANOVA) of plant quantitative features indicated that plant height, stem diameter, branch number, leaf number and area, and fruit number were significantly different between plants from different sites (p-values < 0.05) and morphotypes (p-values < 0.01). Generally, S. kraussii grows in KwaZulu-Natal as a suffrutex with many stems and exhibits short plant height, small stem diameter, branches, and little foliage per stem. The average fruit number recorded per plant stem was likewise few. Plants growing in Sikhalasenkosi (site1) dominated in average plant height (35.58 cm), leaf number (45), number of branches (4), and number of fruits (5). Plants with elliptic leaves constantly dominated in average plant height (34.45 cm), foliage (36 leaves of 16.29 cm2 each), number of branches (4), and number of fruits (5). A few plants exhibited a strong vegetative vigor and produced more than 20 fruits. There was a highly positive correlation (CC = 0.8) between plant height and leaf number, branch number and leaf number, and branch number and fruit number. However, a negative correlation (CC = -0.1) was recorded between the leaf area and stem diameter. Overall, the study showed wide morphological diversity and fruit production within and between populations of S. kraussii, on the northern coast of KwaZulu-Natal.

Genetic and Flower Volatile Diversity in Natural Populations of Origanum vulgare subsp. hirtum (Link) Ietsw. in Bulgaria: Toward the Development of a Core Collection

We studied the genetic and flower volatile diversity in natural populations of Origanum vulgare subsp. hirtum (Link) Ietsw. in Bulgaria using simple sequence repeat (SSR) and sequence-related amplified polymorphism (SRAP) markers and gas chromatography/mass spectrometry (GC/MS) analysis of flower volatiles from individual plants. Two regions, including the Kresna Gorge and Eastern Rhodopes, typical for the species comprising eight populations and 239 individual plants were included in this study. An analysis with 11 SSR markers and eight SRAP primer combinations showed that SRAP markers were substantially more informative than the SSR markers and were further used for genetic diversity analysis. The results showed low-range to mid-range genetic differentiation between the populations with pairwise fixation index (Fst) values ranging between 0.0047 and 0.11. A total of 10 genetic clusters were identified. An analysis of the flower volatile diversity identified a total of 63 compounds with the vast majority of plants belonging to the carvacrol chemotype and just a single plant to the thymol chemotype. Large deviations were observed for individual compounds within each region as well as within the populations. Hierarchical clustering showed a clear sample grouping based on the two different regions. In addition, an in-depth analysis identified six major and 23 minor metabolite clusters. The overall data set and cluster analysis were further used for the development and testing of a simple and straightforward strategy for the selection of individual plants for the development of a core collection representing the sampled natural populations for this species in Bulgaria. The proposed strategy involves precise genetic clustering of the tested plants followed by the selection of a minimal set from each genetic cluster representing the different metabolite clusters. The selected core set was further compared with a core set extracted by the PowerCore software. A comparison of the genetic and metabolic affiliation of the members of both sets showed that the reported approach selected representatives from each genetic cluster and minor metabolic cluster, whereas some metabolic clusters were unrepresented in the PowerCore set. The feasibility and efficiency of applying the pointed strategy for the development of a core collection representing both the genetic and metabolite diversity of natural populations in aromatic and medicinal plants toward subsequent steps of selection and breeding are discussed.

RAPD-based evaluation of genetic diversity among populations of the Iranian endemic species Rhabdosciadium aucheri Boiss. (Apiaceae)

Rhabosciadium aucheri is an Iranian endemic herbaceous species that grows in the west, center, and south regions of Iran. In the present study, genetic variation of 70 individuals belonging to seven natural populations of four provinces was investigated using Random Amplified Polymorphic DNA (RAPD) markers. Ten out of twenty-two RAPD primers employed in this study, generated 110 highly amplified and reproducible loci and a mean of 11.1 bands per primer and 48.13% of polymorphism was obtained. According to our results, the primer OPA10 presented the highest effective number of alleles, Shannon's index, and genetic diversity. The highest value of genetic identity (0.916) was determined between Hamadan, Nahavand and Hamadan, Alvand Mts. populations and the highest genetic distance (0.277) was observed between Hamadan, Asadabad and Kurdistan, Qorveh populations. Therefore, there is an obvious correlation between genetic diversity and geographical distribution. PCA was obtained based on RAPD molecular data and Neighbor Joining (NJ) dendrogram was provided successively. Similar results were attained employing UPGMA and Neighbor Joining dendrograms, supported by PCA ordination plot. Overall, almost moderate level of polymorphism was obtained by RAPD molecular markers at the population level that shows a reasonable amount of intraspecific variability. The reason might be due to the low level of gene flow between populations that could give rise to high genetic differentiation.

Analysis of genetic diversity among Iranian populations of Ficus carica L. (Moraceae)

Ficus carica L. is a species of Moraceae family that has been cultivated in different parts of the world from ancient time. Its fruit is eaten by human and has several medicinal properties. This species widely grows and cultivated in various parts of Iran. For this, in the current study, we investigated infraspecific genetic variation and population structure of F. carica in the country. 14 natural populations of F. carica were collected and their genomic DNA were extracted and tested with RAPD molecular technique. Parameters of population’s genetic diversity varied among the studied populations. In addition, AMOVA test revealed significant variations among the populations.  The studied populations clustered separately in UPGMA tree of RAPD data, moreover PCA and MDS plots produced similar results. STRUCTURE analysis revealed the best number of k = 9. Based on Nei’s genetic distance, we had nine distinct groups. Genetic clustering patterns according to UPGMA trees of RAPD data and Nei’s genetic distance were more similar with the results of STRUCTURE analysis. The small amount of Nm) the product of the effective size of individual populations (N) and the rate of migration among them (m) (value showed limited gene flow among the studied populations, therefore it seems that high genetic variations among these populations may be related less or few amount of gene exchange among populations.