From microbes to mammals: The experimental evolution of aging and longevity across species

Senescence, the functional deterioration of cells or organisms associated with increased age, is pervasive across the tree of life. Yet our understanding of the genetic and physiological basis underlying age-related declines in health and reproduction remains limited. Experimental evolution allows empirical examination of the question of why aging occurs; imposing selection for age-specific fitness traits shifts patterns of aging in experimental populations, enabling investigations of the variation underlying senescence and the mechanisms governing it. Whole-genome sequencing of experimentally evolved populations may reveal candidate genomic variants underlying particular aging patterns; unfortunately, most study systems suffer from limitations that weaken associations between genotypes and phenotypes. In this review, we provide a survey of experimental evolution studies that have altered population-level patterns of reproductive timing and senescence in a variety of species. We discuss the specific selection conditions that have increased longevity, the phenotypic responses and trade-offs that accompany these increases, and examine genomic data collected from these experiments. Additionally, we consider how selected field studies complement laboratory experiments on life-history evolution. Finally, we address the strengths and weaknesses of existing study systems, and evaluate which model organisms appear most promising for future genomic investigations of the evolutionary biology of aging.

Genetic factors of functional traits

Selection of functional traits is a challenge for researchers, but an increasingly necessary objective due to the growing concern regarding animal welfare and overcoming the problems of reducing antibiotic use in rabbit production without undermining the animals’ productivity. The aim of this review is to discuss the genetic control of resistance to diseases, longevity and variability of birth weight within a litter, or litter size variability at birth within doe, describing the selection programmes and the first results from a multi-omics analysis of resistance/susceptibility to diseases. The heritability is around 0.13 for longevity, 0.01 for uniformity in birth weight, 0.09 for litter size variability and around 0.11 for disease resistance. Genetic correlations between functional traits and production traits are mostly no different from zero, or are moderately favourable in some cases. Six selection programmes developed in three countries are reviewed. Line foundation with high pressure for selection or divergent selection experiments are different methodologies used, and favourable responses to selection have been achieved. Genomics studies have revealed associations in regions related to immune system functionality and stress in lines selected for litter size variability. Knowledge of the role of gut microbiota in the rabbit’s immune response is very limited. A multi-omics approach can help determine the microbial mechanisms in regulation immunity genes of the host.

Functional longevity in five rabbit lines founded on different criteria: Comparison at foundation and at fixed times after selection

The enhancement of rabbit female functional longevity, that is the ability to avoid voluntary culling, is a paramount aspect for the sustainability of meat rabbit production; this trait represents a direct indicator of female robustness. The objective of our study was to compare the functional longevity of five rabbit lines at their foundation and at fixed times during their selection processes. Four of them are maternal lines (A, V, H and LP) selected for litter size at weaning. The fifth line is the paternal line R, founded and selected for post-weaning daily gain from 28 to 63 days. The comparison at foundation involved the complete data set (from March 1980 to March 2013; records of 15,670 does) and pedigree (19,405 animals). Latter comparisons were made when all lines shared the same environmental and management conditions, from March 1997 to September 1998 and from March 2011 to September 2012. In these second comparisons, the same model as that used in the comparison at foundation was used, but now the additive effect was excluded, only data from the corresponding periods were considered. At their foundation, lines V, H and LP showed larger functional longevity than lines A and R, being LP line that with the longest productive life. In the latter comparisons, lines A and R still showing the lowest functional longevities. However, as the selection process evolves, the differences between these two lines and the others were reduced. It could be concluded that the average longevity of a population greatly depends on the criteria followed for its foundation. In addition, along the selection for litter size, the differences of longevity between lines tend to decrease, this is due to an unintended selection for functional longevity, since only offspring from females reaching three parturitions are selected as breeding animals for the next generation.

Litter Survival Differences between Divergently Selected Lines for Environmental Sensitivity in Rabbits

Simple Summary

Two rabbit lines are divergently selected for increasing or decreasing the variability of litter size at birth. Decreasing the litter size variability produces more resilient females with less sensitivity to diseases, being an indirect selection way to improve environmental sensitivity. The kits’ survival rate at weaning was higher in the homogeneous line. Moreover, this line led to a greater uniformity of the kits’ weight at weaning, although the weight variability at birth was higher, which could be due to a higher lactation capacity of the homogeneous line.

Abstract

A divergent selection experiment on environmental sensitivity was performed in rabbits. The aim was to estimate the correlated response in kit weight and survival, litter weight, and weight distance from birth to weaning. The weight distance was calculated as the absolute value of the differences between the individual value and the mean value of its litter. The relationship between the probability of survival at 4 d of age, and the weight at birth, was studied. Environmental sensitivity was measured as litter size variability. A total of 2484 kits from 127 does from the low line, and 1916 kits of 114 does from the high line of the 12th generation were weighed. Both of the lines showed similar individual and litter weights at birth and weaning, and a similar survival rate at birth, and at 4 d of age. The survival rate at weaning was higher in the low line (0.67 and 0.62; P = 0.93). The weight distance was higher at birth, but lower at weaning in the low line (47.8 g and 54.1 g; P = 0.98). When the weight at birth was high, the kits had a higher survival rate. In conclusion, selection for environmental sensitivity showed a correlated response in the kits’ survival, and in the homogeneity of litter weight at weaning.

Effect of feed restriction on the environmental variability of birth weight in divergently selected lines of mice

BACKGROUND

Selection of mice for decreased environmental variability of birth weight has achieved higher survivability and larger litter size as a correlated response to canalized selection, which suggests higher welfare and robustness, and animals that are more homogeneous. However, in these studies, animals were not exposed to an environmental challenge. To demonstrate the advantages of this mouse line with a low environmental variability of birth weight, animals from two divergent lines (high and low variability of birth weight) were subjected to feed restriction. The objective of this study was to use these divergent lines to compare their response in terms of robustness against an environmental challenge. At weaning, 120 females, i.e. four full-sib females from 10 random litters of three consecutive generations of selection, were chosen from these divergent lines. The total number of females was divided into four groups, which were subjected to a feeding regimen by imposing different levels of feed restriction (i.e. 75, 90 and 85% of full ad libitum feed across three generations, respectively) in different combinations during the growth and reproduction periods.

RESULTS

Animals from the "low" line were less sensitive to a change in feed level than those from the "high" line. Regarding reproduction, the "low" line performed better in terms of number of females having parturitions, number of parturitions, and litter size. Imposing a feed restriction on female mice during their growth period did not affect the birth weight of their pups. The "low" line was preferred because of its higher reproductive efficiency and survival under an environmental challenge.

CONCLUSIONS

Selection for decreased environmental variability of birth weight produces animals that are less sensitive to environmental conditions, which can be interpreted as having greater robustness.

Energy balance and body reserves in rabbit females selected for longevity

<p>The aim of this study was to compare the energy balance and dynamic of body reserves in rabbit females divergently selected for longevity. One hundred and twenty-nine females from a high longevity line (HL) and 131 females of a low longevity line (LL) were studied from the 1^st to the 3^rd kindling. Litter size and weight and female body weight were measured at kindling (1^st, 2^nd and 3^rd), insemination (2^nd and 3^rd) and at weaning (1^st and 2^nd). The total body electric conductivity (TOBEC) method was used to estimate the body reserves in all females at artificial insemination and at weaning, and at kindling in females that achieved parturition. Energy balance between the 11^th and the 21^th d of lactation was also calculated for these females. No significant difference was found for fertility or for the number of offspring born alive and weaned. However, the total number of offspring born was higher in the LL line than in the HL line at the 2^nd parturition (+1.12±0.46 g; P&lt;0.05). Consequently, the number of stillborn offspring was higher in the LL line. LL females were 4% heavier than HL females at the first parturition (P&lt;0.05), but then HL females had a higher live weight gain than LL females from the 1st parturition to the 2^nd artificial insemination (+107.0±29 g; P=0.049), leading to a similar weight between the lines at the 2^nd artificial insemination. There was no significant difference between lines for estimated energy used for growth between the 11^th and the 21^th d of lactation, or for estimated milk production (2365±30 g in HL line vs. 2398±30 g in LL line), estimated using the weight gain of the kits between the 11^th and 21^st d of lactation, for feed intake measured during this period (351±5 g/d in HL line vs. 359±5 g/d in LL line) or for energy balance (–6.11±0.3 MJ in HL line vs. –6.30±0.3 MJ in LL line). However, body energy content was higher in HL females than in LL (+2.72±0.64 MJ; P=0.001). In conclusion, selection for higher functional longevity results in a better ability of females to use body reserves in their early reproductive life.</p>