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Özmen M, Özgen EK, Sayı O, Karadeniz Pütür E, Okumuş B, İba Yılmaz S, Aslan MH, Ulucan M, Yanmaz B, Şeri Foğlu Bağatir P, Turut N, Karahan Ş, Eroğlu B, Gülseren YÖ, Küçükayan U, Nuhay Ç, Eski I Zmi Rli Ler S, Saka E, Soysal Sarişahi N A, Deni Z İ, Bi Rben N, Karakuş K, Şen E, Sayteki N AM, Akar K. Genotyping of Brucella isolates from animals and humans by Multiple-Locus Variable-number Tandem Repeat Analysis (MLVA). Comp Immunol Microbiol Infect Dis 2023; 96:101981. [PMID: 37043846 DOI: 10.1016/j.cimid.2023.101981] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2023] [Revised: 04/03/2023] [Accepted: 04/06/2023] [Indexed: 04/14/2023]
Abstract
This study investigates country-wide genotype variations through the genotyping of Brucella strains isolated from domestic ruminants and humans. The Brucella spp. isolated from samples taken from animals and humans were first identified as B. abortus and B. melitensis by real-time PCR, and the MLVA-16 approach was then used for the genotyping of the identified isolates. For the study, 416 Brucella spp. were isolated from aborted fetus samples examined between 2018 and 2021, and 74 Brucella spp. from infected humans. Of the 74 human isolates analyzed, 1.3% were identified as B. abortus and 98.7% (73/74) as B. melitensis. The MLVA-16 typing method revealed 30 clonal groups for B. abortus and 37 clonal groups for B. melitensis from which the dominant genotypes and similarities with human isolates in Türkiye were determined.
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Affiliation(s)
- Murat Özmen
- Veterinary Control Institute, Republic of Türkiye Ministry of Agriculture and Forestry, Erzurum, Türkiye
| | - Ediz Kağan Özgen
- Veterinary Control Institute, Republic of Türkiye Ministry of Agriculture and Forestry, Erzurum, Türkiye.
| | - Orbay Sayı
- Veterinary Control Institute, Republic of Türkiye Ministry of Agriculture and Forestry, Erzurum, Türkiye
| | - Elif Karadeniz Pütür
- Veterinary Control Institute, Republic of Türkiye Ministry of Agriculture and Forestry, Erzurum, Türkiye
| | - Biray Okumuş
- Veterinary Control Institute, Republic of Türkiye Ministry of Agriculture and Forestry, Erzurum, Türkiye
| | - Sibel İba Yılmaz
- Depertmant of Infection Diseases and Clinical Microbiology, Health Sciences University Erzurum Regional Education and Research Hospital, Erzurum, Türkiye
| | - Mehtap Hülya Aslan
- Depertmant of Microbiology, Health Sciences University Erzurum Regional Education and Research Hospital, Erzurum, Türkiye
| | - Mustafa Ulucan
- İskilip District Directorate of Agriculture and Forestry, Çorum, Türkiye
| | - Berna Yanmaz
- Department of Veterinary Public Health, Faculty of Veterinary Medicine, Burdur Mehmet Akif Ersoy University, Burdur, Türkiye
| | - Perihan Şeri Foğlu Bağatir
- Veterinary Control Institute, Republic of Türkiye Ministry of Agriculture and Forestry, Erzurum, Türkiye
| | - Nevin Turut
- Veterinary Control Institute, Republic of Türkiye Ministry of Agriculture and Forestry, Adana, Türkiye
| | - Şifa Karahan
- Veterinary Control Institute, Republic of Türkiye Ministry of Agriculture and Forestry, Adana, Türkiye
| | - Buket Eroğlu
- Veterinary Control Institute, Republic of Türkiye Ministry of Agriculture and Forestry, İstanbul, Türkiye
| | - Yıldız Öz Gülseren
- Veterinary Control Institute, Republic of Türkiye Ministry of Agriculture and Forestry, İstanbul, Türkiye
| | - Uğur Küçükayan
- Veterinary Control Central Research Institute, Republic of Türkiye Ministry of Agriculture and Forestry, Ankara, Türkiye
| | - Çağatay Nuhay
- Veterinary Control Institute, Republic of Türkiye Ministry of Agriculture and Forestry, İzmir, Türkiye
| | - Seza Eski I Zmi Rli Ler
- Veterinary Control Institute, Republic of Türkiye Ministry of Agriculture and Forestry, İzmir, Türkiye
| | - Erdem Saka
- Veterinary Control Institute, Republic of Türkiye, Ministry of Agriculture and Forestry, Samsun, Türkiye
| | - Asuman Soysal Sarişahi N
- Veterinary Control Institute, Republic of Türkiye Ministry of Agriculture and Forestry, Konya, Türkiye
| | - İbrahim Deni Z
- Veterinary Control Institute, Republic of Türkiye Ministry of Agriculture and Forestry, Konya, Türkiye
| | - Nurgül Bi Rben
- Veterinary Control Institute, Republic of Türkiye Ministry of Agriculture and Forestry, Elazığ, Türkiye
| | - Kerem Karakuş
- Veterinary Control Institute, Republic of Türkiye Ministry of Agriculture and Forestry, Elazığ, Türkiye
| | - Esra Şen
- Department of Brucellosis and Tuberculosis, Animal Health Quarantine Department Head, General Dırectorate of Food And Control, Ankara, Türkiye
| | - Ahmet Murat Sayteki N
- Department of Microbiology, Faculty of Veterinary Medicine, Harran University, Şanlıurfa, Türkiye
| | - Kadir Akar
- Department of Microbiology, Faculty of Veterinary Medicine, Van Yüzüncü Yıl University, Van, Türkiye
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Evaluation of the Genetic Profiles of Brucella melitensis Strain from Turkey using Multilocus Variable Number Tandem Repeat Analysis (MLVA) and Multilocus Sequence Typing (MLST) Techniques. Vet Microbiol 2022; 269:109423. [DOI: 10.1016/j.vetmic.2022.109423] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2021] [Revised: 02/10/2022] [Accepted: 04/01/2022] [Indexed: 11/24/2022]
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Johansen TB, Scheffer L, Jensen VK, Bohlin J, Feruglio SL. Whole-genome sequencing and antimicrobial resistance in Brucella melitensis from a Norwegian perspective. Sci Rep 2018; 8:8538. [PMID: 29867163 PMCID: PMC5986768 DOI: 10.1038/s41598-018-26906-3] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2018] [Accepted: 05/17/2018] [Indexed: 11/09/2022] Open
Abstract
Brucellosis is a rarely encountered infection in Norway. The aim of this study was to explore all Brucella melitensis isolates collected in Norway from 1999 to 2016 in relation to origin of infection and antimicrobial resistance patterns. A total of 23 isolates were analysed by whole-genome sequencing and compared with selected sequences of B. melitensis available from NCBI. Additionally, SNP analysis in antibiotic resistance determining genes was performed. The majority belonged to the East Mediterranean clade (genotype II), while the remaining isolates belonged to the African clade (genotype III). These results indicate that human brucellosis in Norway is related to travels or migration from the Middle East, Asia or Africa, in accordance with results from Germany, Denmark and Sweden. Antibiotic susceptibility patterns were determined by broth microdilution method and/or gradient strip method. All isolates were susceptible for all tested antibiotics, except for rifampicin where phenotypical results indicated resistance or intermediate resistance in all isolates based on broth microdilution method, and in four isolates based on gradient strip testing. In contrast, screening of the rpoB gene did not reveal any mutations in the previously described rpoB "hot spot" regions related to rifampicin resistance, indicating overestimation of resistance based on phenotypical results.
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Affiliation(s)
- Tone B Johansen
- Division of Infection Control and Environmental Health, Norwegian Institute of Public Health, PO Box 4404 Nydalen, N-0403, Oslo, Norway.
| | - Lonneke Scheffer
- Division of Infection Control and Environmental Health, Norwegian Institute of Public Health, PO Box 4404 Nydalen, N-0403, Oslo, Norway
- Hanze University of Applied Sciences, Zernikeplein 7, 9747 AS, Groningen, The Netherlands
- Department of Informatics, University of Oslo, P.O. Box 1072 Blindern, 0316, Oslo, Norway
| | - Veronica K Jensen
- Division of Infection Control and Environmental Health, Norwegian Institute of Public Health, PO Box 4404 Nydalen, N-0403, Oslo, Norway
| | - Jon Bohlin
- Division of Infection Control and Environmental Health, Norwegian Institute of Public Health, PO Box 4404 Nydalen, N-0403, Oslo, Norway
| | - Siri L Feruglio
- Division of Infection Control and Environmental Health, Norwegian Institute of Public Health, PO Box 4404 Nydalen, N-0403, Oslo, Norway
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Georgi E, Walter MC, Pfalzgraf MT, Northoff BH, Holdt LM, Scholz HC, Zoeller L, Zange S, Antwerpen MH. Whole genome sequencing of Brucella melitensis isolated from 57 patients in Germany reveals high diversity in strains from Middle East. PLoS One 2017; 12:e0175425. [PMID: 28388689 PMCID: PMC5384748 DOI: 10.1371/journal.pone.0175425] [Citation(s) in RCA: 58] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2016] [Accepted: 03/24/2017] [Indexed: 01/31/2023] Open
Abstract
Brucellosis, a worldwide common bacterial zoonotic disease, has become quite rare in Northern and Western Europe. However, since 2014 a significant increase of imported infections caused by Brucella (B.) melitensis has been noticed in Germany. Patients predominantly originated from Middle East including Turkey and Syria. These circumstances afforded an opportunity to gain insights into the population structure of Brucella strains. Brucella-isolates from 57 patients were recovered between January 2014 and June 2016 with culture confirmed brucellosis by the National Consultant Laboratory for Brucella. Their whole genome sequences were generated using the Illumina MiSeq platform. A whole genome-based SNP typing assay was developed in order to resolve geographically attributed genetic clusters. Results were compared to MLVA typing results, the current gold-standard of Brucella typing. In addition, sequences were examined for possible genetic variation within target regions of molecular diagnostic assays. Phylogenetic analyses revealed spatial clustering and distinguished strains from different patients in either case, whereas multiple isolates from a single patient or technical replicates showed identical SNP and MLVA profiles. By including WGS data from the NCBI database, five major genotypes were identified. Notably, strains originating from Turkey showed a high diversity and grouped into seven subclusters of genotype II. MLVA analysis congruently clustered all isolates and predominantly matched the East Mediterranean genetic clade. This study confirms whole-genome based SNP-analysis as a powerful tool for accurate typing of B. melitensis. Furthermore it allows special allocation and therefore provides useful information on the geographic origin for trace-back analysis. However, the lack of reliable metadata in public databases often prevents a resolution below geographic regions or country levels and corresponding precise trace-back analysis. Once this obstacle is resolved, WGS-derived bacterial typing adds an important method to complement epidemiological surveys during outbreak investigations. This is the first report of a detailed genetic investigation of an extensive collection of B. melitensis strains isolated from human cases in Germany.
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Affiliation(s)
- Enrico Georgi
- Bundeswehr Institute of Microbiology, Munich, Germany
| | | | | | - Bernd H. Northoff
- Institute of Laboratory Medicine, Ludwig-Maximilians University, Munich, Germany
| | - Lesca M. Holdt
- Institute of Laboratory Medicine, Ludwig-Maximilians University, Munich, Germany
| | - Holger C. Scholz
- Bundeswehr Institute of Microbiology, Munich, Germany
- National Consultant Laboratory for Brucella, Munich, Germany
| | - Lothar Zoeller
- Bundeswehr Institute of Microbiology, Munich, Germany
- National Consultant Laboratory for Brucella, Munich, Germany
| | - Sabine Zange
- Bundeswehr Institute of Microbiology, Munich, Germany
- National Consultant Laboratory for Brucella, Munich, Germany
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Bamaiyi PH. Prevalence and risk factors of brucellosis in man and domestic animals: A review. INTERNATIONAL JOURNAL OF ONE HEALTH 2016. [DOI: 10.14202/ijoh.2016.29-34] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
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Garofolo G, Fasanella A, Di Giannatale E, Platone I, Sacchini L, Persiani T, Boskani T, Rizzardi K, Wahab T. Cases of human brucellosis in Sweden linked to Middle East and Africa. BMC Res Notes 2016; 9:277. [PMID: 27188619 PMCID: PMC4869368 DOI: 10.1186/s13104-016-2074-7] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2015] [Accepted: 05/04/2016] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Human brucellosis cases are still reported each year in Sweden despite eradication of the disease in animals. Epidemiological investigation has never been conducted to trace back the source of human infection in the country. The purpose of the study was to identify the source of infection for 16 human brucellosis cases that occurred in Sweden, during the period 2008-2012. RESULTS The isolates were identified as Brucella melitensis and MLVA-16 genotyping revealed 14 different genotypes of East Mediterranean and Africa lineages. We also reported one case of laboratory-acquired brucellosis (LAB) that was shown to be epidemiological linked to one of the cases in the current study. CONCLUSIONS Brucella melitensis was the only species diagnosed, confirming its highest zoonotic potential in the genus Brucella, and MLVA-16 results demonstrated that the cases of brucellosis in Sweden herein investigated, are imported and linked to travel in the Middle East and Africa. Due to its zoonotic concerns, any acute febrile illness linked to recent travel within those regions should be investigated for brucellosis and samples should be processed according to biosafety level 3 regulations.
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Affiliation(s)
- Giuliano Garofolo
- />National and OIE Reference Laboratory for Brucellosis, Istituto Zooprofilattico Sperimentale dell’Abruzzo e del Molise “G. Caporale”, Teramo, Italy
| | - Antonio Fasanella
- />Istituto Zooprofilattico Sperimentale della Puglia e della Basilicata, Foggia, Italy
| | - Elisabetta Di Giannatale
- />National and OIE Reference Laboratory for Brucellosis, Istituto Zooprofilattico Sperimentale dell’Abruzzo e del Molise “G. Caporale”, Teramo, Italy
| | - Ilenia Platone
- />National and OIE Reference Laboratory for Brucellosis, Istituto Zooprofilattico Sperimentale dell’Abruzzo e del Molise “G. Caporale”, Teramo, Italy
| | - Lorena Sacchini
- />National and OIE Reference Laboratory for Brucellosis, Istituto Zooprofilattico Sperimentale dell’Abruzzo e del Molise “G. Caporale”, Teramo, Italy
| | - Tiziana Persiani
- />National and OIE Reference Laboratory for Brucellosis, Istituto Zooprofilattico Sperimentale dell’Abruzzo e del Molise “G. Caporale”, Teramo, Italy
| | - Talar Boskani
- />Department of Microbiology, Public Health Agency of Sweden, Stockholm, Sweden
| | - Kristina Rizzardi
- />Department of Microbiology, Public Health Agency of Sweden, Stockholm, Sweden
| | - Tara Wahab
- />Department of Microbiology, Public Health Agency of Sweden, Stockholm, Sweden
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MUCHOWSKI JK, KOYLASS MS, DAINTY AC, STACK JA, PERRETT L, WHATMORE AM, PERRIER C, CHIRCOP S, DEMICOLI N, GATT AB, CARUANA PA, GOPAUL KK. Using molecular tools to identify the geographical origin of a case of human brucellosis. Epidemiol Infect 2015; 143:3110-3. [PMID: 25697304 PMCID: PMC9151018 DOI: 10.1017/s0950268814003896] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2014] [Revised: 12/08/2014] [Accepted: 12/17/2014] [Indexed: 11/06/2022] Open
Abstract
Although Malta is historically linked with the zoonosis brucellosis, there had not been a case of the disease in either the human or livestock population for several years. However, in July 2013 a case of human brucellosis was identified on the island. To determine whether this recent case originated in Malta, four isolates from this case were subjected to molecular analysis. Molecular profiles generated using multilocus sequence analysis and multilocus variable number tandem repeat for the recent human case isolates and 11 Brucella melitensis strains of known Maltese origin were compared with others held on in-house and global databases. While the 11 isolates of Maltese origin formed a distinct cluster, the recent human isolation was not associated with these strains but instead clustered with isolates originating from the Horn of Africa. These data was congruent with epidemiological trace-back showed that the individual had travelled to Malta from Eritrea. This work highlights the potential of using molecular typing data to aid in epidemiological trace-back of Brucella isolations and assist in monitoring of the effectiveness of brucellosis control schemes.
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Affiliation(s)
- J. K. MUCHOWSKI
- Bacterial Characterisation Workgroup, Department of Bacteriology, APHA Weybridge, Addlestone, Surrey, UK
| | - M. S. KOYLASS
- Bacterial Characterisation Workgroup, Department of Bacteriology, APHA Weybridge, Addlestone, Surrey, UK
| | - A. C. DAINTY
- Bacterial Characterisation Workgroup, Department of Bacteriology, APHA Weybridge, Addlestone, Surrey, UK
| | - J. A. STACK
- Bacterial Characterisation Workgroup, Department of Bacteriology, APHA Weybridge, Addlestone, Surrey, UK
| | - L. PERRETT
- Bacterial Characterisation Workgroup, Department of Bacteriology, APHA Weybridge, Addlestone, Surrey, UK
| | - A. M. WHATMORE
- Bacterial Characterisation Workgroup, Department of Bacteriology, APHA Weybridge, Addlestone, Surrey, UK
| | - C. PERRIER
- Bacterial Characterisation Workgroup, Department of Bacteriology, APHA Weybridge, Addlestone, Surrey, UK
- Université de Nîmes, Nimes, France
| | - S. CHIRCOP
- Veterinary Regulation Directorate, Marsa, Malta
| | - N. DEMICOLI
- Veterinary Regulation Directorate, Marsa, Malta
| | - A. B. GATT
- Health Promotion and Disease Prevention Directorate, Msida, Malta
| | | | - K. K. GOPAUL
- Bacterial Characterisation Workgroup, Department of Bacteriology, APHA Weybridge, Addlestone, Surrey, UK
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Shevtsov A, Ramanculov E, Shevtsova E, Kairzhanova A, Tarlykov P, Filipenko M, Dymova M, Abisheva G, Jailbekova A, Kamalova D, Chsherbakov A, Tulegenov S, Akhmetova A, Sytnik I, Karibaev T, Mukanov K. Genetic diversity of Brucella abortus and Brucella melitensis in Kazakhstan using MLVA-16. INFECTION GENETICS AND EVOLUTION 2015; 34:173-80. [PMID: 26160544 DOI: 10.1016/j.meegid.2015.07.008] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2015] [Revised: 07/01/2015] [Accepted: 07/06/2015] [Indexed: 10/23/2022]
Abstract
Brucellosis is an endemic disease in Central Asia characterized by high infection rates in humans and animals. Currently, little is known about the genetic diversity of Brucella spp. circulating in the region, despite the high prevalence of brucellosis. This study aimed to analyze the genetic diversity of Brucella melitensis and Brucella abortus strains circulating in the Republic of Kazakhstan. We genotyped 128 B. melitensis and 124 B. abortus strains collected in regions with the highest prevalence of brucellosis. Genotyping was performed using multi-locus variable-number tandem-repeat analysis (MLVA). Analysis of a subset of 8 loci (MLVA-8) of 128 B. melitensis strains identified genotypes 42 (n=108), 43 (n=2), and 63 (n=19) related to the 'East Mediterranean' group. An MLVA-16 assay sorted 128 B. melitensis strains into 25 different genotypes. Excluding one variable locus, MLVA-15 of B. melitensis was distinct from strains originating in the Mediterranean region; however, 77% of them were identical to strains isolated in China. A minimum spanning tree for B. melitensis using MLVA-15 analysis clustered the local strains together with strains previously collected in China. MLVA-8 analysis of 124 B. abortus strains identified them as genotype 36, suggesting Eurasian distribution of this lineage. Complete MLVA-16 assay analysis clustered the strains into five genotypes, revealing little diversity of B. abortus when compared on the global scale. A minimum spanning tree for B. abortus obtained using MLVA-15 analysis clustered the 2 most prevalent genotypes (n=117) together with strains previously collected in China. Thus, MLVA analysis was used to characterize 252 strains of Brucella collected in Kazakhstan. The analysis revealed genetic homogeneity among the strains. Interestingly, identical MLVA-15 profiles were found in seemingly unrelated outbreaks in China, Turkey, and Kazakhstan. Further analysis is needed for better understanding of the epidemiology of brucellosis in Asia.
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Affiliation(s)
- Alexandr Shevtsov
- National Center for Biotechnology, 13/1 Valikhanov Str, 010000 Astana, Kazakhstan.
| | - Erlan Ramanculov
- National Center for Biotechnology, 13/1 Valikhanov Str, 010000 Astana, Kazakhstan; School of Science and Technology, Nazarbayev University, 53 Kabanbay Batyr Ave, 010000 Astana, Kazakhstan.
| | - Elena Shevtsova
- National Center for Biotechnology, 13/1 Valikhanov Str, 010000 Astana, Kazakhstan
| | - Alma Kairzhanova
- National Center for Biotechnology, 13/1 Valikhanov Str, 010000 Astana, Kazakhstan
| | - Pavel Tarlykov
- National Center for Biotechnology, 13/1 Valikhanov Str, 010000 Astana, Kazakhstan.
| | - Maxim Filipenko
- National Center for Biotechnology, 13/1 Valikhanov Str, 010000 Astana, Kazakhstan; Institute of Chemical Biology and Fundamental Medicine, 8 Lavrentev Str, 630000 Novosibirsk, Russian Federation; Novosibirsk State University, 2 Pirogov Str, 630090 Novosibirsk, Russian Federation.
| | - Maya Dymova
- Institute of Chemical Biology and Fundamental Medicine, 8 Lavrentev Str, 630000 Novosibirsk, Russian Federation; Novosibirsk State University, 2 Pirogov Str, 630090 Novosibirsk, Russian Federation
| | - Gulzada Abisheva
- National Center for Biotechnology, 13/1 Valikhanov Str, 010000 Astana, Kazakhstan
| | - Aygul Jailbekova
- National Reference Center for Veterinary, 22/3 150-let Abaya, 010000 Astana, Kazakhstan
| | - Dinara Kamalova
- National Center for Biotechnology, 13/1 Valikhanov Str, 010000 Astana, Kazakhstan
| | - Andrei Chsherbakov
- National Reference Center for Veterinary, 22/3 150-let Abaya, 010000 Astana, Kazakhstan
| | - Samat Tulegenov
- National Reference Center for Veterinary, 22/3 150-let Abaya, 010000 Astana, Kazakhstan
| | - Assel Akhmetova
- National Reference Center for Veterinary, 22/3 150-let Abaya, 010000 Astana, Kazakhstan
| | - Igor Sytnik
- National Reference Center for Veterinary, 22/3 150-let Abaya, 010000 Astana, Kazakhstan.
| | - Talgat Karibaev
- National Reference Center for Veterinary, 22/3 150-let Abaya, 010000 Astana, Kazakhstan
| | - Kasim Mukanov
- National Center for Biotechnology, 13/1 Valikhanov Str, 010000 Astana, Kazakhstan.
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Ferreira AC, Chambel L, Tenreiro T, Cardoso R, Flor L, Dias IT, Pacheco T, Garin-Bastuji B, Le Flèche P, Vergnaud G, Tenreiro R, de Sá MIC. MLVA16 typing of Portuguese human and animal Brucella melitensis and Brucella abortus isolates. PLoS One 2012; 7:e42514. [PMID: 22905141 PMCID: PMC3419166 DOI: 10.1371/journal.pone.0042514] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2012] [Accepted: 07/06/2012] [Indexed: 12/30/2022] Open
Abstract
To investigate the epidemiological relationship of isolates from different Portuguese geographical regions and to assess the diversity among isolates, the MLVA16Orsay assay (panels 1, 2A and 2B) was performed with a collection of 126 Brucella melitensis (46 human and 80 animal isolates) and 157 B. abortus field isolates, seven vaccine strains and the representative reference strains of each species. The MLVA16Orsay showed a similar high discriminatory power (HGDI 0.972 and 0.902) for both species but panel 1 and 2A markers displayed higher diversity (HGDI 0.693) in B. abortus compared to B. melitensis isolates (HGDI 0.342). The B. melitensis population belong to the “Americas” (17%) and “East Mediterranean” (83%) groups. No isolate belonged to the “West Mediterranean” group. Eighty-five percent of the human isolates (39 in 46) fit in the “East-Mediterranean” group where a single lineage known as MLVA11 genotype 116 is responsible for the vast majority of Brucella infections in humans. B. abortus isolates formed a consistent group with bv1 and bv3 isolates in different clusters. Four MLVA11 genotypes were observed for the first time in isolates from S. Jorge and Terceira islands from Azores. From the collection of isolates analysed in this study we conclude that MLVA16Orsay provided a clear view of Brucella spp. population, confirming epidemiological linkage in outbreak investigations. In particular, it suggests recent and ongoing colonisation of Portugal with one B. melitensis lineage usually associated with East Mediterranean countries.
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Affiliation(s)
- Ana Cristina Ferreira
- Laboratório Nacional de Investigação Veterinária, Instituto Nacional de Recursos Biológicos, IP, Lisboa, Portugal.
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Kemp M, Dargis R, Andresen K, Christensen JJE. A program against bacterial bioterrorism: improved patient management and acquisition of new knowledge on infectious diseases. Biosecur Bioterror 2012; 10:203-7. [PMID: 22571372 DOI: 10.1089/bsp.2011.0055] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
In 2002 it was decided to establish laboratory facilities in Denmark for diagnosing agents associated with bioterrorism in order to make an immediate appropriate response to the release of such agents possible. Molecular assays for detection of specific agents and molecular and proteomic techniques for identification of bacteria were introduced as part of the program. All assays and techniques were made accessible for use in diagnosing patients, even when an intentional release was not suspected. Medical expertise on different diseases was established at the department as an integrated part of the program. The analyses included PCR assays for specific bacteria, identification of isolated bacteria by DNA sequencing, detection and identification of bacteria in clinical sample material by universal bacterial PCR and DNA sequencing, and identification of bacteria by mass spectrometry. The established analyses formed a basis on which a series of further developments was built. In addition to reducing the time for obtaining diagnoses and improving the accuracy of diagnosis of individual infected patients, the analyses provided new knowledge on the frequency and distribution of some bacterial infections, including Q fever, tularemia, trench fever, brucellosis, and melioidosis. The implementation of an antibioterrorism program in a clinical diagnostic setting improved the diagnostic possibilities for patients in Denmark and provided new epidemiologic information. It also introduced a number of diagnostic assays for bacterial infections not associated with bioterrorism that are difficult to culture or identify.
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Affiliation(s)
- Michael Kemp
- Department of Clinical Microbiology, Odense University Hospital, Odense, Denmark.
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