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Sampaio PN, Calado CCR. Enhancing Bioactive Compound Classification through the Synergy of Fourier-Transform Infrared Spectroscopy and Advanced Machine Learning Methods. Antibiotics (Basel) 2024; 13:428. [PMID: 38786156 PMCID: PMC11117366 DOI: 10.3390/antibiotics13050428] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2024] [Revised: 04/29/2024] [Accepted: 05/07/2024] [Indexed: 05/25/2024] Open
Abstract
Bacterial infections and resistance to antibiotic drugs represent the highest challenges to public health. The search for new and promising compounds with anti-bacterial activity is a very urgent matter. To promote the development of platforms enabling the discovery of compounds with anti-bacterial activity, Fourier-Transform Mid-Infrared (FT-MIR) spectroscopy coupled with machine learning algorithms was used to predict the impact of compounds extracted from Cynara cardunculus against Escherichia coli. According to the plant tissues (seeds, dry and fresh leaves, and flowers) and the solvents used (ethanol, methanol, acetone, ethyl acetate, and water), compounds with different compositions concerning the phenol content and antioxidant and antimicrobial activities were obtained. A principal component analysis of the spectra allowed us to discriminate compounds that inhibited E. coli growth according to the conventional assay. The supervised classification models enabled the prediction of the compounds' impact on E. coli growth, showing the following values for accuracy: 94% for partial least squares-discriminant analysis; 89% for support vector machine; 72% for k-nearest neighbors; and 100% for a backpropagation network. According to the results, the integration of FT-MIR spectroscopy with machine learning presents a high potential to promote the discovery of new compounds with antibacterial activity, thereby streamlining the drug exploratory process.
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Affiliation(s)
- Pedro N Sampaio
- COPELABS-Computação e Cognição Centrada nas Pessoas, Faculty of Engineering, Lusófona University, Campo Grande, 376, 1749-024 Lisbon, Portugal
- GREEN-IT-BioResources for Sustainability Unit, Institute of Chemical and Biological Technology António Xavier, ITQB NOVA, Av. da República, 2780-157 Oeiras, Portugal
| | - Cecília C R Calado
- ISEL-Instituto Superior de Engenharia de Lisboa, Instituto Politécnico de Lisboa, Rua Conselheiro Emídio Navarro 1, 1959-007 Lisbon, Portugal
- iBB-Institute for Bioengineering and Biosciences, i4HB-The Associate Laboratory Institute for Health and Bioeconomy, IST-Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais, 1049-001 Lisbon, Portugal
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2
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The Biosynthesis and Medicinal Properties of Taraxerol. Biomedicines 2022; 10:biomedicines10040807. [PMID: 35453556 PMCID: PMC9025716 DOI: 10.3390/biomedicines10040807] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2022] [Revised: 02/24/2022] [Accepted: 02/25/2022] [Indexed: 02/04/2023] Open
Abstract
Taraxerol is a pentacyclic triterpenoid that is actively produced by some higher plants as part of a defense mechanism. The biosynthesis of taraxerol in plants occurs through the mevalonate pathway in the cytosol, in which dimethylallyl diphosphate (DMAPP) and isopentyl pyrophosphate (IPP) are first produced, followed by squalene. Squalene is the primary precursor for the synthesis of triterpenoids, including taraxerol, β-amyrin, and lupeol, which are catalyzed by taraxerol synthase. Taraxerol has been extensively investigated for its medicinal and pharmacological properties, and various biotechnological approaches have been established to produce this compound using in vitro techniques. This review provides an in-depth summary of the hypothesized taraxerol biosynthetic pathway, the medicinal properties of taraxerol, and recent developments on tissue culture for the in vitro production of taraxerol.
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Velasco-Azorsa R, Cruz-Santiago H, Cid del Prado-Vera I, Ramirez-Mares MV, Gutiérrez-Ortiz MDR, Santos-Sánchez NF, Salas-Coronado R, Villanueva-Cañongo C, Lira-de León KI, Hernández-Carlos B. Chemical Characterization of Plant Extracts and Evaluation of their Nematicidal and Phytotoxic Potential. Molecules 2021; 26:molecules26082216. [PMID: 33921412 PMCID: PMC8070253 DOI: 10.3390/molecules26082216] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2021] [Revised: 04/02/2021] [Accepted: 04/09/2021] [Indexed: 11/16/2022] Open
Abstract
Nacobbus aberrans ranks among the "top ten" plant-parasitic nematodes of phytosanitary importance. It causes significant losses in commercial interest crops in America and is a potential risk in the European Union. The nematicidal and phytotoxic activities of seven plant extracts against N. aberrans and Solanum lycopersicum were evaluated in vitro, respectively. The chemical nature of three nematicidal extracts (EC50,48h ≤ 113 µg mL-1) was studied through NMR analysis. Plant extracts showed nematicidal activity on second-stage juveniles (J2): (≥87%) at 1000 µg mL-1 after 72 h, and their EC50 values were 71.4-468.1 and 31.5-299.8 µg mL-1 after 24 and 48 h, respectively. Extracts with the best nematicidal potential (EC50,48h < 113 µg mL-1) were those from Adenophyllum aurantium, Alloispermum integrifolium, and Tournefortia densiflora, which inhibited L. esculentum seed growth by 100% at 20 µg mL-1. Stigmasterol (1), β-sitosterol (2), and α-terthienyl (3) were identified from A. aurantium, while 1, 2, lutein (4), centaurin (5), patuletin-7-β-O-glucoside (6), pendulin (7), and penduletin (8) were identified from A. integrifolium. From T. densiflora extract, allantoin (9), 9-O-angeloyl-retronecine (10), and its N-oxide (11) were identified. The present research is the first to report the effect of T. densiflora, A. integrifolium, and A. aurantium against N. aberrans and chemically characterized nematicidal extracts that may provide alternative sources of botanical nematicides.
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Affiliation(s)
- Raúl Velasco-Azorsa
- Instituto de Recursos, Universidad del Mar, Puerto Ángel, San Pedro Pochutla, Oaxaca 70902, Mexico;
| | - Héctor Cruz-Santiago
- Instituto de Agroindustrias, Universidad Tecnológica de la Mixteca, Acatlima, Huajuapan de León, Oaxaca 69000, Mexico; (H.C.-S.); (N.F.S.-S.); (R.S.-C.); (C.V.-C.)
| | - Ignacio Cid del Prado-Vera
- Colegio de Postgraduados, km 36.5 Carretera México-Texcoco, Montecillos, Estado de Mexico, Texcoco 56230, Mexico;
| | - Marco Vinicio Ramirez-Mares
- Departamento de Ingeniería Química y Bioquímica, Tecnológico Nacional de México/I.T. Morelia, Av. Tecnológico 1500, Lomas de Santiaguito, Morelia 58120, Mexico;
| | | | - Norma Francenia Santos-Sánchez
- Instituto de Agroindustrias, Universidad Tecnológica de la Mixteca, Acatlima, Huajuapan de León, Oaxaca 69000, Mexico; (H.C.-S.); (N.F.S.-S.); (R.S.-C.); (C.V.-C.)
| | - Raúl Salas-Coronado
- Instituto de Agroindustrias, Universidad Tecnológica de la Mixteca, Acatlima, Huajuapan de León, Oaxaca 69000, Mexico; (H.C.-S.); (N.F.S.-S.); (R.S.-C.); (C.V.-C.)
| | - Claudia Villanueva-Cañongo
- Instituto de Agroindustrias, Universidad Tecnológica de la Mixteca, Acatlima, Huajuapan de León, Oaxaca 69000, Mexico; (H.C.-S.); (N.F.S.-S.); (R.S.-C.); (C.V.-C.)
| | | | - Beatriz Hernández-Carlos
- Instituto de Agroindustrias, Universidad Tecnológica de la Mixteca, Acatlima, Huajuapan de León, Oaxaca 69000, Mexico; (H.C.-S.); (N.F.S.-S.); (R.S.-C.); (C.V.-C.)
- Correspondence: ; Tel.: +52-9535320399
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Grochowski DM, Locatelli M, Granica S, Cacciagrano F, Tomczyk M. A Review on the Dietary Flavonoid Tiliroside. Compr Rev Food Sci Food Saf 2018; 17:1395-1421. [PMID: 33350157 DOI: 10.1111/1541-4337.12389] [Citation(s) in RCA: 41] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2018] [Revised: 07/17/2018] [Accepted: 07/25/2018] [Indexed: 12/12/2022]
Abstract
Among flavonoid derivatives, tiliroside is a flavonoid contained in several edible plants or specific plant parts (fruits, leaves, or roots). These parts are often widely used as both food and medicines, in the treatment of various ailments and, in some cases, as food supplements. Considering the easy access to many publications concerning tiliroside and the lack of a review that summarizes the current progress in studies on its safety, efficacy, and presence in the plant kingdom, we present here a review paper on tiliroside and its principal derivatives. The paper also highlights the basic knowledge regarding this molecule, its derivatives, and the analytical approaches used for extraction and quantification, as well as reports on the biological activities against different key enzymes linked to various human diseases. The reported information is also devoted to highlighting the concept "learn from nature to discover new products," particularly in the development of new drugs, food supplements, and nutraceuticals, starting from a natural lead compound such as tiliroside and improving its biological activities (and selectivities) against a specific target for therapeutic purposes.
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Affiliation(s)
- Daniel M Grochowski
- Dept. of Pharmacognosy, Faculty of Pharmacy with the Div. of Laboratory Medicine, Medical Univ. of Białystok, Białystok, Poland
| | - Marcello Locatelli
- Dept. of Pharmacy, Univ. "G. d'Annunzio" of Chieti-Pescara, Chieti, Italy
| | - Sebastian Granica
- Dept. of Pharmacognosy and Molecular Basis of Phytotherapy, Faculty of Pharmacy, Warsaw Medical Univ., Warsaw, Poland
| | | | - Michał Tomczyk
- Dept. of Pharmacognosy, Faculty of Pharmacy with the Div. of Laboratory Medicine, Medical Univ. of Białystok, Białystok, Poland
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Berté TE, Dalmagro AP, Zimath PL, Gonçalves AE, Meyre-Silva C, Bürger C, Weber CJ, Dos Santos DA, Cechinel-Filho V, de Souza MM. Taraxerol as a possible therapeutic agent on memory impairments and Alzheimer's disease: Effects against scopolamine and streptozotocin-induced cognitive dysfunctions. Steroids 2018; 132:5-11. [PMID: 29355563 DOI: 10.1016/j.steroids.2018.01.002] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/17/2017] [Revised: 12/19/2017] [Accepted: 01/11/2018] [Indexed: 01/23/2023]
Abstract
Alzheimer's disease (AD) is a neurodegenerative disorder associated with cognitive impairment and cholinergic neuronal death, characteristic of the effect of time on biochemical neuronal function. The use of medicinal plants as an alternative form of prevention, or even as a possible treatment of AD, is therefore interesting areas of research, since the standard drugs have many side effects. Taraxerol (TRX) is a triterpene that has been isolated from several plant species, and its various pharmacological properties have already been identified, such the acetylcholinesterase (AChE) inhibition activity in vitro. There is a lack of information in literature that confirms the effect of TRX in an animal AD-like model. Seeking to fill this gap in the literature, in the present work we assessed the effect of TRX on AChE activity in the animals' encephalon and hippocampus. We also investigated the effect of TRX (1.77 µM/side, 0.5 μL) isolated from leaves of Eugenia umbelliflora Berg. on aversive memory impairments induced by scopolamine (2 µg/side, 0.5 µL) infused into rat hippocampus, and the effect of TRX (0.89 and 1.77 µM/side, 0.5 μL) on aversive memory impairments induced by streptozotocin (STZ) (2.5 mg/mL, 2.0 µL) infused i.c.v. into mice, using the step-down inhibitory avoidance task. We found that TRX significantly inhibited AChE activity in the animal's hippocampus. Furthermore, TRX significantly improved scopolamine and STZ-induced memory impairment. Taking together, these results confirms its AChE activity inhibition in animals and indicate that TRX has anti-amnesic activity that may hold significant therapeutic value in alleviating certain memory impairments observed in AD.
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Affiliation(s)
- Talita Elisa Berté
- Centro de Ciências da Saúde, CCS - Núcleo de Investigações Químico Farmacêuticas NIQFAR/UNIVALI, Rua Uruguai 458, Centro, CEP: 88302-202 Itajaí, SC, Brazil
| | - Ana Paula Dalmagro
- Centro de Ciências da Saúde, CCS - Núcleo de Investigações Químico Farmacêuticas NIQFAR/UNIVALI, Rua Uruguai 458, Centro, CEP: 88302-202 Itajaí, SC, Brazil; Programa de Pós-Graduação em Ciências Farmacêuticas/UNIVALI, Rua Uruguai 458, Centro, CEP: 88302-202 Itajaí, SC, Brazil.
| | - Priscila Laiz Zimath
- Centro de Ciências da Saúde, CCS - Núcleo de Investigações Químico Farmacêuticas NIQFAR/UNIVALI, Rua Uruguai 458, Centro, CEP: 88302-202 Itajaí, SC, Brazil; Programa de Pós-Graduação em Ciências Farmacêuticas/UNIVALI, Rua Uruguai 458, Centro, CEP: 88302-202 Itajaí, SC, Brazil
| | - Ana Elisa Gonçalves
- Centro de Ciências da Saúde, CCS - Núcleo de Investigações Químico Farmacêuticas NIQFAR/UNIVALI, Rua Uruguai 458, Centro, CEP: 88302-202 Itajaí, SC, Brazil; Programa de Pós-Graduação em Ciências Farmacêuticas/UNIVALI, Rua Uruguai 458, Centro, CEP: 88302-202 Itajaí, SC, Brazil
| | - Christiane Meyre-Silva
- Centro de Ciências da Saúde, CCS - Núcleo de Investigações Químico Farmacêuticas NIQFAR/UNIVALI, Rua Uruguai 458, Centro, CEP: 88302-202 Itajaí, SC, Brazil; Programa de Pós-Graduação em Ciências Farmacêuticas/UNIVALI, Rua Uruguai 458, Centro, CEP: 88302-202 Itajaí, SC, Brazil
| | - Cristiani Bürger
- Centro de Ciências da Saúde, CCS - Núcleo de Investigações Químico Farmacêuticas NIQFAR/UNIVALI, Rua Uruguai 458, Centro, CEP: 88302-202 Itajaí, SC, Brazil
| | - Carla J Weber
- Centro de Ciências da Saúde, CCS - Núcleo de Investigações Químico Farmacêuticas NIQFAR/UNIVALI, Rua Uruguai 458, Centro, CEP: 88302-202 Itajaí, SC, Brazil
| | - Diogo Adolfo Dos Santos
- Centro de Ciências da Saúde, CCS - Núcleo de Investigações Químico Farmacêuticas NIQFAR/UNIVALI, Rua Uruguai 458, Centro, CEP: 88302-202 Itajaí, SC, Brazil
| | - Valdir Cechinel-Filho
- Centro de Ciências da Saúde, CCS - Núcleo de Investigações Químico Farmacêuticas NIQFAR/UNIVALI, Rua Uruguai 458, Centro, CEP: 88302-202 Itajaí, SC, Brazil; Programa de Pós-Graduação em Ciências Farmacêuticas/UNIVALI, Rua Uruguai 458, Centro, CEP: 88302-202 Itajaí, SC, Brazil
| | - Márcia M de Souza
- Centro de Ciências da Saúde, CCS - Núcleo de Investigações Químico Farmacêuticas NIQFAR/UNIVALI, Rua Uruguai 458, Centro, CEP: 88302-202 Itajaí, SC, Brazil; Programa de Pós-Graduação em Ciências Farmacêuticas/UNIVALI, Rua Uruguai 458, Centro, CEP: 88302-202 Itajaí, SC, Brazil
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Oza MJ, Kulkarni YA. Traditional uses, phytochemistry and pharmacology of the medicinal species of the genus Cordia (Boraginaceae). ACTA ACUST UNITED AC 2017; 69:755-789. [PMID: 28266011 DOI: 10.1111/jphp.12715] [Citation(s) in RCA: 39] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2016] [Accepted: 01/26/2017] [Indexed: 11/30/2022]
Abstract
OBJECTIVES Cordia (family Boraginaceae) is a genus of deciduous flowering trees or shrubs comprising more than 300 species distributed widely in the tropical regions. The aim of this review was to provide exhaustive scientific information on traditional uses, phytochemistry and pharmacological activities of the 36 important species with medicinal value from the genus Cordia, to divulge prospects for further research on its therapeutic potential. KEY FINDINGS Leaves, fruit, bark and seed of a majority of the species were found to possess abundant ethnomedicinal value, but leaves were found to be used most frequently to treat many ailments such as respiratory disorders, stomach pain, wound, inflammation, myalgia, cough, dysentery and diarrhoea. The phytochemical investigation of 36 species resulted in isolation of 293 chemical constituents from various chemical classes. The crude extracts, fractions, essential oils and pure compounds isolated from various Cordia species were reported to have a varied range of pharmacological activities. SUMMARY Many of the traditional uses of the genus Cordia were supported by the results obtained from pharmacological studies performed using various extracts or pure compounds. More attention should be given to the biological evaluation using pure phytochemicals and to identify the mechanism of actions and exploring this genus for new drug discovery.
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Affiliation(s)
- Manisha J Oza
- Shobhaben Pratapbhai Patel School of Pharmacy and Technology Management, SVKM's NMIMS, Vile Parle (W), Mumbai, India.,SVKM's Dr. Bhanuben Nanavati College of Pharmacy, Vile Parle (W), Mumbai, India
| | - Yogesh A Kulkarni
- Shobhaben Pratapbhai Patel School of Pharmacy and Technology Management, SVKM's NMIMS, Vile Parle (W), Mumbai, India
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Maity N, Nema NK, Sarkar BK, Mukherjee PK. Standardized Clitoria ternatea leaf extract as hyaluronidase, elastase and matrix-metalloproteinase-1 inhibitor. Indian J Pharmacol 2013; 44:584-7. [PMID: 23112418 PMCID: PMC3480789 DOI: 10.4103/0253-7613.100381] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/10/2011] [Revised: 06/20/2012] [Accepted: 07/04/2012] [Indexed: 11/30/2022] Open
Abstract
Aim: Plant Clitoria ternatea L. is claimed to possess a wide range of activities including antiinflammatory, local anesthetic and antidiabetic effect, etc. The aim of the present study was to evaluate the wound healing potential of standardized C. ternatea leaf extract in terms of different enzymatic models, which are mostly associated with skin wound. Materials and Methods: The methanol extract and fractions were screened for its hyaluronidase, elastase, and matrix metalloproteinase-1 (MMP-1) inhibitory activity compared with standard oleanolic acid. The activity was rationalized through reverse phase high performance liquid chromatography (RP-HPLC) standardization of the extract and fractions with respect to its isolated biomarker taraxerol (yield 5.27% w/w). Results: The extract showed significant (P < 0.001) hyaluronidase (IC50 18.08 ± 0.46 μg/ ml) and MMP-1 (P < 0.05) inhibition, but the elastase inhibition was insignificant (IC50 42.68 ± 0.46 μg/ml). Among the fractions, ethyl acetate fraction showed significant (P < 0.001) inhibition of hyaluronidase (IC50 28.01 ± 0.48 μg/ml) and MMP-1 (P < 0.01). The HPLC analysis revealed that the extract and the ethyl acetate fraction are enriched with taraxerol (5.32% w/w and 4.55% w/w, respectively). Conclusions: The experiment validated the traditional uses of C. ternatea and may be recommended for use in the treatment of different types of skin wounds, where taraxerol may be a responsible biomarker.
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Affiliation(s)
- Niladri Maity
- Department of Pharmaceutical Technology, School of Natural Product Studies, Jadavpur University, Kolkata, West Bengal, India
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