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RIYAZ M, SHAH RA, SAVARIMUTHU I, KUPPUSAMY S. Comparative analysis of the mitochondrial genome of Hypospila bolinoides and Lygephila dorsigera (Lepidoptera: Noctuoidea: Erebidae), with implications for their phylogeny. EUROPEAN JOURNAL OF ENTOMOLOGY 2023; 120:187-198. [DOI: 10.14411/eje.2023.024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/30/2023]
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Phylogenomics including the newly sequenced mitogenomes of two moths (Noctuoidea, Erebidae) reveals Ischyja manlia (incertae sedis) as a member of subfamily Erebinae. Genetica 2023; 151:105-118. [PMID: 36708484 DOI: 10.1007/s10709-023-00180-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2022] [Accepted: 01/17/2023] [Indexed: 01/29/2023]
Abstract
We sequenced the mitogenomes of two Erebid species, namely Ischyja manlia (Cramer, 1776) and Rusicada privata (Walker, 1865) to analyse the phylogenetic relationship and to establish the taxonomic position of incertae sedis members of the family Erebidae. The two circular genomes of I. manlia and R. privata were 15,879 bp and 15,563 bp long, respectively. The gene order was identical, containing 13 protein-coding genes (PCGs), 22 tRNA genes, two rRNA genes, and an A + T-rich region. The nucleotide compositions of the A + T-rich region of both mitogenomes were similar: 80.65% for R. privata, and 81.09% for I. manlia. The AT skew and GC skew were slightly positive in I. manlia and negative in R. privata. In I. manlia and R. privata, except for cox1 which started with CGA and TTG codons, all the other 12 PCGs started with ATN codon. The A + T-rich regions of I. manlia and R. privata were 433 and 476 bp long, respectively, and contained common characteristics of Noctuoidea moths. At present, Ischyja is treated as Erebinae incertae sedis. However, phylogenetic analysis conducted in the present study reveals that the genus Ischyja is most likely to be a member of the subfamily Erebinae.
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Unfolding the mitochondrial genome structure of green semilooper (Chrysodeixis acuta Walker): An emerging pest of onion (Allium cepa L.). PLoS One 2022; 17:e0273635. [PMID: 36040876 PMCID: PMC9426943 DOI: 10.1371/journal.pone.0273635] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2022] [Accepted: 08/12/2022] [Indexed: 11/19/2022] Open
Abstract
Onion is the most important crop challenged by a diverse group of insect pests in the agricultural ecosystem. The green semilooper (Chrysodeixis acuta Walker), a widespread tomato and soybean pest, has lately been described as an emergent onion crop pest in India. C. acuta whole mitochondrial genome was sequenced in this work. The circular genome of C. acuta measured 15,743 base pairs (bp) in length. Thirteen protein-coding genes (PCGs), 22 tRNA genes, two rRNA genes, and one control region were found in the 37 sequence elements. With an average 395 bp gene length, the maximum and minimum gene length observed was 1749 bp and 63 bp of nad5 and trnR, respectively. Nine of the thirteen PCGs have (ATN) as a stop codon, while the other four have a single (T) as a stop codon. Except for trnS1, all of the tRNAs were capable of producing a conventional clover leaf structure. Conserved ATAGA motif sequences and poly-T stretch were identified at the start of the control region. Six overlapping areas and 18 intergenic spacer regions were found, with sizes ranged from 1 to 20 bp and 1 to 111 bp correspondingly. Phylogenetically, C. acuta belongs to the Plusiinae subfamily of the Noctuidae superfamily, and is closely linked to Trichoplusia ni species from the same subfamily. In the present study, the emerging onion pest C. acuta has its complete mitochondrial genome sequenced for the first time.
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Xu M, Zhou S, Wan X. Phylogenetic Implication of Large Intergenic Spacers: Insights from a Mitogenomic Comparison of Prosopocoilus Stag Beetles (Coleoptera: Lucanidae). Animals (Basel) 2022; 12:ani12131595. [PMID: 35804495 PMCID: PMC9264858 DOI: 10.3390/ani12131595] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2022] [Revised: 06/12/2022] [Accepted: 06/18/2022] [Indexed: 11/16/2022] Open
Abstract
Simple Summary Insect mitochondrial genomes (mitogenomes) show high diversity in some lineages. In the mitogenome of some Coleoptera species, a large intergenic spacer (IGS) has been identified. However, very little is known about mitogenomes of lucanid beetles. In this work, to provide further insight into the phylogenic relationships among species in lucanid beetles (genus Prosopocoilus), two Prosopocoilus species (Prosopocoilus castaneus and Prosopocoilus laterotarsus) were newly sequenced and comparatively analyzed. Significantly, the two newly sequenced Prosopocoilus species contained a large IGS located between trnI and trnQ. Our phylogenomic analyses showed that P. castaneus and P. laterotarsus were clustered in a clade with typical Prosopocoilus species (Prosopocoilus confucius, Prosopocoilus blanchardi, and Prosopocoilusastacoides). These results provide valuable data for the future study of the phylogenetic relationships in this genus. Abstract To explore the characteristics of mitogenomes and discuss the phylogenetic relationships within the genus Prosopocoilus, the mitogenomes of two species (P. castaneus and P. laterotarsus) were newly sequenced and comparatively analyzed. The arrangement of the mitogenome in these two lucanid beetles was the same as that in the inferred ancestral insect, and the nucleotide composition was highly biased towards A + T as in other lucanids. The evolutionary rates of 13 protein-coding genes (PCGs) suggested that their evolution was based on purifying selection. Notably, we found evidence of the presence of a large IGS between trnI and trnQ genes, whose length varied from 375 bp (in P. castaneus) to 158 bp (in P. laterotarsus). Within the large IGS region, a short sequence (TAAAA) was found to be unique among these two species, providing insights into phylogenomic reconstruction. Phylogenetic analyses were performed using the maximum likelihood (IQ-TREE) and Bayesian (PhyloBayes) methods based on 13 protein-coding genes (PCGs) in nucleotides and amino acids (AA) from published mitogenomes (n = 29). The genus Prosopocoilus was found to constitute a distinct clade with high nodal support. Overall, our findings suggested that analysis of the characteristics of the large IGS (presence or absence, size, and location) in mitogenomes of the genus Prosopocoilus may be informative for the phylogenetic and taxonomic analyses and for evaluation of the genus Prosopocoilus, despite the dense sampling materials needed.
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Affiliation(s)
- Mengqiong Xu
- Department of Ecology, School of Resources and Environmental Engineering, Anhui University, Hefei 230601, China; (M.X.); (S.Z.)
- Anhui Province Key Laboratory of Wetland Ecosystem Protection and Restoration, Hefei 230601, China
| | - Shiju Zhou
- Department of Ecology, School of Resources and Environmental Engineering, Anhui University, Hefei 230601, China; (M.X.); (S.Z.)
- Anhui Province Key Laboratory of Wetland Ecosystem Protection and Restoration, Hefei 230601, China
| | - Xia Wan
- Department of Ecology, School of Resources and Environmental Engineering, Anhui University, Hefei 230601, China; (M.X.); (S.Z.)
- Anhui Province Key Laboratory of Wetland Ecosystem Protection and Restoration, Hefei 230601, China
- Correspondence: ; Tel.: +86-136-3709-1923
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Liu X, Qi M, Xu H, Wu Z, Hu L, Yang M, Li H. Nine Mitochondrial Genomes of the Pyraloidea and Their Phylogenetic Implications (Lepidoptera). INSECTS 2021; 12:insects12111039. [PMID: 34821839 PMCID: PMC8623390 DOI: 10.3390/insects12111039] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/18/2021] [Revised: 11/16/2021] [Accepted: 11/16/2021] [Indexed: 12/03/2022]
Abstract
Simple Summary The Pyraloidea is a large superfamily of Lepidoptera in species composition. To date, the higher-level phylogenetic relationships in this group remain unresolved, and many taxa, with taxonomic positions historically established by morphological characters, need to be confirmed through sequencing of DNA, including mitochondrial genome sequences (mitogenomes). Here, we newly generated nine complete mitogenomes for Pyraloidea that shared identical gene content, and arrangements that are typical of Lepidoptera. The current phylogenetic results confirmed previous multilocus studies, indicating the effectiveness of mitogenomes for inference of Pyraloidea higher-level relationships. Unexpectedly, Orybina Snellen was robustly placed as basal to the remaining Pyralidae taxa, rather than nested in the Pyralinae of Pyralidae as morphologically defined and placed. Our results bring a greater understanding to Pyraloidea phylogeny, and highlight the necessity of sequencing more pyraloid taxa to reevaluate their phylogenetic positions. Abstract The Pyraloidea is one of the species-rich superfamilies of Lepidoptera and contains numerous economically important pest species that cause great loss in crop production. Here, we sequenced and annotated nine complete mitogenomes for Pyraloidea, and further performed various phylogenetic analyses, to improve our understanding of mitogenomic evolution and phylogeny of this superfamily. The nine mitogenomes were circular, double-stranded molecules, with the lengths ranging from 15,214 bp to 15,422 bp, which are comparable to other reported pyraloid mitogenomes in size. Gene content and arrangement were highly conserved and are typical of Lepidoptera. Based on the hitherto most extensive mitogenomic sampling, our various resulting trees showed generally congruent topologies among pyraloid subfamilies, which are almost in accordance with previous multilocus studies, indicating the suitability of mitogenomes in inferring high-level relationships of Pyraloidea. However, nodes linking subfamilies in the “non-PS clade” were not completely resolved in terms of unstable topologies or low supports, and future investigations are needed with increased taxon sampling and molecular data. Unexpectedly, Orybina Snellen, represented in a molecular phylogenetic investigation for the first time, was robustly placed as basal to the remaining Pyralidae taxa across our analyses, rather than nested in Pyralinae of Pyralidae as morphologically defined. This novel finding highlights the need to reevaluate Orybina monophyly and its phylogenetic position by incorporating additional molecular and morphological evidence.
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Affiliation(s)
- Xiaomeng Liu
- College of Life Science and Agronomy, Zhoukou Normal University, Zhoukou 466001, China; (X.L.); (H.X.); (Z.W.); (L.H.)
| | - Mujie Qi
- College of Life Sciences, Nankai University, Tianjin 300071, China;
| | - Haizhen Xu
- College of Life Science and Agronomy, Zhoukou Normal University, Zhoukou 466001, China; (X.L.); (H.X.); (Z.W.); (L.H.)
| | - Zhipeng Wu
- College of Life Science and Agronomy, Zhoukou Normal University, Zhoukou 466001, China; (X.L.); (H.X.); (Z.W.); (L.H.)
| | - Lizong Hu
- College of Life Science and Agronomy, Zhoukou Normal University, Zhoukou 466001, China; (X.L.); (H.X.); (Z.W.); (L.H.)
| | - Mingsheng Yang
- College of Life Science and Agronomy, Zhoukou Normal University, Zhoukou 466001, China; (X.L.); (H.X.); (Z.W.); (L.H.)
- Correspondence: (M.Y.); (H.L.)
| | - Houhun Li
- College of Life Sciences, Nankai University, Tianjin 300071, China;
- Correspondence: (M.Y.); (H.L.)
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Riyaz M, Shah RA, Savarimuthu I, Kuppusamy S. Comparative mitochondrial genome analysis of Eudocima salaminia (Cramer, 1777) (Lepidoptera: Noctuoidea), novel gene rearrangement and phylogenetic relationship within the superfamily Noctuoidea. Mol Biol Rep 2021; 48:4449-4463. [PMID: 34109499 DOI: 10.1007/s11033-021-06465-z] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2020] [Accepted: 06/01/2021] [Indexed: 10/21/2022]
Abstract
The species Eudocima salaminia (Cramer, 1777) commonly known as the fruit-piercing moth belongs to family Erebidae. Its distribution varies from India and across South-east Asia, pacific islands and parts of Australia. The insect is a devastating pest of citrus, longans and lychees. In the present study, complete mitochondrial genome of Eudocima salaminia was sequenced and analyzed using Illumina sequencer. The phylogenetic tree was reconstructed based on nucleotide sequences of 13 PCGs using Maximum likelihood method-General Reversible mitochondrial (mtREV) model. The mitogenome has 15,597 base pairs (bp) in length, comprising of 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, two ribosomal RNA (rRNA) genes and A + T-rich region. All protein-coding genes (PCGs) initiate with canonical start codon ATN. The gene order (trnQ-trnI-trnM) of tRNA shows a different rearrangement compared to ancestral insect gene order (trnI-trnQ-trnM). Almost all tRNAs have a typical cloverleaf secondary structure except for trnS1 (AGN) which lacks the dihydrouridine arm. At the beginning of the control region, we observed a conserved polyT", motif "ATTTA" and microsatellite (TA)n element. There are 21 intergenic regions and five overlapping regions ranging from 1 to 73 bp and 1 to 8 bp, respectively. The phylogenetic relationships based on nucleotide sequences of 13 PCGs using Maximum likelihood method showed the family level relationships as (Notodontidae + (Euteliidae + Noctuidae + (Erebidae + Nolidae))). The present study represents the similarity to phylogenetic analysis of Noctuoidea mitogenome. Moreover, the family Erebidae is the sister to the families of (Euteliidae + Noctuidae + Nolidae).
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Affiliation(s)
- Muzafar Riyaz
- Division of Taxonomy and Biodiversity, Entomology Research Institute, Loyola College, Chennai, Tamil Nadu, 600034, India
| | - Rauf Ahmad Shah
- Division of Taxonomy and Biodiversity, Entomology Research Institute, Loyola College, Chennai, Tamil Nadu, 600034, India
| | | | - Sivasankaran Kuppusamy
- Division of Taxonomy and Biodiversity, Entomology Research Institute, Loyola College, Chennai, Tamil Nadu, 600034, India.
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Organization and phylogenetic relationships of the mitochondrial genomes of Speiredonia retorta and other lepidopteran insects. Sci Rep 2021; 11:2957. [PMID: 33536496 PMCID: PMC7859238 DOI: 10.1038/s41598-021-82561-1] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2020] [Accepted: 01/21/2021] [Indexed: 11/08/2022] Open
Abstract
In this study, we analyzed the complete mitochondrial genome (mitogenome) of Speiredonia retorta, which is a pest and a member of the Lepidoptera order. In total, the S. retorta mitogenome was found to contain 15,652 base pairs encoding 13 protein-coding genes (PCGs), 22 tRNAs, 2 rRNAs, as well as an adenine (A) + thymine (T)-rich region. These findings were consistent with the mitogenome composition of other lepidopterans, as we identified all 13 PCGs beginning at ATN codons. We also found that 11 PCGs terminated with canonical stop codons, whereas cox2 and nad4 exhibited incomplete termination codons. By analyzing the mitogenome of S. retorta using Bayesian inference (BI) and maximum likelihood (ML) models, we were able to further confirm that this species is a member of the Erebidae family.
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Sun Y, Zhu Y, Chen C, Zhu Q, Zhu Q, Zhou Y, Zhou X, Zhu P, Li J, Zhang H. The complete mitochondrial genome of Dysgonia stuposa (Lepidoptera: Erebidae) and phylogenetic relationships within Noctuoidea. PeerJ 2020; 8:e8780. [PMID: 32211241 PMCID: PMC7081777 DOI: 10.7717/peerj.8780] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2019] [Accepted: 02/21/2020] [Indexed: 11/20/2022] Open
Abstract
To determine the Dysgonia stuposa mitochondrial genome (mitogenome) structure and to clarify its phylogenetic position, the entire mitogenome of D. stuposa was sequenced and annotated. The D. stuposa mitogenome is 15,721 bp in size and contains 37 genes (protein-coding genes, transfer RNA genes, ribosomal RNA genes) usually found in lepidopteran mitogenomes. The newly sequenced mitogenome contained some common features reported in other Erebidae species, e.g., an A+T biased nucleotide composition and a non-canonical start codon for cox1 (CGA). Like other insect mitogenomes, the D. stuposa mitogenome had a conserved sequence 'ATACTAA' in an intergenic spacer between trnS2 and nad1, and a motif 'ATAGA' followed by a 20 bp poly-T stretch in the A+T rich region. Phylogenetic analyses supported D. stuposa as part of the Erebidae family and reconfirmed the monophyly of the subfamilies Arctiinae, Catocalinae and Lymantriinae within Erebidae.
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Affiliation(s)
- Yuxuan Sun
- College of Life Sciences, Huaibei Normal University, Huaibei, Anhui, China
| | - Yeshu Zhu
- College of Life Sciences, Huaibei Normal University, Huaibei, Anhui, China
| | - Chen Chen
- College of Life Sciences, Huaibei Normal University, Huaibei, Anhui, China
| | - Qunshan Zhu
- College of Life Sciences, Huaibei Normal University, Huaibei, Anhui, China
| | - Qianqian Zhu
- College of Life Sciences, Huaibei Normal University, Huaibei, Anhui, China
| | - Yanyue Zhou
- College of Life Sciences, Huaibei Normal University, Huaibei, Anhui, China
| | - Xiaojun Zhou
- College of Life Sciences, Huaibei Normal University, Huaibei, Anhui, China
| | - Peijun Zhu
- College of Life Sciences, Huaibei Normal University, Huaibei, Anhui, China
| | - Jun Li
- College of Life Sciences, Huaibei Normal University, Huaibei, Anhui, China
| | - Haijun Zhang
- College of Life Sciences, Huaibei Normal University, Huaibei, Anhui, China
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Yang L, Dai J, Gao Q, Yuan G, Liu J, Sun Y, Sun Y, Wang L, Qian C, Zhu B, Liu C, Wei G. Characterization of the complete mitochondrial genome of Orthaga olivacea Warre (Lepidoptera Pyralidae) and comparison with other Lepidopteran insects. PLoS One 2020; 15:e0227831. [PMID: 32142522 PMCID: PMC7059908 DOI: 10.1371/journal.pone.0227831] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2019] [Accepted: 12/30/2019] [Indexed: 02/01/2023] Open
Abstract
Orthaga olivacea Warre (Lepidoptera: Pyralidae) is an important agricultural pest of camphor trees (Cinnamomum camphora). To further supplement the known genome-level features of related species, the complete mitochondrial genome of Orthaga olivacea is amplified, sequenced, annotated, analyzed, and compared with 58 other species of Lepidopteran. The complete sequence is 15,174 bp, containing 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, 2 ribosomal RNA (rRNA) genes, and a putative control region. Base composition is biased toward adenine and thymine (79.02% A+T) and A+T skew are slightly negative. Twelve of the 13 PCGs use typical ATN start codons. The exception is cytochrome oxidase 1 (cox1) that utilizes a CGA initiation codon. Nine PCGs have standard termination codon (TAA); others have incomplete stop codons, a single T or TA nucleotide. All the tRNA genes have the typical clover-leaf secondary structure, except for trnS(AGN), in which dihydrouridine (DHU) arm fails to form a stable stem-loop structure. The A+T-rich region (293 bp) contains a typical Lepidopter motifs 'ATAGA' followed by a 17 bp poly-T stretch, and a microsatellite-like (AT)13 repeat. Codon usage analysis revealed that Asn, Ile, Leu2, Lys, Tyr and Phe were the most frequently used amino acids, while Cys was the least utilized. Phylogenetic analysis suggested that among sequenced lepidopteran mitochondrial genomes, Orthaga olivacea Warre was most closely related to Hypsopygia regina, and confirmed that Orthaga olivacea Warre belongs to the Pyralidae family.
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Affiliation(s)
- Liangli Yang
- School of Life Sciences, Anhui Agricultural University, Hefei, P. R. China
| | - Junjun Dai
- Sericultural Research Institute, Anhui Academy of Agricultural Sciences, Hefei, P. R. China
| | - Qiuping Gao
- School of Life Sciences, Anhui Agricultural University, Hefei, P. R. China
| | - Guozhen Yuan
- School of Life Sciences, Anhui Agricultural University, Hefei, P. R. China
| | - Jiang Liu
- School of Life Sciences, Anhui Agricultural University, Hefei, P. R. China
| | - Yu Sun
- School of Life Sciences, Anhui Agricultural University, Hefei, P. R. China
| | - Yuxuan Sun
- School of Life Sciences, Anhui Agricultural University, Hefei, P. R. China
| | - Lei Wang
- School of Life Sciences, Anhui Agricultural University, Hefei, P. R. China
| | - Cen Qian
- School of Life Sciences, Anhui Agricultural University, Hefei, P. R. China
| | - Baojian Zhu
- School of Life Sciences, Anhui Agricultural University, Hefei, P. R. China
| | - Chaoliang Liu
- School of Life Sciences, Anhui Agricultural University, Hefei, P. R. China
| | - Guoqing Wei
- School of Life Sciences, Anhui Agricultural University, Hefei, P. R. China
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Zhang R, Li J, Geng S, Yang J, Zhang X, An Y, Li C, Cui H, Li X, Wang Y. The first mitochondrial genome for Phaudidae (Lepidoptera) with phylogenetic analyses of Zygaenoidea. Int J Biol Macromol 2020; 149:951-961. [PMID: 32018010 DOI: 10.1016/j.ijbiomac.2020.01.307] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2019] [Revised: 01/17/2020] [Accepted: 01/31/2020] [Indexed: 10/25/2022]
Abstract
Phauda flammans Walker belongs to Phaudidae (Lepidoptera), which is a holometabolous and leaf-eating pest that harms trees. So far, there is no mitochondrial (mt) genome reported of Phaudidae. Herein, we sequenced and annotated the complete mt genome of P. flammans representing the first mt genome of Phaudidae and predicted the secondary structures of its RNAs in this study. This mt genome is 15470 bp long consisting of 13 protein coding genes (PCGs), 22 tRNAs, 2 rRNAs and the control region, which are usually conserved in insects. Most PCGs used the standard ATN start codons and complete TAA/TAG termination codons. Almost all of tRNA genes exhibited cloverleaf secondary structures except that the dihydorouridine (DHU) arm of tRNASer(AGN) was absent. The phylogenetic analyses using both Bayesian inference (BI) and maximum likelihood (ML) methods all supported that Phaudidae was a single family being the sister group to Zygaenidae. More mt genomes are needed to better understand the phylogenetic relationships within Zygaenoidea in the future.
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Affiliation(s)
- Ruyue Zhang
- College of Plant Protection, Hebei Agricultural University, Baoding 071001, PR China
| | - Jing Li
- College of Plant Protection, Hebei Agricultural University, Baoding 071001, PR China
| | - Shuo Geng
- College of Plant Protection, Hebei Agricultural University, Baoding 071001, PR China
| | - Juan Yang
- National Demonstration Center for Experimental Plant Science Education, College of Agriculture, Guangxi University, Nanning 530004, PR China
| | - Xiao Zhang
- Key Lab of Integrated Crop Pest Management of Shandong Province, College of Plant Health and Medicine, Qingdao Agricultural University, Qingdao 266109, PR China
| | - Yuxin An
- College of Plant Protection, Hebei Agricultural University, Baoding 071001, PR China
| | - Cong Li
- College of Plant Protection, Hebei Agricultural University, Baoding 071001, PR China
| | - Haoran Cui
- College of Plant Protection, Hebei Agricultural University, Baoding 071001, PR China
| | - Xiaoying Li
- College of Plant Protection, Hebei Agricultural University, Baoding 071001, PR China
| | - Yuyu Wang
- College of Plant Protection, Hebei Agricultural University, Baoding 071001, PR China.
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Walsh TK, Perera O, Anderson C, Gordon K, Czepak C, McGaughran A, Zwick A, Hackett D, Tay WT. Mitochondrial DNA genomes of five major Helicoverpa pest species from the Old and New Worlds (Lepidoptera: Noctuidae). Ecol Evol 2019; 9:2933-2944. [PMID: 30891227 PMCID: PMC6405535 DOI: 10.1002/ece3.4971] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2018] [Revised: 10/18/2018] [Accepted: 10/29/2018] [Indexed: 12/16/2022] Open
Abstract
Five species of noctuid moths, Helicoverpa armigera, H. punctigera, H. assulta, H. zea, and H. gelotopoeon, are major agricultural pests inhabiting various and often overlapping global distributions. Visual identification of these species requires a great deal of expertise and misidentification can have repercussions for pest management and agricultural biosecurity. Here, we report on the complete mitochondrial genomes of H. assulta assulta and H. assulta afra, H. gelotopoeon, H. punctigera, H. zea, and H. armigera armigera and H. armigera conferta' assembled from high-throughput sequencing data. This study significantly increases the mitogenome resources for these five agricultural pests with sequences assembled from across different continents, including an H. armigera individual collected from an invasive population in Brazil. We infer the phylogenetic relationships of these five Helicoverpa species based on the 13 mitochondrial DNA protein-coding genes (PCG's) and show that two publicly available mitogenomes of H. assulta (KP015198 and KR149448) have been misidentified or incorrectly assembled. We further consolidate existing PCR-RFLP methods to cover all five Helicoverpa pest species, providing an updated method that will contribute to species differentiation and to future monitoring efforts of Helicoverpa pest species across different continents. We discuss the value of Helicoverpa mitogenomes to assist with species identification in view of the context of the rapid spread of H. armigera in the New World. With this work, we provide the molecular resources necessary for future studies of the evolutionary history and ecology of these species.
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Affiliation(s)
- Tom K. Walsh
- CSIROBlack Mountain LaboratoriesCanberraACTAustralia
| | - Omaththage Perera
- USDA‐ARS Southern Insect Management Research UnitStonevilleMississippi
| | - Craig Anderson
- CSIROBlack Mountain LaboratoriesCanberraACTAustralia
- MRC Human Genetics Unit, MRC Institute of Genetics and Molecular Medicine, Western General HospitalUniversity of EdinburghEdinburghUK
| | - Karl Gordon
- CSIROBlack Mountain LaboratoriesCanberraACTAustralia
| | - Cecilia Czepak
- Escola de AgronomiaUniversidade Federal de GoiásGoiâniaBrazil
| | - Angela McGaughran
- CSIROBlack Mountain LaboratoriesCanberraACTAustralia
- Division of Ecology and Evolution, Research School of BiologyAustralian National UniversityCanberraACTAustralia
| | - Andreas Zwick
- CSIROBlack Mountain LaboratoriesCanberraACTAustralia
| | | | - Wee Tek Tay
- CSIROBlack Mountain LaboratoriesCanberraACTAustralia
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Characterization of the complete mitochondrial genome of Biston marginata (Lepidoptera: Geometridae) and phylogenetic analysis among lepidopteran insects. Int J Biol Macromol 2018; 113:961-970. [PMID: 29462677 DOI: 10.1016/j.ijbiomac.2018.02.110] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2017] [Revised: 02/14/2018] [Accepted: 02/16/2018] [Indexed: 01/05/2023]
Abstract
The complete mitochondrial genome (mitogenome) of Biston marginata (Lepidoptera: Geometridae) was determined and annotated. The circular genome is 15,470bp long and it contains the entire set of 37 genes usually present in lepidopteran mitogenomes. The nucleotide composition of the genome is highly A+T biased, accounting for 81.20%, with a slightly positive AT skewness (0.028), indicating the occurrence of more As than Ts, as found in other Geometridae species. Except for cox1 gene starts with non-canonical initial codon CGA, all protein-coding genes start with ATN codon. Three of the 13 PCGs (protein coding gene) had an incomplete termination codon, T or TA, while the others terminated with TAA. All tRNA genes are predicted to fold into typical clover-leaf secondary structure, except for the trnS1 (AGN), in which the dihydrouridine (DHU) arm could not form a stable stem-loop structure. The A+T-rich region of 343bp is comprised of non-repetitive sequences, but have several distinctive features, including the motif "ATAGA" followed by a 19bp poly-T stretch, a microsatellite-like (TA)7 element next to the ATTTA motif. The phylogenetic analyses support the view that the B. marginata is closely related to the Biston pantrinaria, and confirm that Biston marginata belongs to the family Geometridae.
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Sivasankaran K, Mathew P, Anand S, Ceasar SA, Mariapackiam S, Ignacimuthu S. Complete mitochondrial genome sequence of fruit-piercing moth Eudocima phalonia (Linnaeus, 1763) (Lepidoptera: Noctuoidea). GENOMICS DATA 2017; 14:66-81. [PMID: 29021958 PMCID: PMC5633087 DOI: 10.1016/j.gdata.2017.09.004] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/07/2017] [Revised: 09/18/2017] [Accepted: 09/23/2017] [Indexed: 02/01/2023]
Abstract
The complete mitochondrial genome of the fruit piercing moth Eudocima phalonia (Linnaeus, 1763) (Lepidoptera: Noctuoidea) was sequenced and characterized (Genbank Accession No: KY196412). The complete mitogenome is a circular molecule of 15,575 bp length, consisting of 13 protein-coding genes (PCGs), two ribosomal RNA genes (rrnS and rrnL), 22 transfer RNA (tRNA) genes and an A + T-rich region (D-loop). The nucleotide composition of the genome is highly A + T biased, accounting for 80.67% of nucleotides. All tRNAs have putative secondary structures that are characteristic of mitochondrial tRNA. Most of the PCGs were initiated by typical ATN codons. Five genes were initiated by unusual codons. Cox1 gene was initiated by an unusual CGA codon and terminated by the typical stop codon GAA. Six genes ended with a single T. The A + T-rich region of 336 bp consisted of repetitive sequences, including two ATAGA motifs, a 19 bp poly-T stretch and three microsatellite-like regions ((TA)4, (TA)6 and two (TA)7). Moreover, three large tandem (one 40 bp and two 25 bp) repeated elements were identified in A + T-rich region. Phylogenetic analysis using PCGs revealed that Superfamily Noctuoidea is a monophyletic group.
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Affiliation(s)
- Kuppusamy Sivasankaran
- Entomology Research Institute, Loyola College, University of Madras, Chennai 600 034, Tamil Nadu, India
| | - Pratheesh Mathew
- Entomology Research Institute, Loyola College, University of Madras, Chennai 600 034, Tamil Nadu, India
| | - Sekar Anand
- Entomology Research Institute, Loyola College, University of Madras, Chennai 600 034, Tamil Nadu, India
| | - Stanislaus Antony Ceasar
- Entomology Research Institute, Loyola College, University of Madras, Chennai 600 034, Tamil Nadu, India
- Centre for Plant Sciences, School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, LS29JT, United Kingdom
| | | | - Savarimuthu Ignacimuthu
- Entomology Research Institute, Loyola College, University of Madras, Chennai 600 034, Tamil Nadu, India
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The complete mitochondrial genome of Euproctis similis (Lepidoptera: Noctuoidea: Erebidae) and phylogenetic analysis. Int J Biol Macromol 2017; 105:219-227. [PMID: 28698080 DOI: 10.1016/j.ijbiomac.2017.07.033] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2017] [Revised: 07/05/2017] [Accepted: 07/05/2017] [Indexed: 11/22/2022]
Abstract
The mitochondrial genome (mitogenome) can provide information for phylogenetic analyses and evolutionary biology. We sequenced, annotated, and characterized the mitogenome of Euproctis similis. The complete mitogenome is 15,437bp in length, containing 13 protein-coding genes (PCGs), 22 transfer RNA genes, two ribosomal RNA genes, and a control region (A+T-rich region). The A+T content in the mitogenome was 80.16%. All PCGs use standard ATN as a start codon, with the exception of cytochrome c coxidase 1 (cox1) with CGA. A gene rearrangement (trnM) was found. All transfer RNA (tRNA) genes have a typical clover-leaf structure except for trnS1 (AGN). Phylogenetic analysis was performed using Bayesian Inference and Maximum Likelihood based on the amino acid and nucleotide sequences of 13 mitochondrial PCGs. The well-supported phylogenetic relationships can be generally described as: Notodontidae+(Erebidae+(Nolidae+(Euteliidae+Noctuidae))). The tree support that E. similis shares a close ancestry with Erebidae insects. Our results indicate that Erebidae is a sister group to the other families (Euteliidae, Nolidae, and Noctuidae).
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Sun YX, Wang L, Wei GQ, Qian C, Dai LS, Sun Y, Abbas MN, Zhu BJ, Liu CL. Characterization of the Complete Mitochondrial Genome of Leucoma salicis (Lepidoptera: Lymantriidae) and Comparison with Other Lepidopteran Insects. Sci Rep 2016; 6:39153. [PMID: 27974854 PMCID: PMC5156926 DOI: 10.1038/srep39153] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2016] [Accepted: 11/18/2016] [Indexed: 11/19/2022] Open
Abstract
The complete mitochondrial genome (mitogenome) of Leucoma salicis (Lepidoptera: Lymantriidae) was sequenced and annotated. It is a circular molecule of 15,334 bp, containing the 37 genes usually present in insect mitogenomes. All protein-coding genes (PCGs) are initiated by ATN codons, other than cox1, which is initiated by CGA. Three of the 13 PCGs had an incomplete termination codon, T or TA, while the others terminated with TAA. The relative synonymous codon usage of the 13 protein-coding genes (PCGs) was consistent with those of published lepidopteran sequences. All tRNA genes had typical clover-leaf secondary structures, except for the tRNASer (AGN), in which the dihydrouridine (DHU) arm could not form a stable stem-loop structure. The A + T-rich region of 325 bp had several distinctive features, including the motif 'ATAGA' followed by an 18 bp poly-T stretch, a microsatellite-like (AT)7 element, and an 11-bp poly-A present immediately upstream of tRNAMet. Relationships among 32 insect species were determined using Maximum Likelihood (ML), Neighbor Joining (NJ) and Bayesian Inference (BI) phylogenetic methods. These analyses confirm that L. salicis belongs to the Lymantriidae; and that Lymantriidae is a member of Noctuoidea, and is a sister taxon to Erebidae, Nolidae and Noctuidae, most closely related to Erebidae.
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MESH Headings
- Animals
- Base Sequence
- Bayes Theorem
- Codon, Terminator
- DNA, Mitochondrial/chemistry
- DNA, Mitochondrial/isolation & purification
- DNA, Mitochondrial/metabolism
- Genome, Mitochondrial
- Lepidoptera/classification
- Lepidoptera/genetics
- Likelihood Functions
- Moths/classification
- Moths/genetics
- Nucleic Acid Conformation
- Open Reading Frames/genetics
- Phylogeny
- RNA, Ribosomal/classification
- RNA, Ribosomal/genetics
- RNA, Transfer/chemistry
- RNA, Transfer/classification
- RNA, Transfer/genetics
- Sequence Analysis, DNA
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Affiliation(s)
- Yu-Xuan Sun
- College of Life Sciences, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, Anhui Province, P. R. China
| | - Lei Wang
- College of Life Sciences, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, Anhui Province, P. R. China
| | - Guo-Qing Wei
- College of Life Sciences, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, Anhui Province, P. R. China
| | - Cen Qian
- College of Life Sciences, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, Anhui Province, P. R. China
| | - Li-Shang Dai
- College of Life Sciences, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, Anhui Province, P. R. China
| | - Yu Sun
- College of Life Sciences, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, Anhui Province, P. R. China
| | - Muhammad Nadeem Abbas
- College of Life Sciences, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, Anhui Province, P. R. China
| | - Bao-Jian Zhu
- College of Life Sciences, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, Anhui Province, P. R. China
| | - Chao-Liang Liu
- College of Life Sciences, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, Anhui Province, P. R. China
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Dai LS, Li S, Yu HM, Wei GQ, Wang L, Qian C, Zhang CF, Li J, Sun Y, Zhao Y, Zhu BJ, Liu CL. Mitochondrial genome of the sweet potato hornworm, Agrius convolvuli (Lepidoptera: Sphingidae), and comparison with other Lepidoptera species. Genome 2016; 60:128-138. [PMID: 28084809 DOI: 10.1139/gen-2016-0058] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
In the present study, we sequenced the complete mitochondrial genome (mitogenome) of Agrius convolvuli (Lepidoptera: Sphingidae) and compared it with previously sequenced mitogenomes of lepidopteran species. The mitogenome was a circular molecule, 15 349 base pairs (bp) long, containing 37 genes. The order and orientation of genes in the A. convolvuli mitogenome were similar to those in sequenced mitogenomes of other lepidopterans. All 13 protein-coding genes (PCGs) were initiated by ATN codons, except for the cytochrome c oxidase subunit 1 (cox1) gene, which seemed to be initiated by the codon CGA, as observed in other lepidopterans. Three of the 13 PCGs had the incomplete termination codon T, while the remainder terminated with TAA. Additionally, the codon distributions of the 13 PCGs revealed that Asn, Ile, Leu2, Lys, Phe, and Tyr were the most frequently used codon families. All transfer RNAs were folded into the expected cloverleaf structure except for tRNASer(AGN), which lacked a stable dihydrouridine arm. The length of the adenine (A) + thymine (T)-rich region was 331 bp. This region included the motif ATAGA followed by a 19-bp poly-T stretch and a microsatellite-like (TA)8 element next to the motif ATTTA. Phylogenetic analyses (maximum likelihood and Bayesian methods) showed that A. convolvuli belongs to the family Sphingidae.
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Affiliation(s)
- Li-Shang Dai
- College of Life Sciences, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, P.R. China.,College of Life Sciences, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, P.R. China
| | - Sheng Li
- College of Life Sciences, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, P.R. China.,College of Life Sciences, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, P.R. China
| | - Hui-Min Yu
- College of Life Sciences, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, P.R. China.,College of Life Sciences, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, P.R. China
| | - Guo-Qing Wei
- College of Life Sciences, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, P.R. China.,College of Life Sciences, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, P.R. China
| | - Lei Wang
- College of Life Sciences, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, P.R. China.,College of Life Sciences, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, P.R. China
| | - Cen Qian
- College of Life Sciences, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, P.R. China.,College of Life Sciences, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, P.R. China
| | - Cong-Fen Zhang
- College of Life Sciences, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, P.R. China.,College of Life Sciences, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, P.R. China
| | - Jun Li
- College of Life Sciences, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, P.R. China.,College of Life Sciences, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, P.R. China
| | - Yu Sun
- College of Life Sciences, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, P.R. China.,College of Life Sciences, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, P.R. China
| | - Yue Zhao
- College of Life Sciences, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, P.R. China.,College of Life Sciences, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, P.R. China
| | - Bao-Jian Zhu
- College of Life Sciences, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, P.R. China.,College of Life Sciences, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, P.R. China
| | - Chao-Liang Liu
- College of Life Sciences, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, P.R. China.,College of Life Sciences, Anhui Agricultural University, 130 Changjiang West Road, Hefei 230036, P.R. China
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Liu QN, Chai XY, Bian DD, Ge BM, Zhou CL, Tang BP. The complete mitochondrial genome of fall armyworm Spodoptera frugiperda (Lepidoptera:Noctuidae). Genes Genomics 2015. [DOI: 10.1007/s13258-015-0346-6] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Characterization of the Complete Mitochondrial Genome of Cerura menciana and Comparison with Other Lepidopteran Insects. PLoS One 2015; 10:e0132951. [PMID: 26309239 PMCID: PMC4550444 DOI: 10.1371/journal.pone.0132951] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2015] [Accepted: 06/20/2015] [Indexed: 11/19/2022] Open
Abstract
The complete mitochondrial genome (mitogenome) of Cerura menciana (Lepidoptera: Notodontidae) was sequenced and analyzed in this study. The mitogenome is a circular molecule of 15,369 bp, containing 13 protein-coding genes (PCGs), two ribosomal RNA (rRNA) genes, 22 transfer RNA (tRNA) genes and a A+T-rich region. The positive AT skew (0.031) indicated that more As than Ts were present. All PCGs were initiated by ATN codons, except for the cytochrome c oxidase subunit 1 (cox1) gene, which was initiated by CAG. Two of the 13 PCGs contained the incomplete termination codon T or TA, while the others were terminated with the stop codon TAA. The A+T-rich region was 372 bp in length and consisted of an ‘ATAGA’ motif followed by an 18 bp poly-T stretch, a microsatellite-like (AT)8 and a poly-A element upstream of the trnM gene. Results examining codon usage indicated that Asn, Ile, Leu2, Lys, Tyr and Phe were the six most frequently occurring amino acids, while Cys was the rarest. Phylogenetic relationships, analyzed based on the nucleotide sequences of the 13 PCGs from other insect mitogenomes, confirmed that C. menciana belongs to the Notodontidae family.
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Dai LS, Zhu BJ, Qian C, Zhang CF, Li J, Wang L, Wei GQ, Liu CL. The complete mitochondrial genome of the diamondback moth, Plutella xylostella (Lepidoptera: Plutellidae). Mitochondrial DNA A DNA Mapp Seq Anal 2014; 27:1512-3. [PMID: 25187437 DOI: 10.3109/19401736.2014.953116] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
The complete mitochondrial genome (mitogenome) of Plutella xylostella (Lepidoptera: Plutellidae) was determined (GenBank accession No. KM023645). The length of this mitogenome is 16,014 bp with 13 protein-coding genes (PCGs), 2 rRNA genes, 22 tRNA genes and an A + T-rich region. It presents the typical gene organization and order for completely sequenced lepidopteran mitogenomes. The nucleotide composition of the genome is highly A + T biased, accounting for 81.48%, with a slightly positive AT skewness (0.005). All PCGs are initiated by typical ATN codons, except for the gene cox1, which uses CGA as its start codon. Some PCGs harbor TA (nad5) or incomplete termination codon T (cox1, cox2, nad2 and nad4), while others use TAA as their termination codons. The A + T-rich region is located between rrnS and trnM with a length of 888 bp.
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Affiliation(s)
- Li-Shang Dai
- a College of Life Science, Anhui Agricultural University , Hefei , China
| | - Bao-Jian Zhu
- a College of Life Science, Anhui Agricultural University , Hefei , China
| | - Cen Qian
- a College of Life Science, Anhui Agricultural University , Hefei , China
| | - Cong-Fen Zhang
- a College of Life Science, Anhui Agricultural University , Hefei , China
| | - Jun Li
- a College of Life Science, Anhui Agricultural University , Hefei , China
| | - Lei Wang
- a College of Life Science, Anhui Agricultural University , Hefei , China
| | - Guo-Qing Wei
- a College of Life Science, Anhui Agricultural University , Hefei , China
| | - Chao-Liang Liu
- a College of Life Science, Anhui Agricultural University , Hefei , China
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Liu QN, Bian DD, Jiang SH, Li ZX, Ge BM, Xuan FJ, Yang L, Li CF, Zhang DZ, Zhou CL, Tang BP. The complete mitochondrial genome of the red flour beetle, Tribolium castaneum (Coleoptera: Tenebrionidae). Mitochondrial DNA A DNA Mapp Seq Anal 2014; 27:1525-7. [PMID: 25162515 DOI: 10.3109/19401736.2014.953122] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
The complete mitochondrial genome (mitogenome) of Tribolium castaneum (Coleoptera: Tenebrionidae) was determined to be 15,883 bp (GenBank accession No. KM009121), which contains 22 tRNA genes, 13 protein-coding genes (PCGs), 2 rRNA genes and a major non-coding A + T-rich region. It has the typical gene organization and order of mitogenomes from ancestral insects. The nucleotide composition was also biased toward A + T nucleotides (71.72%) and the AT skew of this mitogenome was slightly positive. All of the 22 tRNA genes displayed a typical clover-leaf structure, with the exception of trnS1 (AGN). Thirteen PCGs were initiated by ATN codons, except for cytochrome c oxidase subunit 1 (cox1) gene which was initiated by AAT. Eight of the 13 PCGs harbor the incomplete termination codon by T or TA. The A + T-rich region of the mitogenome was 1237 bp in length and the A + T content was 82.30%.
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Affiliation(s)
- Qiu-Ning Liu
- a Jiangsu Provincial Key Laboratory of Coastal Wetland Bioresources , Jiangsu Synthetic Innovation Center for Coastal Bio-agriculture, Yancheng Teachers University , Yancheng , P.R. China
| | - Dan-Dan Bian
- a Jiangsu Provincial Key Laboratory of Coastal Wetland Bioresources , Jiangsu Synthetic Innovation Center for Coastal Bio-agriculture, Yancheng Teachers University , Yancheng , P.R. China
| | - Sen-Hao Jiang
- a Jiangsu Provincial Key Laboratory of Coastal Wetland Bioresources , Jiangsu Synthetic Innovation Center for Coastal Bio-agriculture, Yancheng Teachers University , Yancheng , P.R. China
| | - Zhen-Xing Li
- a Jiangsu Provincial Key Laboratory of Coastal Wetland Bioresources , Jiangsu Synthetic Innovation Center for Coastal Bio-agriculture, Yancheng Teachers University , Yancheng , P.R. China
| | - Bao-Ming Ge
- a Jiangsu Provincial Key Laboratory of Coastal Wetland Bioresources , Jiangsu Synthetic Innovation Center for Coastal Bio-agriculture, Yancheng Teachers University , Yancheng , P.R. China
| | - Fu-Jun Xuan
- a Jiangsu Provincial Key Laboratory of Coastal Wetland Bioresources , Jiangsu Synthetic Innovation Center for Coastal Bio-agriculture, Yancheng Teachers University , Yancheng , P.R. China
| | - Li Yang
- a Jiangsu Provincial Key Laboratory of Coastal Wetland Bioresources , Jiangsu Synthetic Innovation Center for Coastal Bio-agriculture, Yancheng Teachers University , Yancheng , P.R. China
| | - Chao-Feng Li
- a Jiangsu Provincial Key Laboratory of Coastal Wetland Bioresources , Jiangsu Synthetic Innovation Center for Coastal Bio-agriculture, Yancheng Teachers University , Yancheng , P.R. China
| | - Dai-Zhen Zhang
- a Jiangsu Provincial Key Laboratory of Coastal Wetland Bioresources , Jiangsu Synthetic Innovation Center for Coastal Bio-agriculture, Yancheng Teachers University , Yancheng , P.R. China
| | - Chun-Lin Zhou
- a Jiangsu Provincial Key Laboratory of Coastal Wetland Bioresources , Jiangsu Synthetic Innovation Center for Coastal Bio-agriculture, Yancheng Teachers University , Yancheng , P.R. China
| | - Bo-Ping Tang
- a Jiangsu Provincial Key Laboratory of Coastal Wetland Bioresources , Jiangsu Synthetic Innovation Center for Coastal Bio-agriculture, Yancheng Teachers University , Yancheng , P.R. China
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