1
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Jeong JS, Kim HK, Park JS, Hwang HS, Kim I. Complete mitochondrial genome of the European common barnacle Perforatus perforatus Bruguière, 1789 (balanomorpha: balanidae). Mitochondrial DNA B Resour 2024; 9:823-827. [PMID: 38911522 PMCID: PMC11191835 DOI: 10.1080/23802359.2024.2368727] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2024] [Accepted: 06/11/2024] [Indexed: 06/25/2024] Open
Abstract
This study is the first to sequence the complete mitochondrial genome (mitogenome) of Perforatus perforatus Bruguière, 1789 (Balanomorpha: Balanidae). The 15,536-bp long P. perforatus mitogenome contained a typical set of animal mitochondrial genes, along with one control region. The P. perforatus mitogenome had an inverted gene block (trnP-ND4L-ND4-trnH-ND5-trnF) between trnS(gct) and trnT. This inverted gene block had been detected six species in three subfamilies of the Balanidae family (Balaninae, Acastinae and Megabalaninae), but our results show that it is also present in Concavinae, in which P. perforatus is included. The phylogenetic tree based on the concatenated sequences of the 13 protein-coding genes and two rRNA genes showed that P. perforatus is closely associated with Acasta sulcate and Balanus trigonus within Balanidae.
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Affiliation(s)
- Jun Seong Jeong
- Division of Genetic Resources, Honam National Institute of Biological Resources, Mokpo, Republic of Korea
| | - Hyun Kyong Kim
- Division of Zoology, Honam National Institute of Biological Resources, Mokpo, Republic of Korea
| | - Jeong Sun Park
- Department of Applied Biology, College of Agriculture and Life Sciences, Chonnam National University, Gwangju, Republic of Korea
| | - Hee-Seung Hwang
- Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA, USA
| | - Iksoo Kim
- Department of Applied Biology, College of Agriculture and Life Sciences, Chonnam National University, Gwangju, Republic of Korea
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2
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Xu M, Li J, Guo B, Xu K, Ye Y, Yan X. Insights into the Deep Phylogeny and Novel Gene Rearrangement of Mytiloidea from Complete Mitochondrial Genome. Biochem Genet 2023; 61:1704-1726. [PMID: 36745306 DOI: 10.1007/s10528-023-10338-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2022] [Accepted: 01/17/2023] [Indexed: 02/07/2023]
Abstract
The extant marine mussels which belong to the Mytiloidea are widespread species inhabiting mostly coastal waters, with some distributed in the deep sea. To clarify the classification systems and phylogenetic relationships range from genus to family level within Mytiloidea, new sequence was used in a phylogenetic analysis including all the available Mytiloidea mitochondrial genomes. In this study, the complete mitochondrial genome of Vignadula atrata is 15,624 bp in length and contains 12 protein-coding genes (PCGs, atp8 is absent), two ribosomal RNA genes, and 22 transfer RNA genes. Phylogenetic analysis based on 12 PCGs showed that it has a close relationship to Bathymodiolus. The analysis of gene rearrangements in the Pteriomorphia showed that the arrangements are highly variable across species, novel gene rearrangements were found within Mytiloidea. The V. atrata mitogenome was provided in detail, with notes on the sequence and a key to the species of Vignadula. This study provides a perspective on the taxonomic histories of the marine mussels and refines the unclear relationship between the origin and evolution of species in Mytiloidea within Bivalvia.
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Affiliation(s)
- Minhui Xu
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, 316022, China
| | - Jiji Li
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, 316022, China
| | - Baoying Guo
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, 316022, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, 316022, China
| | - Kaida Xu
- Key Laboratory of Sustainable Utilization of Technology Research for Fishery Resource of Zhejiang Province, Marine Fishery Institute of Zhejiang Province, Zhejiang Ocean University, Zhoushan, China
| | - Yingying Ye
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, 316022, China.
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, 316022, China.
| | - Xiaojun Yan
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, 316022, China.
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, 316022, China.
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3
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The Mitochondrial Genome of the Globally Invasive Barnacle Megabalanus coccopoma Darwin 1854 (Crustacea: Balanomorpha): Rearrangement and Phylogenetic Consideration within Balanomorpha. DIVERSITY 2023. [DOI: 10.3390/d15010117] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
Megabalanus coccopoma (Darwin, 1854) is a globally invasive species in Balanomorpha (Crustacea). This species is a model organism for studying marine pollution and ecology. However, its mitogenome remains unknown. The mitogenome sequencing of M. coccopoma is completed in the present study. It has a 15,098 bp in length, including 13 protein-coding genes (PCGs), 2 ribosomal RNAs (rRNAs), 22 transfer RNAs (tRNAs), along with a putative regulatory area. A substantial A+T bias was observed in the genome composition (68.2%), along with a negative AT (0.82) and GC (−0.136) skew. Compared to the gene sequence of the ground model of pan-crustacea, 13 gene clusters (or genes), such as 10 tRNAs and 3 PCGs, were observed in a different order. This was in line with the previously observed large-scale gene rearrangements of Balanomorpha. Among the 37 genes, the gene cluster (M-nad2-W-cox1-L2-cox2-D-atp8-atp6-cox3-G- nad3-R-N-A-E-S1) Balanomorpha was conserved. Furthermore, phylogeny analysis indicated that the existing Balanomorpha species family was divided into nine rearrangement patterns, supporting the polyphyly of Balanoidea.
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Liu S, Mao S, Ge T, Cai Y, Ji N, Kong X, Shen X. The first mitochondrial genome of Balanus trigonus Darwin, 1854 (Sessilia: Balanidae) and molecular phylogeny within Cirripedia. MITOCHONDRIAL DNA PART B-RESOURCES 2021; 6:1740-1742. [PMID: 34104756 PMCID: PMC8158200 DOI: 10.1080/23802359.2021.1930216] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Abstract
The triangle barnacle Balanus trigonus Darwin, 1854, a cosmopolitan inhabitant of tropical and warm temperate seas, is a member of robust system for the study of evolutionary processes in the intertidal zone. The first mitochondrial genome of B. trigonus is presented. The complete mitochondrial genome of B. trigonus is a circular molecule of 15,560 bp, which encodes 13 protein-coding genes (PCGs), 2 rRNA genes, and 22 tRNA genes. In comparison within Sessilia, the arrangement of the mitochondrial genome of B. trigonus is more similar to Megabalanus spp. than the congener Balanus balanus, which share a same inversion of a large gene block (P-nd4L-nd4-H-nd5-F). Phylogenetic analysis based on mitochondrial PCGs reveals that B. trigonus clusters with Acasta Sulcata (BP = 100), then grouped with Megabalanus volcano and Megabalanus ajax with high support (BP = 90). In further, more data and research are needed to reveal the phylogeny within Cirripedia.
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Affiliation(s)
- Shishi Liu
- Jiangsu Institute of Marine Resources, Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang, China
| | - Sheng Mao
- Jiangsu Institute of Marine Resources, Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang, China
| | - Tian Ge
- Jiangsu Institute of Marine Resources, Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang, China
| | - Yuefeng Cai
- Jiangsu Institute of Marine Resources, Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang, China.,Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Jiangsu Ocean University, Lianyungang, China
| | - Nanjing Ji
- Jiangsu Institute of Marine Resources, Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang, China.,Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Jiangsu Ocean University, Lianyungang, China
| | - Xue Kong
- Jiangsu Institute of Marine Resources, Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang, China.,Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Jiangsu Ocean University, Lianyungang, China
| | - Xin Shen
- Jiangsu Institute of Marine Resources, Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang, China.,Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Jiangsu Ocean University, Lianyungang, China
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5
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Feng M, Cao W, Wang C, Lin S, Sun D, Zhou Y. Complete mitochondrial genome of Tetraclita squamosa squamosa (Sessilia: Tetraclitidae) from China and phylogeny within Cirripedia. MITOCHONDRIAL DNA PART B-RESOURCES 2020; 5:2121-2123. [PMID: 33366942 PMCID: PMC7510661 DOI: 10.1080/23802359.2020.1765705] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/21/2020] [Accepted: 04/25/2020] [Indexed: 11/11/2022]
Abstract
Here we present the complete mitochondrial genome of Tetraclita squamosasquamosa, which is 15,191 bp in length with 67.20% AT content. It contains 13 protein-coding genes, 2 ribosomal-RNA genes and 22 transfer-RNA genes. All PCGs except nad4l in T. squamosasquamosa start with ATN, and terminated with a complete stop codon, except nad3. Phylogenetic analysis based on mitochondrial PCGs shows that T. squamosasquamosa is clustered with T. serrata into a branch (BP = 100). Our result is consistent with previous reports that genus Tetraclita and family Tetraclitidae are not monophyletic. This study contributes to further phylogenetic analysis within Cirripedia.
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Affiliation(s)
- Meiping Feng
- Key Laboratory of Marine Ecosystem Dynamics, Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, China.,Engineering Technology Research Center of Marine Ranching, Shanghai Ocean University, Shanghai, China.,College of Marine Ecology and Environment, Shanghai Ocean University, Shanghai, China
| | - Wenhao Cao
- CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China
| | - Chunsheng Wang
- Key Laboratory of Marine Ecosystem Dynamics, Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, China.,School of Oceanography, Shanghai Jiao Tong University, Shanghai, P. R. China
| | - Shiquan Lin
- Key Laboratory of Marine Ecosystem Dynamics, Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, China
| | - Dong Sun
- Key Laboratory of Marine Ecosystem Dynamics, Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, China
| | - Yadong Zhou
- Key Laboratory of Marine Ecosystem Dynamics, Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, China
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6
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Mao S, Ge T, Chen P, Cai Y, Ji N, Shen X. The complete mitochondrial genome of Tetraclita japonica (Crustacea: Maxillopoda: Sessilia) from Zhejiang (China) and phylogeny within Sessilia. MITOCHONDRIAL DNA PART B-RESOURCES 2020; 5:2913-2915. [PMID: 33458000 PMCID: PMC7782338 DOI: 10.1080/23802359.2020.1791756] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
The complete mitochondrial genome of Tetraclita japonica (Crustacea: Maxillopoda: Sessilia) from Zhejiang (China) was presented (T. japonica ZJ). The genome is a circular molecule of 15,192 bp, all non-coding regions are 694 bp in length, and the longest one (307 bp) is located between 12S rRNA and trnK. Phylogenetic analysis based on mitochondrial PCGs shows that T. japonica ZJ clusters with T. japonica CN, and they grouped with T. japonica (BP = 100), then grouped with Tesseropora rosea, Tetraclita serrata, Tetraclita rufotincta, Epopella plicata, and Tetraclitella divisa successively . The phylogenetic tree indicated that the Balanidae and Archaeobalanidae are polyphyletic, while the Chthamalidae is monophyletic. The result can help us to understand the phylogenetic history within Sessilia.
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Affiliation(s)
- Sheng Mao
- Jiangsu Institute of Marine Resources/Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang, China.,Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Jiangsu Ocean University, Lianyungang, China
| | - Tian Ge
- Jiangsu Institute of Marine Resources/Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang, China
| | - Panpan Chen
- Jiangsu Institute of Marine Resources/Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang, China
| | - Yuefeng Cai
- Jiangsu Institute of Marine Resources/Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang, China
| | - Nanjing Ji
- Jiangsu Institute of Marine Resources/Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang, China
| | - Xin Shen
- Jiangsu Institute of Marine Resources/Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang, China.,Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Jiangsu Ocean University, Lianyungang, China
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7
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Tian M, Chen P, Song J, He F, Shen X. The first mitochondrial genome of Capitulum mitella (Crustacea: Cirripedia) from China: revealed the phylogenetic relationship within Thoracica. MITOCHONDRIAL DNA PART B-RESOURCES 2020; 5:2573-2575. [PMID: 33457867 PMCID: PMC7783061 DOI: 10.1080/23802359.2020.1781564] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/02/2022]
Abstract
Capitulum mitella (Crustacea: Cirripedia) is an important stalked barnacle. The first mitochondrial genome of C. mitella from China was presented, which is a circular molecule of 15,930 bp in length and AT content is 64.4%. It encodes 37 genes, including 13 PCGs, 22 tRNAs, and two rRNAs, which is consistent with most barnacles species reported. There are 15 genes encoded on the light strand and 22 genes encoded on the heavy strand. Identical to most barnacles species reported, srRNA and lrRNA genes are adjacent and separated only by trnV gene. Phylogenetic trees showed that C. mitella clustered with Pollicipes polymerus, indicating Pollicipedidae is monophyletic. However, Scalpelliformes was not monophyletic from the phylogenetic tree. From the level of order, the Lepadiformes was located at the base of the phylogenetic tree, indicating that its divergence time was earlier than Scalpelliformes. The results provided more insights into phylogenetic consideration at the genomic level within superorder Thoracica.
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Affiliation(s)
- Mei Tian
- Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Institute of Marine Resources, Jiangsu Ocean University, Lianyungang, China.,Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Jiangsu Ocean University, Lianyungang, China
| | - Panpan Chen
- Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Institute of Marine Resources, Jiangsu Ocean University, Lianyungang, China.,Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Jiangsu Ocean University, Lianyungang, China
| | - Jun Song
- Guangdong Provincial Key Laboratory of Marine Biotechnology, Shantou University, Shantou, China
| | - Fuxiang He
- Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Institute of Marine Resources, Jiangsu Ocean University, Lianyungang, China
| | - Xin Shen
- Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Institute of Marine Resources, Jiangsu Ocean University, Lianyungang, China.,Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Jiangsu Ocean University, Lianyungang, China
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8
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Feng M, Lin S, Wang C, Sun D, Zhou Y, Bi Y, Xu K. The first mitochondrial genome of Megabalanus tintinnabulum (Sessilia: Balanidae) from China: phylogeny within Cirripedia based on mitochondrial genes. Mitochondrial DNA B Resour 2019; 4:4016-4018. [PMID: 33366296 PMCID: PMC7707791 DOI: 10.1080/23802359.2019.1688104] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2019] [Accepted: 10/27/2019] [Indexed: 11/02/2022] Open
Abstract
Here we present the complete mitochondrial genome of Megabalanus tintinnabulum. The genome is 15,107 bp in length with a 67.35% AT content. It contains 13 protein-coding genes (PCGs), 2 rRNAs genes, and 22 tRNAs. Both rRNAs are encoded on the light strand, as in the other crustacean and barnacle mitochondrial genomes. Besides five tRNAs are encoded on the light strand (nad1, trnV, trnL1, trnC, trnQ, and trnK). Only one PCG is encoded on the light strand (nad1), whereas the other 12 PCGs are located on the heavy strand, which is consistent with M. ajax. Phylogenetic analysis based on mitochondrial PCGs shows that M. tintinnabulum is clustered with M. ajax into a branch (BP = 100), and the group with M. volcano with high support. This study contributes to further phylogenetic analysis within Cirripedia.
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Affiliation(s)
- Meiping Feng
- Key Laboratory of Marine Ecosystem and Biogeochemistry, State Oceanic Administration & Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, PR China
- College of Marine Ecology and Environment, Shanghai Ocean University, Shanghai, PR China
- Marine and Fisheries Research Institute, Zhejiang Ocean University, Zhoushan, PR China
| | - Shiquan Lin
- Key Laboratory of Marine Ecosystem and Biogeochemistry, State Oceanic Administration & Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, PR China
| | - Chunsheng Wang
- Key Laboratory of Marine Ecosystem and Biogeochemistry, State Oceanic Administration & Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, PR China
- School of Oceanography, Shanghai Jiao Tong University, Shanghai, PR China
| | - Dong Sun
- Key Laboratory of Marine Ecosystem and Biogeochemistry, State Oceanic Administration & Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, PR China
| | - Yadong Zhou
- Key Laboratory of Marine Ecosystem and Biogeochemistry, State Oceanic Administration & Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, PR China
| | - Yuanxin Bi
- Marine and Fisheries Research Institute, Zhejiang Ocean University, Zhoushan, PR China
| | - Kaida Xu
- Marine and Fisheries Research Institute, Zhejiang Ocean University, Zhoushan, PR China
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Ge T, Song J, Ji N, Cai Y, Chen P, Zhao H, Shen X. The first mitochondrial genome of Tetraclita japonica (Crustacea: Sessilia) from China: phylogeny within Cirripedia based on mitochondrial genes. Mitochondrial DNA B Resour 2019. [DOI: 10.1080/23802359.2019.1617057] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022] Open
Affiliation(s)
- Tian Ge
- Jiangsu Key Laboratory of Marine Bioresources and Environment/Jiangsu Key Laboratory of Marine Biotechnology, Huaihai Institute of Technology, Lianyungang, China
- Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Huaihai Institute of Technology, Lianyungang, China
| | - Jun Song
- Jiangsu Key Laboratory of Marine Bioresources and Environment/Jiangsu Key Laboratory of Marine Biotechnology, Huaihai Institute of Technology, Lianyungang, China
- Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Huaihai Institute of Technology, Lianyungang, China
| | - Nanjing Ji
- Jiangsu Key Laboratory of Marine Bioresources and Environment/Jiangsu Key Laboratory of Marine Biotechnology, Huaihai Institute of Technology, Lianyungang, China
- Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Huaihai Institute of Technology, Lianyungang, China
| | - Yuefeng Cai
- Jiangsu Key Laboratory of Marine Bioresources and Environment/Jiangsu Key Laboratory of Marine Biotechnology, Huaihai Institute of Technology, Lianyungang, China
- Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Huaihai Institute of Technology, Lianyungang, China
| | - Panpan Chen
- Jiangsu Key Laboratory of Marine Bioresources and Environment/Jiangsu Key Laboratory of Marine Biotechnology, Huaihai Institute of Technology, Lianyungang, China
| | - Han Zhao
- Jiangsu Key Laboratory of Marine Bioresources and Environment/Jiangsu Key Laboratory of Marine Biotechnology, Huaihai Institute of Technology, Lianyungang, China
| | - Xin Shen
- Jiangsu Key Laboratory of Marine Bioresources and Environment/Jiangsu Key Laboratory of Marine Biotechnology, Huaihai Institute of Technology, Lianyungang, China
- Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Huaihai Institute of Technology, Lianyungang, China
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10
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Cai YF, Shen X, Zhou L, Chu KH, Chan BKK. Mitochondrial genome of Tesseropora rosea: molecular evidence for non-monophyly of the genus Tetraclita. MITOCHONDRIAL DNA PART B-RESOURCES 2018; 3:92-94. [PMID: 33474078 PMCID: PMC7800120 DOI: 10.1080/23802359.2017.1422412] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
The complete mitochondrial genome of Tesseropora rosea (Tetraclitidae) was presented. The genome is a circular molecule of 15,330 bp, which encodes 13 PCGs, two rRNA genes, and 22 tRNA genes. The length of all non-coding regions is 768 bp, with the longest one speculated as the control region (255 bp), which is located between 12S rRNA and trnK. Phylogenetic analysis based on mitochondrial PCGs shows that T. rosea is nested within the genus Tetraclita, more closely related to Tetraclita japonica than to Tetraclita rufotincta or Tetraclita serrata. Thus, the monophyly of the genus Tetraclita is not supported.
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Affiliation(s)
- Yue Feng Cai
- Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Institute of Marine Resources, Huaihai Institute of Technology, Lianyungang, China.,Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Lianyungang, China
| | - Xin Shen
- Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Institute of Marine Resources, Huaihai Institute of Technology, Lianyungang, China.,Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Lianyungang, China
| | - Liang Zhou
- Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Institute of Marine Resources, Huaihai Institute of Technology, Lianyungang, China
| | - Ka Hou Chu
- Simon F. S. Li Marine Science Laboratory, School of Life Sciences, The Chinese University of Hong Kong, Hong Kong, China
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Nunez JCB, Elyanow RG, Ferranti DA, Rand DM. Population Genomics and Biogeography of the Northern Acorn Barnacle (Semibalanus balanoides) Using Pooled Sequencing Approaches. POPULATION GENOMICS 2018. [DOI: 10.1007/13836_2018_58] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
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Song J, Shen X, Chu KH, Chan BKK. Mitochondrial genome of the acorn barnacle Tetraclita rufotincta Pilsbry, 1916: highly conserved gene order in Tetraclitidae. MITOCHONDRIAL DNA PART B-RESOURCES 2017; 2:936-937. [PMID: 33474044 PMCID: PMC7799907 DOI: 10.1080/23802359.2017.1413305] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
The complete mitochondrial genome of the intertidal barnacle Tetraclita rufotincta Pilsbry, 1916 (Crustacea: Maxillopoda: Sessilia) is presented. The genome is a circular molecule of 15,236 bp, which encodes a set of 37 typical metazoan mitochondrial genes. All non-coding regions are 438 bp in length, with the longest one speculated as the control region (242 bp), which is located between srRNA and trnK. Comparison of the genome and those of three other species from Tetraclitidae shows that gene arrangement is identical, indicating that the mitochondrial gene order is highly conserved in the family. Moreover, in comparison with the pancrustacean ground pattern, the four species of Tetraclitidae share three large conserved gene blocks. Phylogenetic analysis based on 13 mitochondrial PCGs shows that Chelonbia testudinaria (Coronulidae) clusters with the four species of Tetraclitidae. Within Tetraclitidae, T. serrata clusters with T. japonica, and the two grouped with T. rufotincta with high support (BP = 100), with T. divisa as the most distantly related species (BP = 100).
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Affiliation(s)
- Jun Song
- Jiangsu Key Laboratory of Marine Biotechnology/Jiangsu Institute of Marine Resources, Huaihai Institute of Technology, Lianyungang, China.,Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Lianyungang, China
| | - Xin Shen
- Jiangsu Key Laboratory of Marine Biotechnology/Jiangsu Institute of Marine Resources, Huaihai Institute of Technology, Lianyungang, China.,Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Lianyungang, China
| | - Ka Hou Chu
- Simon F. S. Li Marine Science Laboratory, School of Life Sciences, The Chinese University of Hong Kong, Hong Kong, China
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Tsang LM, Shen X, Cheang CC, Chu KH, Chan BKK. Gene rearrangement and sequence analysis of mitogenomes suggest polyphyly of Archaeobalanid and Balanid barnacles (Cirripedia: Balanomorpha). ZOOL SCR 2017. [DOI: 10.1111/zsc.12246] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Affiliation(s)
- Ling Ming Tsang
- Institute of Marine Biology; National Taiwan Ocean University; Keelung 20224 Taiwan
| | - Xin Shen
- Simon F. S. Li Marine Science Laboratory; School of Life Sciences; The Chinese University of Hong Kong; Shatin NT Hong Kong China
- Jiangsu Key Laboratory of Marine Biotechnology/College of Marine Science; Huaihai Institute of Technology; Lianyungang 222005 China
| | - Chi Chiu Cheang
- Department of Science and Environmental Studies; The Education University of Hong Kong; Taipo Hong Kong China
| | - Ka Hou Chu
- Simon F. S. Li Marine Science Laboratory; School of Life Sciences; The Chinese University of Hong Kong; Shatin NT Hong Kong China
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Shen X, Tsang LM, Chu KH, Chan BKK. A unique duplication of gene cluster (S2–C–Y) in Epopella plicata (Crustacea) mitochondrial genome and phylogeny within Cirripedia. Mitochondrial DNA A DNA Mapp Seq Anal 2015; 28:285-287. [DOI: 10.3109/19401736.2015.1118082] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Affiliation(s)
- Xin Shen
- Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Institute of Marine Resources, Huaihai Institute of Technology, Lianyungang, China
- Co-Innovation Center of Jiangsu Marine Bio-Industry Technology, Lianyungang, China
- Simon F. S. Li Marine Science Laboratory School of Life Sciences, The Chinese University of Hong Kong, Shatin, NT, Hong Kong, China
| | - Ling Ming Tsang
- Institute of Marine Biology, National Taiwan Ocean University, Keelung, Taiwan
| | - Ka Hou Chu
- Simon F. S. Li Marine Science Laboratory School of Life Sciences, The Chinese University of Hong Kong, Shatin, NT, Hong Kong, China
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Shen X, Tsoi KH, Cheang CC. The model barnacleBalanus balanusLinnaeus, 1758 (Crustacea: Maxillopoda: Sessilia) mitochondrial genome and gene rearrangements within the family Balanidae. ACTA ACUST UNITED AC 2014; 27:2112-4. [DOI: 10.3109/19401736.2014.982581] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
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