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Sun W. The complete mitochondrial genome of Engraulis ringens (Engraulidae, Clupeiformes) and phylogenetic studies of Engraulidae. Mitochondrial DNA B Resour 2019; 4:3525-3526. [PMID: 33366069 PMCID: PMC7707291 DOI: 10.1080/23802359.2019.1675553] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2019] [Accepted: 09/25/2019] [Indexed: 11/30/2022] Open
Abstract
In this study, the complete mitochondrial genome of Engraulis ringens has been determined. The whole sequence is 16,690 bp in length and included the typical structure of 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes, and 2 non-coding regions (control region and L-strand replication origin). The overall base composition includes A 26.65%, T 26.09%, C 28.13%, G 19.13%, with a slightly A + T bias of 52.74%. Moreover, the 13 PCGs encode 3797 amino acids in total. The phylogenetic analysis of E. ringens in the Engraulidae family was constructed based on 12 PCGs encoded by the heavy strand, and the result showed that E. ringens is most closely related to Engraulis japonicus and Engraulis encrasicolus.
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Affiliation(s)
- Wei Sun
- Department of Automobile Engineering, Weifang Engineering Vocational College, Qingzhou, P. R. China
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Du X, Jiang H, Chen W, Lü Z, Gong L, Liu B, Ye Y, Liu L. The complete mitochondrial genome of Thryssa vitrirostris (Engraulinae, Engranlidae, Clupeoidei) and phylogenetic studies of Clupeoidei. Mitochondrial DNA B Resour 2019. [DOI: 10.1080/23802359.2018.1437808] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022] Open
Affiliation(s)
- Xun Du
- aNational Engineering Research Center of Marine Facilities Aquaculture, College of Marine Science and Technology, Zhejiang Ocean University, Zhoushan, People’s Republic of China
| | - Hui Jiang
- aNational Engineering Research Center of Marine Facilities Aquaculture, College of Marine Science and Technology, Zhejiang Ocean University, Zhoushan, People’s Republic of China
| | - Wei Chen
- aNational Engineering Research Center of Marine Facilities Aquaculture, College of Marine Science and Technology, Zhejiang Ocean University, Zhoushan, People’s Republic of China
| | - Zhenming Lü
- aNational Engineering Research Center of Marine Facilities Aquaculture, College of Marine Science and Technology, Zhejiang Ocean University, Zhoushan, People’s Republic of China
| | - Li Gong
- aNational Engineering Research Center of Marine Facilities Aquaculture, College of Marine Science and Technology, Zhejiang Ocean University, Zhoushan, People’s Republic of China
| | - Bingjian Liu
- aNational Engineering Research Center of Marine Facilities Aquaculture, College of Marine Science and Technology, Zhejiang Ocean University, Zhoushan, People’s Republic of China
| | - Yingying Ye
- aNational Engineering Research Center of Marine Facilities Aquaculture, College of Marine Science and Technology, Zhejiang Ocean University, Zhoushan, People’s Republic of China
| | - Liqin Liu
- aNational Engineering Research Center of Marine Facilities Aquaculture, College of Marine Science and Technology, Zhejiang Ocean University, Zhoushan, People’s Republic of China
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Zhang J, Zhang N, Li Y, Zhang R, Lin L. Complete mitochondrial DNA genome of Thryssa dussumieri (Valenciennes, 1848). Mitochondrial DNA B Resour 2019. [DOI: 10.1080/23802359.2019.1591208] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022] Open
Affiliation(s)
- Jing Zhang
- Fisheries College, Jimei University, Xiamen, China
| | - Nan Zhang
- Third Institute of Oceanography, Ministry of Natural Resources, Xiamen, China
| | - Yuan Li
- Third Institute of Oceanography, Ministry of Natural Resources, Xiamen, China
| | - Ran Zhang
- Third Institute of Oceanography, Ministry of Natural Resources, Xiamen, China
| | - Longshan Lin
- Third Institute of Oceanography, Ministry of Natural Resources, Xiamen, China
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Jiang H, Lü Z, Liu L, Liu B, Gong L. The complete mitochondrial genome of Thryssa hamiltonii (Engraulinae, Engranlidae, Clupeoidei) and phylogenetic studies of Clupeoidei. MITOCHONDRIAL DNA PART B-RESOURCES 2018; 3:110-111. [PMID: 33474086 PMCID: PMC7800704 DOI: 10.1080/23802359.2018.1424584] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
The complete mitochondrial genome of Thryssa hamiltonii has been determined. The whole sequence was 16,894 bp in length and included 13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes and one control region (D-loop). The overall base composition is A 30.77%, C 27.97%, G 16.25%, T 25.01%, with a slightly A + T bias of 55.78%. With the exception of ND6 and eight tRNA genes, all other mitochondrial genes are encoded on the heavy strand. Three tandem repeat sequences were observed in the control region. Phylogenetic tree was constructed based on 13 protein-coding genes sequences of 21 clupeoidei species, and the result showed that T. hamiltonii is most closely related to T. dussumieri. These mitogenome sequence data will be useful for population genetics and phylogenetic analysis of the Clupeoidei.
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Affiliation(s)
- Hui Jiang
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, College of Marine Science and Technology, Zhejiang Ocean University, Zhoushan, People's Republic of China
| | - Zhenming Lü
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, College of Marine Science and Technology, Zhejiang Ocean University, Zhoushan, People's Republic of China
| | - Liqing Liu
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, College of Marine Science and Technology, Zhejiang Ocean University, Zhoushan, People's Republic of China
| | - Bingjian Liu
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, College of Marine Science and Technology, Zhejiang Ocean University, Zhoushan, People's Republic of China
| | - Li Gong
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, College of Marine Science and Technology, Zhejiang Ocean University, Zhoushan, People's Republic of China
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Chen W, Jiang H, Du X, Gong L, Liu L, Liu B, Lü Z. The complete mitochondrial genome of Thryssa setirostris (Engraulinae, Engranlidae, Clupeoidei) and phylogenetic studies of Clupeoidei. Mitochondrial DNA B Resour 2018; 3:326-327. [PMID: 33474160 PMCID: PMC7799913 DOI: 10.1080/23802359.2018.1437807] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
Abstract
The complete mitochondrial genome of Thryssa setirostris has been determined. The whole sequence was 16,926 bp in length and included 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and 1 control region (D-loop). The overall base composition is A 29.88%, C 29.23%, G 16.77%, T 24.02%, with a slightly A + T bias of 54%. With the exception of ND6 and eight tRNA genes, all other mitochondrial genes are encoded on the heavy strand. Phylogenetic tree was constructed based on 13 protein-coding genes sequences of 21 clupeoidei species, and the result showed that T. setirostris is most closely related to T. dussumieri. These mitogenome sequence data will be useful for population genetics and phylogenetic analysis of the Clupeoidei.
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Affiliation(s)
- Wei Chen
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, College of Marine Science and Technology, Zhejiang Ocean University, Zhoushan, People’s Republic of China
| | - Hui Jiang
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, College of Marine Science and Technology, Zhejiang Ocean University, Zhoushan, People’s Republic of China
| | - Xun Du
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, College of Marine Science and Technology, Zhejiang Ocean University, Zhoushan, People’s Republic of China
| | - Li Gong
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, College of Marine Science and Technology, Zhejiang Ocean University, Zhoushan, People’s Republic of China
| | - Liqing Liu
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, College of Marine Science and Technology, Zhejiang Ocean University, Zhoushan, People’s Republic of China
| | - Bingjian Liu
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, College of Marine Science and Technology, Zhejiang Ocean University, Zhoushan, People’s Republic of China
| | - Zhenming Lü
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, College of Marine Science and Technology, Zhejiang Ocean University, Zhoushan, People’s Republic of China
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Jiang H, Gong L, Liu L, Liu B, Lü Z. The complete mitochondrial genome of Sardinella lemuru (Clupeinae, Clupeidae, Clupeoidei) and phylogenetic studies of Clupeoidei. MITOCHONDRIAL DNA PART B-RESOURCES 2017; 3:50-52. [PMID: 33474062 PMCID: PMC7800547 DOI: 10.1080/23802359.2017.1419085] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
The complete mitochondrial genome of Sardinella lemuru was sequenced using PCR amplification and primer walking sequence method. The complete mitochondrial genome of S. lemuru was 16,616 bp and contained 13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes, and one control region (D-loop). The overall base composition was A 25.04%, C 29.36%, G 20.40%, T 25.20%. In this study, the gene arrangement was consistent with other Sardinella mitochondrial genomes. Additionally, the phylogenetic relationships of 23 Clupeoidei species based on the complete genome was analyzed, and the result showed that S. lemuru firstly clustered with other two Sardinella species, S. albella and S. maderensis. These results would be useful for the investigation of phylogenetic relationship, taxonomic classification and phylogeography of the Clupeoidei.
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Affiliation(s)
- Hui Jiang
- National Engineering Research Center of Marine Facilities Aquaculture, College of Marine Science and Technology, Zhejiang Ocean University, Zhoushan, People's Republic of China
| | - Li Gong
- National Engineering Research Center of Marine Facilities Aquaculture, College of Marine Science and Technology, Zhejiang Ocean University, Zhoushan, People's Republic of China
| | - Liqin Liu
- National Engineering Research Center of Marine Facilities Aquaculture, College of Marine Science and Technology, Zhejiang Ocean University, Zhoushan, People's Republic of China
| | - Bingjian Liu
- National Engineering Research Center of Marine Facilities Aquaculture, College of Marine Science and Technology, Zhejiang Ocean University, Zhoushan, People's Republic of China
| | - Zhenming Lü
- National Engineering Research Center of Marine Facilities Aquaculture, College of Marine Science and Technology, Zhejiang Ocean University, Zhoushan, People's Republic of China
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