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Jeong JS, Kim HK, Park JS, Hwang HS, Kim I. Complete mitochondrial genome of the European common barnacle Perforatus perforatus Bruguière, 1789 (balanomorpha: balanidae). Mitochondrial DNA B Resour 2024; 9:823-827. [PMID: 38911522 PMCID: PMC11191835 DOI: 10.1080/23802359.2024.2368727] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2024] [Accepted: 06/11/2024] [Indexed: 06/25/2024] Open
Abstract
This study is the first to sequence the complete mitochondrial genome (mitogenome) of Perforatus perforatus Bruguière, 1789 (Balanomorpha: Balanidae). The 15,536-bp long P. perforatus mitogenome contained a typical set of animal mitochondrial genes, along with one control region. The P. perforatus mitogenome had an inverted gene block (trnP-ND4L-ND4-trnH-ND5-trnF) between trnS(gct) and trnT. This inverted gene block had been detected six species in three subfamilies of the Balanidae family (Balaninae, Acastinae and Megabalaninae), but our results show that it is also present in Concavinae, in which P. perforatus is included. The phylogenetic tree based on the concatenated sequences of the 13 protein-coding genes and two rRNA genes showed that P. perforatus is closely associated with Acasta sulcate and Balanus trigonus within Balanidae.
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Affiliation(s)
- Jun Seong Jeong
- Division of Genetic Resources, Honam National Institute of Biological Resources, Mokpo, Republic of Korea
| | - Hyun Kyong Kim
- Division of Zoology, Honam National Institute of Biological Resources, Mokpo, Republic of Korea
| | - Jeong Sun Park
- Department of Applied Biology, College of Agriculture and Life Sciences, Chonnam National University, Gwangju, Republic of Korea
| | - Hee-Seung Hwang
- Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA, USA
| | - Iksoo Kim
- Department of Applied Biology, College of Agriculture and Life Sciences, Chonnam National University, Gwangju, Republic of Korea
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Bae S, Kim P, Yi CH. The complete mitochondrial genome of Balanus trigonus (Thecostraca, Balanomorpha, Balanidae) from South Korea. MITOCHONDRIAL DNA PART B-RESOURCES 2021; 6:2736-2738. [PMID: 34447887 PMCID: PMC8386715 DOI: 10.1080/23802359.2021.1966335] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
Abstract
The complete sequence of the mitochondrial genome of Balanus trigonus Darwin, 1854 was examined using next-generation sequencing analysis. The complete mitogenome of B. trigonus has 15,336 bp in length and comprises 37 genes, namely, 13 protein-coding genes (PCGs), 22 tRNAs, and two rRNAs. Both the gene order and characteristics are consistent with those of other species within the family Balanidae. Phylogenetic analysis based on complete mitogenomes revealed taxonomic relationships among members of the family Balanidae.
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Affiliation(s)
- Seongjun Bae
- Department of Ecology and Conservation, Marine Biodiversity Institute of Korea, Seocheon, Republic of Korea.,Department of Ocean Environmental Sciences, College of Natural Science, Chungnam National University, Daejeon, Republic of Korea
| | - Philjae Kim
- Division of Ecological Conservation, Bureau of Ecological Research, National Institute of Ecology, Seocheon, Republic of Korea
| | - Chang-Ho Yi
- Department of Ecology and Conservation, Marine Biodiversity Institute of Korea, Seocheon, Republic of Korea
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Liu S, Mao S, Ge T, Cai Y, Ji N, Kong X, Shen X. The first mitochondrial genome of Balanus trigonus Darwin, 1854 (Sessilia: Balanidae) and molecular phylogeny within Cirripedia. MITOCHONDRIAL DNA PART B-RESOURCES 2021; 6:1740-1742. [PMID: 34104756 PMCID: PMC8158200 DOI: 10.1080/23802359.2021.1930216] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Abstract
The triangle barnacle Balanus trigonus Darwin, 1854, a cosmopolitan inhabitant of tropical and warm temperate seas, is a member of robust system for the study of evolutionary processes in the intertidal zone. The first mitochondrial genome of B. trigonus is presented. The complete mitochondrial genome of B. trigonus is a circular molecule of 15,560 bp, which encodes 13 protein-coding genes (PCGs), 2 rRNA genes, and 22 tRNA genes. In comparison within Sessilia, the arrangement of the mitochondrial genome of B. trigonus is more similar to Megabalanus spp. than the congener Balanus balanus, which share a same inversion of a large gene block (P-nd4L-nd4-H-nd5-F). Phylogenetic analysis based on mitochondrial PCGs reveals that B. trigonus clusters with Acasta Sulcata (BP = 100), then grouped with Megabalanus volcano and Megabalanus ajax with high support (BP = 90). In further, more data and research are needed to reveal the phylogeny within Cirripedia.
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Affiliation(s)
- Shishi Liu
- Jiangsu Institute of Marine Resources, Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang, China
| | - Sheng Mao
- Jiangsu Institute of Marine Resources, Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang, China
| | - Tian Ge
- Jiangsu Institute of Marine Resources, Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang, China
| | - Yuefeng Cai
- Jiangsu Institute of Marine Resources, Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang, China.,Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Jiangsu Ocean University, Lianyungang, China
| | - Nanjing Ji
- Jiangsu Institute of Marine Resources, Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang, China.,Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Jiangsu Ocean University, Lianyungang, China
| | - Xue Kong
- Jiangsu Institute of Marine Resources, Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang, China.,Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Jiangsu Ocean University, Lianyungang, China
| | - Xin Shen
- Jiangsu Institute of Marine Resources, Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang, China.,Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Jiangsu Ocean University, Lianyungang, China
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Feng M, Cao W, Wang C, Lin S, Sun D, Zhou Y. Complete mitochondrial genome of Tetraclita squamosa squamosa (Sessilia: Tetraclitidae) from China and phylogeny within Cirripedia. MITOCHONDRIAL DNA PART B-RESOURCES 2020; 5:2121-2123. [PMID: 33366942 PMCID: PMC7510661 DOI: 10.1080/23802359.2020.1765705] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/21/2020] [Accepted: 04/25/2020] [Indexed: 11/11/2022]
Abstract
Here we present the complete mitochondrial genome of Tetraclita squamosasquamosa, which is 15,191 bp in length with 67.20% AT content. It contains 13 protein-coding genes, 2 ribosomal-RNA genes and 22 transfer-RNA genes. All PCGs except nad4l in T. squamosasquamosa start with ATN, and terminated with a complete stop codon, except nad3. Phylogenetic analysis based on mitochondrial PCGs shows that T. squamosasquamosa is clustered with T. serrata into a branch (BP = 100). Our result is consistent with previous reports that genus Tetraclita and family Tetraclitidae are not monophyletic. This study contributes to further phylogenetic analysis within Cirripedia.
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Affiliation(s)
- Meiping Feng
- Key Laboratory of Marine Ecosystem Dynamics, Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, China.,Engineering Technology Research Center of Marine Ranching, Shanghai Ocean University, Shanghai, China.,College of Marine Ecology and Environment, Shanghai Ocean University, Shanghai, China
| | - Wenhao Cao
- CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China
| | - Chunsheng Wang
- Key Laboratory of Marine Ecosystem Dynamics, Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, China.,School of Oceanography, Shanghai Jiao Tong University, Shanghai, P. R. China
| | - Shiquan Lin
- Key Laboratory of Marine Ecosystem Dynamics, Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, China
| | - Dong Sun
- Key Laboratory of Marine Ecosystem Dynamics, Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, China
| | - Yadong Zhou
- Key Laboratory of Marine Ecosystem Dynamics, Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, China
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Mao S, Ge T, Chen P, Cai Y, Ji N, Shen X. The complete mitochondrial genome of Tetraclita japonica (Crustacea: Maxillopoda: Sessilia) from Zhejiang (China) and phylogeny within Sessilia. MITOCHONDRIAL DNA PART B-RESOURCES 2020; 5:2913-2915. [PMID: 33458000 PMCID: PMC7782338 DOI: 10.1080/23802359.2020.1791756] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
The complete mitochondrial genome of Tetraclita japonica (Crustacea: Maxillopoda: Sessilia) from Zhejiang (China) was presented (T. japonica ZJ). The genome is a circular molecule of 15,192 bp, all non-coding regions are 694 bp in length, and the longest one (307 bp) is located between 12S rRNA and trnK. Phylogenetic analysis based on mitochondrial PCGs shows that T. japonica ZJ clusters with T. japonica CN, and they grouped with T. japonica (BP = 100), then grouped with Tesseropora rosea, Tetraclita serrata, Tetraclita rufotincta, Epopella plicata, and Tetraclitella divisa successively . The phylogenetic tree indicated that the Balanidae and Archaeobalanidae are polyphyletic, while the Chthamalidae is monophyletic. The result can help us to understand the phylogenetic history within Sessilia.
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Affiliation(s)
- Sheng Mao
- Jiangsu Institute of Marine Resources/Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang, China.,Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Jiangsu Ocean University, Lianyungang, China
| | - Tian Ge
- Jiangsu Institute of Marine Resources/Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang, China
| | - Panpan Chen
- Jiangsu Institute of Marine Resources/Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang, China
| | - Yuefeng Cai
- Jiangsu Institute of Marine Resources/Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang, China
| | - Nanjing Ji
- Jiangsu Institute of Marine Resources/Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang, China
| | - Xin Shen
- Jiangsu Institute of Marine Resources/Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang, China.,Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Jiangsu Ocean University, Lianyungang, China
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Feng M, Lin S, Wang C, Sun D, Zhou Y, Bi Y, Xu K. The first mitochondrial genome of Megabalanus tintinnabulum (Sessilia: Balanidae) from China: phylogeny within Cirripedia based on mitochondrial genes. Mitochondrial DNA B Resour 2019; 4:4016-4018. [PMID: 33366296 PMCID: PMC7707791 DOI: 10.1080/23802359.2019.1688104] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2019] [Accepted: 10/27/2019] [Indexed: 11/02/2022] Open
Abstract
Here we present the complete mitochondrial genome of Megabalanus tintinnabulum. The genome is 15,107 bp in length with a 67.35% AT content. It contains 13 protein-coding genes (PCGs), 2 rRNAs genes, and 22 tRNAs. Both rRNAs are encoded on the light strand, as in the other crustacean and barnacle mitochondrial genomes. Besides five tRNAs are encoded on the light strand (nad1, trnV, trnL1, trnC, trnQ, and trnK). Only one PCG is encoded on the light strand (nad1), whereas the other 12 PCGs are located on the heavy strand, which is consistent with M. ajax. Phylogenetic analysis based on mitochondrial PCGs shows that M. tintinnabulum is clustered with M. ajax into a branch (BP = 100), and the group with M. volcano with high support. This study contributes to further phylogenetic analysis within Cirripedia.
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Affiliation(s)
- Meiping Feng
- Key Laboratory of Marine Ecosystem and Biogeochemistry, State Oceanic Administration & Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, PR China
- College of Marine Ecology and Environment, Shanghai Ocean University, Shanghai, PR China
- Marine and Fisheries Research Institute, Zhejiang Ocean University, Zhoushan, PR China
| | - Shiquan Lin
- Key Laboratory of Marine Ecosystem and Biogeochemistry, State Oceanic Administration & Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, PR China
| | - Chunsheng Wang
- Key Laboratory of Marine Ecosystem and Biogeochemistry, State Oceanic Administration & Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, PR China
- School of Oceanography, Shanghai Jiao Tong University, Shanghai, PR China
| | - Dong Sun
- Key Laboratory of Marine Ecosystem and Biogeochemistry, State Oceanic Administration & Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, PR China
| | - Yadong Zhou
- Key Laboratory of Marine Ecosystem and Biogeochemistry, State Oceanic Administration & Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, PR China
| | - Yuanxin Bi
- Marine and Fisheries Research Institute, Zhejiang Ocean University, Zhoushan, PR China
| | - Kaida Xu
- Marine and Fisheries Research Institute, Zhejiang Ocean University, Zhoushan, PR China
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Cai YF, Shen X, Zhou L, Chu KH, Chan BKK. Mitochondrial genome of Tesseropora rosea: molecular evidence for non-monophyly of the genus Tetraclita. MITOCHONDRIAL DNA PART B-RESOURCES 2018; 3:92-94. [PMID: 33474078 PMCID: PMC7800120 DOI: 10.1080/23802359.2017.1422412] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
The complete mitochondrial genome of Tesseropora rosea (Tetraclitidae) was presented. The genome is a circular molecule of 15,330 bp, which encodes 13 PCGs, two rRNA genes, and 22 tRNA genes. The length of all non-coding regions is 768 bp, with the longest one speculated as the control region (255 bp), which is located between 12S rRNA and trnK. Phylogenetic analysis based on mitochondrial PCGs shows that T. rosea is nested within the genus Tetraclita, more closely related to Tetraclita japonica than to Tetraclita rufotincta or Tetraclita serrata. Thus, the monophyly of the genus Tetraclita is not supported.
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Affiliation(s)
- Yue Feng Cai
- Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Institute of Marine Resources, Huaihai Institute of Technology, Lianyungang, China.,Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Lianyungang, China
| | - Xin Shen
- Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Institute of Marine Resources, Huaihai Institute of Technology, Lianyungang, China.,Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Lianyungang, China
| | - Liang Zhou
- Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Institute of Marine Resources, Huaihai Institute of Technology, Lianyungang, China
| | - Ka Hou Chu
- Simon F. S. Li Marine Science Laboratory, School of Life Sciences, The Chinese University of Hong Kong, Hong Kong, China
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Nunez JCB, Elyanow RG, Ferranti DA, Rand DM. Population Genomics and Biogeography of the Northern Acorn Barnacle (Semibalanus balanoides) Using Pooled Sequencing Approaches. POPULATION GENOMICS 2018. [DOI: 10.1007/13836_2018_58] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
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