1
|
Zhan Q, Gai Y, Zhao Y. Characterization of the complete mitochondrial genome of the Libelloides sibiricus (Neuroptera, Ascalaphidae). Mitochondrial DNA B Resour 2024; 9:493-499. [PMID: 38623174 PMCID: PMC11018059 DOI: 10.1080/23802359.2024.2339486] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2023] [Accepted: 04/01/2024] [Indexed: 04/17/2024] Open
Abstract
Libelloides sibiricus (Eversmann, 1850) is widely distributed in China, Korea and eastern Russia. To date, few studies have been conducted on this species, with the exception of morphological taxonomy studies. In this study, we sequenced the complete mitochondrial genome (mitogenome) of Libelloides sibiricus, which is 15,811 bp in length, with an overall A + T content of 74.8%, encoding 2 ribosomal RNA genes, 22 transfer RNA genes, 13 protein-coding genes, and a control region. The gene arrangement and components of L. sibiricus are identical to those of most other Neuropteran species. TAA is utilized as the termination codon for most PCGs and TAG for nd1, however, nd6 and atp6 used the incomplete termination codon TA- and cox1, cox2, nd5, cytb had termination codons consisting of only T-. In addition, we selected all known 59 species of Neuroptera from NCBI, and used Sialis hamata, Sialis melania, Sialis longidens and Sialis jiyuni (Megaloptera: Sialidae) as the outgroup. Phylogenetic analysis suggested that the mitogenome of L. sibiricus was the most closely related to L. macaronius and all the owlflies formed the monophyletic group within the superfamily Myrmeleontoidea.
Collapse
Affiliation(s)
- Qingbin Zhan
- Department of Criminal Science and Technology, Nanjing Police University, Nanjing, Jiangsu, China
- Key Laboratory of State Forestry and Grassland Administration on Wildlife Evidence Technology, Nanjing, Jiangsu, China
| | - Yunpeng Gai
- School of Grassland Science, Beijing Forestry University, Nanjing, JiangsuChina
| | - Yang Zhao
- Research Institute of Pomology, Nanjing Institute of Agricultural Sciences in Jiangsu Hilly Area, Nanjing, Jiangsu, China
| |
Collapse
|
2
|
Tian S, Jiang Y, Lai Y, Wang S, Liu X, Wang Y. New Mitogenomes of the Green Lacewing Tribe Ankylopterygini (Neuroptera: Chrysopidae: Chrysopinae) and Phylogenetic Implications of Chrysopidae. INSECTS 2023; 14:878. [PMID: 37999077 PMCID: PMC10672194 DOI: 10.3390/insects14110878] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/26/2023] [Revised: 11/09/2023] [Accepted: 11/10/2023] [Indexed: 11/25/2023]
Abstract
Chrysopidae (green lacewings) are a cosmopolitan and species-rich family of Neuroptera, with remarkable significance of biological control against various agricultural and forestry pests. However, the phylogenetic position of Chrysopidae in Neuroptera and the internal relationships within the family remain equivocal among previous studies based on different types of data and sampling. Here we sequenced the mitochondrial genomes (mitogenomes) of two species of the genus Ankylopteryx in the chrysopine tribe Ankylopterygini for the first time. The characteristics of these mitogenomes were analyzed in comparison with other green lacewing mitogenomes published to date. In the phylogeny herein reconstructed based on mitogenomes, Chrysopinae were recovered as the sister group to Apochrysinae + Nothochrysinae. Within the subfamily of Chrysopinae, Nothancylini were recovered as the sister group to (Leucochrysini + Belonopterygini) + (Ankylopterygini + Chrysopini). The divergence time estimation suggested an Early Cretaceous initial divergence within the extant Chrysopidae. Within Chrysopinae, the four tribes except Nothancylini diverged around mid-Cretaceous.
Collapse
Affiliation(s)
- Shuo Tian
- College of Plant Protection, Hebei Agricultural University, Baoding 071001, China; (S.T.); (Y.J.); (S.W.)
| | - Yunlan Jiang
- College of Plant Protection, Hebei Agricultural University, Baoding 071001, China; (S.T.); (Y.J.); (S.W.)
| | - Yan Lai
- Department of Entomology, China Agricultural University, Beijing 100193, China;
| | - Shutong Wang
- College of Plant Protection, Hebei Agricultural University, Baoding 071001, China; (S.T.); (Y.J.); (S.W.)
| | - Xingyue Liu
- Department of Entomology, China Agricultural University, Beijing 100193, China;
| | - Yuyu Wang
- College of Plant Protection, Hebei Agricultural University, Baoding 071001, China; (S.T.); (Y.J.); (S.W.)
| |
Collapse
|
3
|
Zhao Y, Jing J, Zhang N, Shao H. The complete mitochondrial genome of Hemerobius spodipennis (Neuroptera: Hemerobiidae). Mitochondrial DNA B Resour 2020; 5:2105-2106. [PMID: 33366934 PMCID: PMC7510669 DOI: 10.1080/23802359.2020.1764400] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2020] [Accepted: 04/26/2020] [Indexed: 11/27/2022] Open
Abstract
The complete mitochondrial genome of Hemerobius spodipennis Yang, 1987 was sequenced in this study. The complete mitochondrial genome is a typical double-stranded circular molecule of 16,343 bp (GenBank accession number: MT268963) comprising of 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and a control region. The gene order is identical to that of the putative ancestral arrangement of insects and other lacewings. All protein-coding genes initiate with ATN, except COI use CGA as start codons and terminate with TAG or TAA, expect ND5 and ND4 use TA– or a single T–– residue as the stop codon. All tRNAs, ranging from 63 to 72 bp, can be folded into typical clover-leaf secondary structure except for tRNASer(AGN), in which the dihydrouridine (DHU) arm did not form a stable stem-loop structure. The control region is 1433 bp long with an A + T content of 91.4%. In the sampled families of Neuroptera, each family showed a monophyletic cluster and Polystoechotidae + Rapismatidae, Hemerobiidae + (Chrysopidae + (Polystoechotidae + Rapismatidae)), are recovered in phylogenetic analyses with high supports.
Collapse
Affiliation(s)
- Yang Zhao
- Nanjing Institute of Agricultural Sciences in Jiangsu Hilly Area, Nanjing, P.R. China
| | - Jinquan Jing
- Nanjing Institute of Agricultural Sciences in Jiangsu Hilly Area, Nanjing, P.R. China
| | - Ningning Zhang
- Nanjing Institute of Agricultural Sciences in Jiangsu Hilly Area, Nanjing, P.R. China
| | - Heping Shao
- Nanjing Institute of Agricultural Sciences in Jiangsu Hilly Area, Nanjing, P.R. China
| |
Collapse
|
4
|
Zhao Y, Shao H, Zhang N, Jing J. The complete mitochondrial genome of Hemerobius japonicus (Neuroptera: Hemerobiidae). Mitochondrial DNA B Resour 2020; 5:879-880. [PMID: 33366794 PMCID: PMC7748667 DOI: 10.1080/23802359.2020.1717386] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022] Open
Abstract
The complete mitochondrial genome of Hemerobius japonicus Nakahara, 1915 was sequenced in this study. The complete mitochondrial genome is a typical double-stranded circular molecule of 18,585 bp (GenBank accession number: MN852445), containing 37 typical animal mitochondrial gene and an A + T-rich region. The gene order is identical to that of the putative ancestral arrangement of insects and other lacewings. 13 protein-coding genes (PCGs) possessed common triplet initiation codons ATN except ND1 possessed TTG and mostly terminated with TAN codons except for ND5 and ND4 with a single T residue adjacent to a downstream tRNA gene. All of the 22 tRNAs, ranging from 63 to 72 bp, can be folded into classic clover-leaf secondary structure except for tRNASer(AGN), in which the dihydrouridine (DHU) arm did not form a stable stem-loop structure. The control region is 1416 bp long with an A + T content of 90.3%. In the sampled families of Neuroptera, each family showed a monophyletic cluster and Polystoechotidae + Rapismatidae, Osmylidae + the remaining families, Hemerobiidae + (Chrysopidae + (Polystoechotidae + Rapismatidae)) are recovered in phylogenetic analyses with high supports.
Collapse
Affiliation(s)
- Yang Zhao
- Nanjing Institute of Agricultural Sciences in Jiangsu Hilly Area, Nanjing, P.R. China
| | - Heping Shao
- Nanjing Institute of Agricultural Sciences in Jiangsu Hilly Area, Nanjing, P.R. China
| | - Ningning Zhang
- Nanjing Institute of Agricultural Sciences in Jiangsu Hilly Area, Nanjing, P.R. China
| | - Jinquan Jing
- Nanjing Institute of Agricultural Sciences in Jiangsu Hilly Area, Nanjing, P.R. China
| |
Collapse
|
5
|
Park J, Park J, Kim JH, Cho JR, Kim Y, Seo BY. The complete mitochondrial genome of Micromus angulatus (Stephens, 1836) (Neuroptera: Hemerobiidae). Mitochondrial DNA B Resour 2019. [DOI: 10.1080/23802359.2019.1598800] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022] Open
Affiliation(s)
- Jongsun Park
- InfoBoss Co. Ltd., Seoul, Republic of Korea
- InfoBoss Research Center, Seoul, Republic of Korea
| | - Jonghyun Park
- InfoBoss Co. Ltd., Seoul, Republic of Korea
- InfoBoss Research Center, Seoul, Republic of Korea
| | - Jeong-Hwan Kim
- Crop Protection Division, National Institute of Agricultural Sciences, RDA, Wanju, Republic of Korea
| | - Jum Rae Cho
- Crop Protection Division, National Institute of Agricultural Sciences, RDA, Wanju, Republic of Korea
| | - Yongsung Kim
- InfoBoss Co. Ltd., Seoul, Republic of Korea
- InfoBoss Research Center, Seoul, Republic of Korea
| | - Bo Yoon Seo
- Crop Protection Division, National Institute of Agricultural Sciences, RDA, Wanju, Republic of Korea
| |
Collapse
|
6
|
Gao XY, Cai YY, Yu DN, Storey KB, Zhang JY. Characteristics of the complete mitochondrial genome of Suhpalacsa longialata (Neuroptera, Ascalaphidae) and its phylogenetic implications. PeerJ 2018; 6:e5914. [PMID: 30479895 PMCID: PMC6240338 DOI: 10.7717/peerj.5914] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2018] [Accepted: 10/10/2018] [Indexed: 12/05/2022] Open
Abstract
The owlflies (Family Ascalaphidae) belong to the Neuroptera but are often mistaken as dragonflies because of morphological characters. To date, only three mitochondrial genomes of Ascalaphidae, namely Libelloides macaronius; Ascaloptynx appendiculatus; Ascalohybris subjacens, are published in GenBank, meaning that they are greatly under-represented in comparison with the 430 described species reported in this family. In this study, we sequenced and described the complete mitochondrial genome of Suhpalacsa longialata (Neuroptera, Ascalaphidae). The total length of the S. longialata mitogenome was 15,911 bp, which is the longest known to date among the available family members of Ascalaphidae. However, the size of each gene was similar to the other three Ascalaphidae species. The S. longialata mitogenome included a transposition of tRNACys and tRNATrp genes and formed an unusual gene arrangement tRNACys-tRNATrp-tRNATyr (CWY). It is likely that the transposition occurred by a duplication of both genes followed by random loss of partial duplicated genes. The nucleotide composition of the S. longialata mitogenome was as follows: A = 41.0%, T = 33.8%, C = 15.5%, G = 9.7%. Both Bayesian inference and ML analyses strongly supported S. longialata as a sister clade to (Ascalohybris subjacens + L. macaronius), and indicated that Ascalaphidae is not monophyletic.
Collapse
Affiliation(s)
- Xin-Yan Gao
- College of Chemistry and Life Science, Zhejiang Normal University, Jinhua, Zhejiang, China
| | - Yin-Yin Cai
- College of Chemistry and Life Science, Zhejiang Normal University, Jinhua, Zhejiang, China
| | - Dan-Na Yu
- College of Chemistry and Life Science, Zhejiang Normal University, Jinhua, Zhejiang, China
- Key Lab of Wildlife Biotechnology, Conservation and Utilization of Zhejiang Province, Zhejiang Normal University, Jinhua, Zhejiang, China
| | | | - Jia-Yong Zhang
- College of Chemistry and Life Science, Zhejiang Normal University, Jinhua, Zhejiang, China
- Key Lab of Wildlife Biotechnology, Conservation and Utilization of Zhejiang Province, Zhejiang Normal University, Jinhua, Zhejiang, China
| |
Collapse
|
7
|
Jiang Y, Garzón-Orduña IJ, Winterton SL, Yang F, Liu X. Phylogenetic relationships among tribes of the green lacewing subfamily Chrysopinae recovered based on mitochondrial phylogenomics. Sci Rep 2017; 7:7218. [PMID: 28775310 PMCID: PMC5543154 DOI: 10.1038/s41598-017-07431-1] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2017] [Accepted: 06/28/2017] [Indexed: 11/24/2022] Open
Abstract
Chrysopidae (green lacewings) is the second largest family in Neuroptera, and it includes medium-size lacewings largely recognized by the presence of golden-colored eyes, bright green bodies and delicate wings with dense venation patterns. The subfamily Chrysopinae includes 97% of the species diversity in the family and it is currently divided into four tribes: Ankylopterygini, Belonopterygini, Chrysopini and Leucochrysini. Here we sequenced and annotated the nearly complete mitochondrial genomes of four species of each these tribes: Abachrysa eureka, Italochrysa insignis, Leucochrysa pretiosa, Parankyloteryx sp. We then reconstructed the phylogenetic relationships with estimated divergence times among tribes of Chrysopinae based on the mt genomic data. Our results suggest that Chrysopinae sans Nothancyla verreauxi evolved as two reciprocally monophyletic lineages formed by stem members of the tribes Leucochrysini plus Belonopterygini on one hand, and the stem members of Ankylopterygini plus Chrysopini on the other. Our estimations of divergence times place the diversification of stem Chrysopinae into the extant tribes during the Middle Jurassic to Late Cretaceous. The relatively young ages previously estimated for the green lacewing divergences were probably underestimated due to false inferences of homology between non-sister taxa that are later correctly identified as homoplasy after more taxa are added.
Collapse
Affiliation(s)
- Yunlan Jiang
- Department of Entomology, China Agricultural University, Beijing, 100193, China
| | - Ivonne J Garzón-Orduña
- California State Collection of Arthropods, California Department of Food and Agriculture, Sacramento, CA, 95832, USA
| | - Shaun L Winterton
- California State Collection of Arthropods, California Department of Food and Agriculture, Sacramento, CA, 95832, USA
| | - Fan Yang
- Department of Entomology, China Agricultural University, Beijing, 100193, China
| | - Xingyue Liu
- Department of Entomology, China Agricultural University, Beijing, 100193, China.
| |
Collapse
|