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Haque MA, Alam MZ, Iqbal A, Lee YM, Dang CG, Kim JJ. Evaluation of accuracies of genomic predictions for body conformation traits in Korean Holstein. Anim Biosci 2024; 37:555-566. [PMID: 38271974 PMCID: PMC10915218 DOI: 10.5713/ab.23.0237] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2023] [Revised: 08/31/2023] [Accepted: 11/22/2023] [Indexed: 01/27/2024] Open
Abstract
OBJECTIVE This study aimed to assess the genetic parameters and accuracy of genomic predictions for twenty-four linear body conformation traits and overall conformation scores in Korean Holstein dairy cows. METHODS A dataset of 2,206 Korean Holsteins was collected, and genotyping was performed using the Illumina Bovine 50K single nucleotide polymorphism (SNP) chip. The traits investigated included body traits (stature, height at front end, chest width, body depth, angularity, body condition score, and locomotion), rump traits (rump angle, rump width, and loin strength), feet and leg traits (rear leg set, rear leg rear view, foot angle, heel depth, and bone quality), udder traits (udder depth, udder texture, udder support, fore udder attachment, front teat placement, front teat length, rear udder height, rear udder width, and rear teat placement), and overall conformation score. Accuracy of genomic predictions was assessed using the single-trait animal model genomic best linear unbiased prediction method implemented in the ASReml-SA v4.2 software. RESULTS Heritability estimates ranged from 0.10 to 0.50 for body traits, 0.21 to 0.35 for rump traits, 0.13 to 0.29 for feet and leg traits, and 0.05 to 0.46 for udder traits. Rump traits exhibited the highest average heritability (0.29), while feet and leg traits had the lowest estimates (0.21). Accuracy of genomic predictions varied among the twenty-four linear body conformation traits, ranging from 0.26 to 0.49. The heritability and prediction accuracy of genomic estimated breeding value (GEBV) for the overall conformation score were 0.45 and 0.46, respectively. The GEBVs for body conformation traits in Korean Holstein cows had low accuracy, falling below the 50% threshold. CONCLUSION The limited response to selection for body conformation traits in Korean Holsteins may be attributed to both the low heritability of these traits and the lower accuracy estimates for GEBVs. Further research is needed to enhance the accuracy of GEBVs and improve the selection response for these traits.
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Affiliation(s)
- Md Azizul Haque
- Department of Biotechnology, Yeungnam University, Gyeongsan 38541,
Korea
| | | | - Asif Iqbal
- Department of Biotechnology, Yeungnam University, Gyeongsan 38541,
Korea
| | - Yun Mi Lee
- Department of Biotechnology, Yeungnam University, Gyeongsan 38541,
Korea
| | - Chang Gwon Dang
- Animal Breeding and Genetics Division, National Institute of Animal Science, Cheonan, 31000,
Korea
| | - Jong Joo Kim
- Department of Biotechnology, Yeungnam University, Gyeongsan 38541,
Korea
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Jagusiak W, Ptak E, Otwinowska-Mindur A, Zarnecki A. Genetic relationships of body condition score and locomotion with production, type and fertility traits in Holstein-Friesian cows. Animal 2023; 17:100816. [PMID: 37172357 DOI: 10.1016/j.animal.2023.100816] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2022] [Revised: 04/03/2023] [Accepted: 04/06/2023] [Indexed: 05/14/2023] Open
Abstract
New traits are sought to add in breeding goals to prevent worsening health and fertility of Polish Holstein-Friesian cows. The objectives of this study were to estimate genetic parameters for body condition score (BCS) and locomotion (LOC) and their relationship with other type traits, milk and fertility traits, and to show genetic trends for BCS and LOC in Polish Holstein-Friesian population. Data on 317 028 Holstein-Friesian cows, born from 2010 through 2015 in 11 792 herds, were collected. All cows were scored for BCS and 43% of them for LOC. All records comprised lactational yields of milk, fat and protein, content of fat and protein and somatic cell count from the first three lactations, stature, five composite and 16 linear conformation traits, and four fertility traits. Genetic parameters were estimated using a Bayesian method with Gibbs Sampling, generating 100 000 samples in each of four steps: BCS and LOC with five composite conformation traits, BCS and LOC with 16 linear conformation traits, BCS and LOC with production traits, and BCS and LOC with four fertility traits. The linear model for BCS and LOC contained fixed effects of herd-year-season-classifier and lactation stage, fixed linear and quadratic regressions on age at calving, fixed linear regression on the percentage of Holstein-Friesian genes, and random additive genetic effect. Breeding values for BCS and LOC were calculated using the same model as used for estimation of genetic parameters. Genetic trends for BCS and LOC, defined as regression coefficients of mean breeding value on birth year, were examined. BCS was a moderately heritable trait (0.19) and was genetically correlated with non-return rate until 56 days after first insemination for cows (-0.32) and with days open (-0.22), so selection for BCS might have a favourable correlated effect on fertility. LOC, lowly heritable (0.06), was relatively strongly genetically correlated with feet-and-legs traits (from 0.48 to 0.93, ignoring sign) and could be included in a selection subindex for feet-and-legs. The positive trend for LOC indicated substantial progress towards the highest genetic value (optimum at the end of the scale), while the small trend for BCS showed a tendency to stabilise the average value in the middle of the scale (optimum for BCS). The estimates of the genetic parameters for BCS and LOC indicate that both traits could contribute to more effective selection to improve fertility (BCS) and legs health (LOC) in the Polish dairy cattle population.
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Affiliation(s)
- W Jagusiak
- Department of Genetics, Animal Breeding and Ethology, University of Agriculture in Krakow, al. Mickiewicza 24/28, 30-059 Krakow, Poland.
| | - E Ptak
- Department of Genetics, Animal Breeding and Ethology, University of Agriculture in Krakow, al. Mickiewicza 24/28, 30-059 Krakow, Poland
| | - A Otwinowska-Mindur
- Department of Genetics, Animal Breeding and Ethology, University of Agriculture in Krakow, al. Mickiewicza 24/28, 30-059 Krakow, Poland
| | - A Zarnecki
- National Research Institute of Animal Production, ul. Krakowska 1, 32-083 Balice, Poland
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Estimation of Genetic Parameters for Conformation Traits and Milk Production Traits in Chinese Holsteins. Animals (Basel) 2022; 13:ani13010100. [PMID: 36611708 PMCID: PMC9817994 DOI: 10.3390/ani13010100] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2022] [Revised: 12/11/2022] [Accepted: 12/16/2022] [Indexed: 12/29/2022] Open
Abstract
The objective of this study was to explore the genetic parameters of conformation traits and milk production traits in Chinese Holstein cattle and to provide a reference for dairy cattle breeding. We collected the phenotypic data of 23 conformation traits and five milk production traits of Chinese Holsteins and used animal models to estimate the genetic parameters of conformation traits and milk production traits. The estimated heritability of conformation traits ranged from 0.11 (angularity) to 0.37 (heel depth) and the genetic correlation between conformation traits ranged from -0.73 (bone quality and rear leg-rear view) to 0.76 (chest width and loin strength). The heritability of milk production traits ranged from 0.23 (somatic cell score) to 0.50 (305-d milk yield). The estimated values of genetic correlation between conformation traits and milk production traits ranged from -0.56 (heel depth and 305-d milk yield) to 0.57 (udder texture and milk fat percentage). There was a positive genetic correlation between most conformation traits and milk fat percentage, but a weak negative genetic correlation with milk yield. Strengthening the moderately and highly heritable milk production and conformation traits, especially the selection of rear udder traits and body shape total score, will be beneficial in improving the performance of dairy cows.
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Lopes FB, Rosa GJ, Pinedo P, Santos JE, Chebel RC, Galvao KN, Schuenemann GM, Bicalho RC, Gilbert RO, Rodriguez-Zas SL, Seabury CM, Rezende F, Thatcher W. Investigating functional relationships among health and fertility traits in dairy cows. Livest Sci 2022. [DOI: 10.1016/j.livsci.2022.105122] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
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Factor Analysis of Genetic Parameters for Body Conformation Traits in Dual-Purpose Simmental Cattle. Animals (Basel) 2022; 12:ani12182433. [PMID: 36139293 PMCID: PMC9495085 DOI: 10.3390/ani12182433] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2022] [Revised: 08/17/2022] [Accepted: 09/12/2022] [Indexed: 11/30/2022] Open
Abstract
Simple Summary Body conformation traits are closely related to economically important characteristics and should be considered in cattle breeding programs. A variety of body conformation traits recorded by classifiers can complicate the analysis process. Factor analysis can reduce the number of variables by combining two or more variables into a single factor, which has biological significance. The results of this study could be used by breeders to define conformation indexes and implement genetic assessments for conformation traits in dual-purpose breeds. Abstract In this study, we estimated the genetic parameters for 6 composite traits and 27 body conformation traits of 1016 dual-purpose Simmental cattle reared in northwestern China from 2010 to 2019 using a linear animal mixed model. To integrate these traits, a variety of methods were used as follows: (1) genetic parameters estimates for composite and individual body conformation traits based on the pedigree relationship matrix (A) and combined genomic-pedigree relationship matrix (H); (2) factor analysis to explore the relationships among body conformation traits; and (3) genetic parameters of factor scores estimated using A and H, and the correlations of EBVs of the factor scores and EBVs of the composite traits. Heritability estimates of the composite traits using A and H were low to medium (0.07–0.47). The 24 common latent factors explained 96.13% of the total variance. Among factors with eigenvalues ≥ 1, F1 was mainly related to body frame, muscularity, and rump; F2 was related to feet and legs; F3, F4, F5, and F6 were related to teat placement, teat size, udder size, and udder conformation; and F7 was related to body frame. Single-trait analysis of factor scores yielded heritability estimates that were low to moderate (0.008–0.43 based on A and 0.04–0.43 based on H). Spearman and Pearson correlations, derived from the best linear unbiased prediction analysis of composite traits and factor scores, showed a similar pattern. Thus, incorporating factor analysis into the morphological evaluation to simplify the assessment of body conformation traits may improve the genetics of dual-purpose Simmental cattle.
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Buonaiuto G, Lopez-Villalobos N, Niero G, Degano L, Dadati E, Formigoni A, Visentin G. The application of Legendre Polynomials to model muscularity and body condition score in primiparous Italian Simmental cattle. ITALIAN JOURNAL OF ANIMAL SCIENCE 2022. [DOI: 10.1080/1828051x.2022.2032850] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
- Giovanni Buonaiuto
- Dipartimento di Scienze Mediche Veterinarie, Alma Mater Studiorum – University of Bologna, Ozzano dell’Emilia (BO), Italy
| | | | - Giovanni Niero
- Dipartimento di Agronomia, Animali, Alimenti, Risorse Naturali e Ambiente, University of Padova, Padova, Italy
| | - Lorenzo Degano
- Associazione Nazionale Allevatori Razza Pezzata Rossa Italiana (ANAPRI), Udine, Italy
| | | | - Andrea Formigoni
- Dipartimento di Scienze Mediche Veterinarie, Alma Mater Studiorum – University of Bologna, Ozzano dell’Emilia (BO), Italy
| | - Giulio Visentin
- Dipartimento di Scienze Mediche Veterinarie, Alma Mater Studiorum – University of Bologna, Ozzano dell’Emilia (BO), Italy
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van Marle-Köster E, Visser C. Unintended consequences of selection for increased production on the health and welfare of livestock. Arch Anim Breed 2021; 64:177-185. [PMID: 34109267 PMCID: PMC8182664 DOI: 10.5194/aab-64-177-2021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2020] [Accepted: 04/13/2021] [Indexed: 11/25/2022] Open
Abstract
Modern farming technologies, including quantitative selection and breeding methods in farm animal species, resulted in increased production and efficiency. Selection for increased output in both intensive and extensive production systems has trade-offs and negative outcomes, often more pronounced in intensive systems. Animal welfare and health are often adversely affected and this influences sustainable production. The relative importance of animal welfare differs among developed and developing countries due to the level of economic development, food security and education, as well as religious and cultural practices which presents challenges for sound scientific research. Due to breeding goals in the past set on growth performance, traits such as fertility, welfare and health have been neglected. Fertility is the single most important trait in all livestock species. Reduced fertility and lameness, claw health and mastitis results in unnecessary culling and reduced longevity. Selection pressure for growth accompanied with inbreeding has resulted in a number of genetic defects in beef, sheep and pigs. This review demonstrated the importance of inclusion of animal welfare concepts into breeding objectives and selection strategies. Accurate phenotyping of welfare traits is a limiting factor in the implementation of mitigating strategies, which include diagnostic testing, control of inbreeding and genomic selection.
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Affiliation(s)
- Este van Marle-Köster
- Faculty of Natural and Agricultural Sciences, Department of Animal Science, University of Pretoria, Pretoria 0028,
South Africa
| | - Carina Visser
- Faculty of Natural and Agricultural Sciences, Department of Animal Science, University of Pretoria, Pretoria 0028,
South Africa
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O'Sullivan M, Butler ST, Pierce KM, Crowe MA, O'Sullivan K, Fitzgerald R, Buckley F. Reproductive efficiency and survival of Holstein-Friesian cows of divergent Economic Breeding Index, evaluated under seasonal calving pasture-based management. J Dairy Sci 2019; 103:1685-1700. [PMID: 31837792 DOI: 10.3168/jds.2019-17374] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2019] [Accepted: 10/13/2019] [Indexed: 12/14/2022]
Abstract
The objective of the current study was to examine phenotypic fertility performance and survival, and to gain insight into underlying factors that may contribute to greater fertility performance in 2 divergent genetic groups (GG) of Holstein-Friesian, selected using the Irish Economic Breeding Index (EBI). The GG were evaluated across 3 spring calving pasture-based feeding treatments (FT) over 4 yr. The 2 divergent GG were (1) high EBI; representative of the top 5% nationally (elite), and (2) EBI representative of the national average (NA). In each year, 90 elite and 45 NA cows were randomly allocated to 1 of 3 FT: control, lower grass allowance, and high concentrate. No interaction between GG and FT was observed for any of the measures of fertility investigated. The elite cows achieved significantly greater pregnancy rate to first service (+14.9 percentage points), and significantly greater pregnancy rates after 21, 42, and 84 d of breeding (+17.3, +15.2, and +9.6 percentage points, respectively) compared with NA. The number of services per cow was fewer for elite (1.57) compared with NA (1.80). The interval from mating start date to pregnancy was significantly shorter for elite cows compared with NA. The elite cows maintained greater mean body condition score than NA throughout the study (2.91 vs. 2.72), and had greater body condition score at calving, artificial insemination, and drying off compared with NA. The elite cows had greater mean circulating concentrations of insulin-like growth factor-1 compared with NA. No significant effect was observed of GG on commencement of luteal activity, or progesterone profile variables. Greater survival to the start of fifth lactation was observed for elite cows. The elite cows were 43% less likely to be culled than NA by the beginning of the fifth lactation. The results highlight the success of the Economic Breeding Index to deliver reproductive performance and longevity consistent with industry targets across a range of seasonal pasture-based FT. The results also clearly demonstrate the potential of appropriate genetic selection to reverse negative fertility trends incurred during previous decades of selection for milk production alone.
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Affiliation(s)
- M O'Sullivan
- Animal and Grassland Research and Innovation Centre, Teagasc Moorepark, Fermoy, Co. Cork, P61 C997, Ireland; School of Agriculture and Food Science, University College Dublin, Belfield, Dublin, D04 N2E5, Ireland
| | - S T Butler
- Animal and Grassland Research and Innovation Centre, Teagasc Moorepark, Fermoy, Co. Cork, P61 C997, Ireland
| | - K M Pierce
- School of Agriculture and Food Science, University College Dublin, Belfield, Dublin, D04 N2E5, Ireland
| | - M A Crowe
- School of Veterinary Medicine, University College Dublin, Belfield, Dublin, D04 N2E5, Ireland
| | - K O'Sullivan
- School of Mathematical Sciences, University College Cork, Cork, T12 XF62, Ireland
| | - R Fitzgerald
- Animal and Grassland Research and Innovation Centre, Teagasc Moorepark, Fermoy, Co. Cork, P61 C997, Ireland
| | - F Buckley
- Animal and Grassland Research and Innovation Centre, Teagasc Moorepark, Fermoy, Co. Cork, P61 C997, Ireland; School of Agriculture and Food Science, University College Dublin, Belfield, Dublin, D04 N2E5, Ireland.
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9
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Martin P, Baes C, Houlahan K, Richardson C, Jamrozik J, Miglior F. Genetic correlations among selected traits in Canadian Holsteins. CANADIAN JOURNAL OF ANIMAL SCIENCE 2019. [DOI: 10.1139/cjas-2018-0190] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
In the Canadian dairy industry, there are currently over 80 traits routinely evaluated, and more are considered for potential selection. Particularly, in the last few years, recording has commenced for several new phenotypes required to introduce novel traits with high economic importance into the selection program. However, without a systematic estimation of the genetic correlations that exist among traits, the potential results of indirect selection are unknown. Therefore, 29 traits representative of the trait diversity for first lactation Canadian animals were selected. Their two-by-two genetic correlations were estimated from a dataset of 62 498 first lactation Holstein cows, using a Markov Chain Monte Carlo Gibbs sampling approach. The general tendencies among the groups of traits confirm that production traits are negatively correlated with fertility traits and that functional traits are positively correlated with one another. The association of udder depth with fertility and disease resistance has also been highlighted. This contribution offers a comprehensive overview of current estimates across traits and includes correlations with novel traits that constitute an original addition to the literature. These new estimates can be used for newly developed genomic evaluation models and possibly lead to more accurate estimations of the dairy cows’ overall genetic merit.
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Affiliation(s)
- P. Martin
- Centre for Genetic Improvement of Livestock, Department of Animal Biosciences, University of Guelph, Guelph, ON N1G 2W1, Canada
- Génétique Animale et Biologie Intégrative (GABI), Institut National de la Recherche Agronomique (INRA), AgroParisTech, Université Paris-Saclay, 78352 Jouy-en-Josas, France
| | - C. Baes
- Centre for Genetic Improvement of Livestock, Department of Animal Biosciences, University of Guelph, Guelph, ON N1G 2W1, Canada
| | - K. Houlahan
- Centre for Genetic Improvement of Livestock, Department of Animal Biosciences, University of Guelph, Guelph, ON N1G 2W1, Canada
| | - C.M. Richardson
- Centre for Genetic Improvement of Livestock, Department of Animal Biosciences, University of Guelph, Guelph, ON N1G 2W1, Canada
| | - J. Jamrozik
- Centre for Genetic Improvement of Livestock, Department of Animal Biosciences, University of Guelph, Guelph, ON N1G 2W1, Canada
- Canadian Dairy Network, Guelph, ON N1K 1E5, Canada
| | - F. Miglior
- Centre for Genetic Improvement of Livestock, Department of Animal Biosciences, University of Guelph, Guelph, ON N1G 2W1, Canada
- Canadian Dairy Network, Guelph, ON N1K 1E5, Canada
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Roveglia C, Niero G, Bobbo T, Penasa M, Finocchiaro R, Visentin G, Lopez-Villalobos N, Cassandro M. Genetic parameters for linear type traits including locomotion in Italian Jersey cattle breed. Livest Sci 2019. [DOI: 10.1016/j.livsci.2019.09.023] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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11
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Setiaji A, Oikawa T. Genetic parameters of reproductive traits from artificial insemination records of Japanese Black cows. Livest Sci 2019. [DOI: 10.1016/j.livsci.2019.09.018] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Olasege BS, Zhang S, Zhao Q, Liu D, Sun H, Wang Q, Ma P, Pan Y. Genetic parameter estimates for body conformation traits using composite index, principal component, and factor analysis. J Dairy Sci 2019; 102:5219-5229. [PMID: 31056333 DOI: 10.3168/jds.2018-15561] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2018] [Accepted: 03/03/2019] [Indexed: 11/19/2022]
Abstract
Information about genetic parameters is population specific and it is crucial for designing animal breeding programs and predicting response to selection. This study was carried out to estimate the genetic parameters for 23 body conformation traits of 45,517 Chinese Holstein reared in Eastern China from 1995 to 2017 with the Bayesian inference method using a linear animal mixed model. The methods to integrate these traits included (1) using the composite index from the Dairy Association of China and (2) applying principal component analysis and factor analysis to explore the relationship between the conformation traits. Estimates of heritability using the composite index were low (0.04; feet and legs) to moderate (0.23; body capacity). Strong genetic correlations were observed between the individual body conformation traits. Both principal components (1 to 7; eigenvalues ≥ 1) and latent factors (1 to 7; eigenvalues ≥ 1) explained 60.37% of total variability. Principal component 1 and factor 1 accounted for the traits that are usually associated with milk production. Moderate to low heritability were estimated through multi-trait analysis for principal components (from 0.07 to 0.21) and latent factors (from 0.07 to 0.23). Genetic correlations among the 2 multivariate techniques are typically lower compared with the one existing among the measured traits. Results from these analyses suggest the possibility of using both principal component analysis and factor analysis in morphological evaluation, simplifying the information given by the body conformation traits into new variables that could be useful for the genetic improvement of the Chinese Holstein population. This information could also be used to avoid analyzing large number of correlated traits, thereby improving precision and reducing computation burdens to analyze large and complex data.
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Affiliation(s)
- B S Olasege
- Department of Animal Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, PR China
| | - S Zhang
- Department of Animal Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, PR China
| | - Q Zhao
- Department of Animal Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, PR China
| | - D Liu
- Department of Animal Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, PR China
| | - H Sun
- Department of Animal Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, PR China
| | - Q Wang
- Department of Animal Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, PR China; Shanghai Key Laboratory of Veterinary Biotechnology, Shanghai 200240, PR China
| | - P Ma
- Department of Animal Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, PR China.
| | - Y Pan
- Department of Animal Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, PR China; Shanghai Key Laboratory of Veterinary Biotechnology, Shanghai 200240, PR China.
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Gibson K, Dechow C. Genetic parameters for yield, fitness, and type traits in US Brown Swiss dairy cattle. J Dairy Sci 2018; 101:1251-1257. [DOI: 10.3168/jds.2017-13041] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2017] [Accepted: 10/02/2017] [Indexed: 11/19/2022]
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14
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Mesquita NF, Maculan R, Maciel LFS, Alves N, DE Carvalho RR, Moreira GM, DE Souza JC. Vulvar width and rima length as predictors of the ovarian follicular reserve in bovine females. J Reprod Dev 2016; 62:587-590. [PMID: 27545816 PMCID: PMC5177976 DOI: 10.1262/jrd.2016-059] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
The aim of this study was to investigate possible relationships between morphometric characteristics of the bovine reproductive tract and measures of fertility, such as antral follicle counts (AFCs) and the number and quality of recovered cumulus oophorus complexes (COCs). First, the genital tracts of 360 abattoir Zebu/Holstein crossbred cows were studied. Rima vulvae length (RL), vulvar width (VW), ovarian size, pelvic fat, number of aspirated COCs, and AFCs were recorded. An index of COC quality (CQI) was established, which weighed overall gamete quality based on the IETS classification. Second, the same external measurements and AFCs (by ultrasound) were analyzed in live Tabapuã (Zebu) cows (n = 48). Relative RL and vulvar width were defined as the original measurements divided by the body weight of each cow for statistical analyses. In abattoir tracts, the AFC was smaller (P < 0.05) in animals with large VW (34.88 ± 3.50) than in animals with small (45.71 ± 2.57) and intermediate (42.25 ± 2.45) VW. The CQI was higher (P < 0.05) when the pelvic fat score was intermediate (3.22 ± 0.06) than that in lean (2.99 ± 0.08) and obese (2.90 ± 0.12) animals. The CQI was higher (P < 0.05) in the intermediate ovary group (3.19 ± 0.08) than in the small (2.96 ± 0.08) and large (2.95 ± 0.09) ovary groups. In live cows, the AFC was higher (P = 0.035) in females with large relative rima length than in those with small relative rima length (18.96 ± 1.97 and 14.76 ± 1.51, respectively). Similarly, AFC was greater (P = 0.0001) in females with large relative VW than in those with small relative VW (20.08 ± 1.36 and 11.16 ± 1.60, respectively). In conclusion, larger external genitalia relative to body size were good predictors of the ovarian follicular reserve in live animals.
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Affiliation(s)
- Nelson Fijamo Mesquita
- Division of Agriculture, Polytechnic Institute of Gaza, Polytechnic Campus, District of Chókwè, Mozambique
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Frigo E, Samorè AB, Vicario D, Bagnato A, Pedron O. Heritabilities and Genetic Correlations of Body Condition Score and Muscularity with Productive Traits and their Trend Functions in Italian Simmental Cattle. ITALIAN JOURNAL OF ANIMAL SCIENCE 2016. [DOI: 10.4081/ijas.2013.e40] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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16
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Manzanilla-Pech C, Veerkamp R, Tempelman R, van Pelt M, Weigel K, VandeHaar M, Lawlor T, Spurlock D, Armentano L, Staples C, Hanigan M, De Haas Y. Genetic parameters between feed-intake-related traits and conformation in 2 separate dairy populations—the Netherlands and United States. J Dairy Sci 2016; 99:443-57. [DOI: 10.3168/jds.2015-9727] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2015] [Accepted: 09/15/2015] [Indexed: 12/14/2022]
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18
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Cassandro M, Battagin M, Penasa M, De Marchi M. Short communication: Genetic relationships of milk coagulation properties with body condition score and linear type traits in Holstein-Friesian cows. J Dairy Sci 2015; 98:685-91. [DOI: 10.3168/jds.2014-8153] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2014] [Accepted: 10/08/2014] [Indexed: 11/19/2022]
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Duitama L, Farah M, Utsunomiya A, Ono R, Pires M, Fonseca R. Uso de modelos lineares mistos na avaliação genética de escores visuais: estudo de simulação. ARQ BRAS MED VET ZOO 2014. [DOI: 10.1590/1678-6351] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
Objetivou-se avaliar a aplicação da metodologia de modelos lineares mistos em características de escores visuais por meio de simulação, considerando-se duas estruturas populacionais (com e sem seleção), dois níveis de herdabilidade (0,1 e 0,4) e quatro níveis de conectabilidade (8, 20, 38 e 60%). As populações com e sem seleção estavam constituídas por 6660 e 3360 animais, respectivamente, dos quais os últimos 2460 animais tinham fenótipo para o escore visual. Assumiu-se uma variável contínua adjacente ao escore visual, a partir da qual foram definidos os intervalos correspondentes a cada categoria de escore visual. O processo de simulação foi feito por meio do software R, e a estimação de parâmetros e predição de valores genéticos pelo software Wombat, sob modelo animal, considerando-se modelos com e sem efeitos fixos. Os critérios de avaliação foram: o erro quadrático médio (EQM) para a herdabilidade e as correlações de Spearman entre os valores genéticos verdadeiros e preditos. As estimativas da herdabilidade apresentaram-se próximas do valor verdadeiro nos cenários sem seleção (0,084-0,101 e 0,367-0,389), no entanto este resultado não ocorreu quando houve seleção, pois a herdabilidade apresentou-se subestimada (0,032 e 0,278). As correlações apresentaram-se maiores nos cenários sem seleção e com herdabilidade de 0,4 (0,86-0,89). Em todos os cenários simulados, a inclusão do efeito fixo no modelo melhorou as estimativas de herdabilidade e as correlações entre os valores genéticos verdadeiros e preditos. O nível de conectabilidade afetou a correção dos efeitos fixos feita pela atribuição dos escores. Em conclusão, a metodologia dos modelos lineares mistos pode ser utilizada na estimação de parâmetros e predição de valores genéticos de escores visuais em populações sem seleção, entretanto não se apresenta adequada em populações sob seleção.
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Affiliation(s)
| | | | | | - R.K. Ono
- Universidade Estadual Paulista, Brazil
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Profile and genetic parameters of dairy cattle locomotion score and lameness across lactation. Animal 2013; 8:20-7. [PMID: 24153101 DOI: 10.1017/s1751731113001717] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Abstract
This study investigated the profile of locomotion score and lameness before the first calving and throughout the first (n=237) and second (n=66) lactation of 303 Holstein cows raised on a commercial farm. Weekly heritability estimates of locomotion score and lameness, and their genetic and phenotypic correlations with milk yield, body condition score, BW and reproduction traits were derived. Daughter future locomotion score and lameness predictions from their sires��� breeding values for conformation traits were also calculated. First-lactation cows were monitored weekly from 6 weeks before calving to the end of lactation. Second-lactation cows were monitored weekly throughout lactation. Cows were locomotion scored on a scale from one (sound) to five (severely lame); a score greater than or equal to two defined presence of lameness. Cows��� weekly body condition score and BW was also recorded. These records were matched to corresponding milk yield records, where the latter were 7-day averages on the week of inspection. The total number of repeated records amounted to 12 221. Data were also matched to the farm���s reproduction database, from which five traits were derived. Statistical analyses were based on uni- and bivariate random regression models. The profile analysis showed that locomotion and lameness problems in first lactation were fewer before and immediately after calving, and increased as lactation progressed. The profile of the two traits remained relatively constant across the second lactation. Highest heritability estimates were observed in the weeks before first calving (0.66 for locomotion score and 0.54 for lameness). Statistically significant genetic correlations were found for first lactation weekly locomotion score and lameness with body condition score, ranging from ���0.31 to ���0.65 and from ���0.44 to ���0.76, respectively, suggesting that cows genetically pre-disposed for high body condition score have fewer locomotion and lameness issues. Negative (favourable) phenotypic correlations between first lactation weekly locomotion score/lameness and milk yield averaged ���0.27 and ���0.17, respectively, and were attributed to management factors. Also a phenotypic correlation between lameness and conception rate of ���0.19 indicated that lame cows were associated with lower success at conceiving. First-lactation daughter locomotion score and/or lameness predictions from sires��� estimated breeding values for conformation traits revealed a significant linear effect of rear leg side view, rear leg rear view, overall conformation, body condition score and locomotion, and a quadratic effect of foot angle.
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Tiezzi F, Maltecca C, Cecchinato A, Penasa M, Bittante G. Thin and fat cows, and the nonlinear genetic relationship between body condition score and fertility. J Dairy Sci 2013; 96:6730-41. [DOI: 10.3168/jds.2013-6863] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2013] [Accepted: 06/18/2013] [Indexed: 11/19/2022]
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Liu S, Yi J, Yang L. Genetic parameters estimates for locomotion score, body condition score and final type score of Holstein cattle in southern China. JOURNAL OF APPLIED ANIMAL RESEARCH 2013. [DOI: 10.1080/09712119.2012.739090] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Battagin M, Sartori C, Biffani S, Penasa M, Cassandro M. Genetic parameters for body condition score, locomotion, angularity, and production traits in Italian Holstein cattle. J Dairy Sci 2013; 96:5344-51. [PMID: 23726426 DOI: 10.3168/jds.2012-6352] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2012] [Accepted: 04/15/2013] [Indexed: 11/19/2022]
Abstract
The objectives of this research were to estimate genetic parameters for body condition score (BCS) and locomotion (LOC), and to assess their relationships with angularity (ANG), milk yield, fat and protein content, and fat to protein content ratio (F:P) in the Italian Holstein Friesian breed. The Italian Holstein Friesian Cattle Breeders Association collects type trait data once on all registered first lactation cows. Body condition score and LOC were introduced in the conformation scoring system in 2007 and 2009, respectively. Variance (and covariance) components among traits were estimated with a Bayesian approach via a Gibbs sampling algorithm and an animal model. Heritability estimates were 0.114 and 0.049 for BCS and LOC, respectively. The genetic correlation between BCS and LOC was weak (-0.084) and not different from zero; therefore, the traits seem to be genetically independent, but further investigation on possible departures from linearity of this relationship is needed. Angularity was strongly negatively correlated with BCS (-0.612), and strongly positively correlated with LOC (0.650). The genetic relationship of milk yield with BCS was moderately negative (-0.386), and was moderately positive (0.238) with LOC. These results indicate that high-producing cows tend to be thinner and tend to have better locomotion than low-producing cows. The genetic correlation of BCS with fat content (0.094) and F:P (-0.014) was very weak and not different from zero, and with protein content (0.173) was weak but different from zero. Locomotion was weakly correlated with fat content (0.071), protein content (0.028), and F:P (0.074), and correlations were not different from zero. Phenotypic correlations were generally weaker than their genetic counterparts, ranging from -0.241 (BCS with ANG) to 0.245 (LOC with ANG). Before including BCS and LOC in the selection index of the Italian Holstein breed, the correlations with other traits currently used to improve type and functionality of animals need to be investigated.
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Affiliation(s)
- M Battagin
- Department of Agronomy, Food, Natural Resources, Animals and Environment, University of Padova, Legnaro, Italy.
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Weber A, Stamer E, Junge W, Thaller G. Genetic parameters for lameness and claw and leg diseases in dairy cows. J Dairy Sci 2013; 96:3310-8. [DOI: 10.3168/jds.2012-6261] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2012] [Accepted: 01/05/2013] [Indexed: 11/19/2022]
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Wright JR, Wiggans GR, Muenzenberger CJ, Neitzel RR. Short communication: genetic evaluation of mobility for Brown Swiss dairy cattle. J Dairy Sci 2013; 96:2657-2660. [PMID: 23403194 DOI: 10.3168/jds.2012-6193] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2012] [Accepted: 12/11/2012] [Indexed: 11/19/2022]
Abstract
Genetic parameters were estimated for mobility score and 16 linear type traits of Brown Swiss dairy cattle. Mobility is an overall assessment trait that measures a cow's ability to move, as well as the structure of her feet, pasterns, and legs. Scores from 50 to 99 were assigned by appraisers for the Brown Swiss Cattle Breeders' Association of the USA beginning in June 2007. Only scores made before 69 mo of age were used. After edits, 32,710 records were available for 19,472 cows in 819 herds. The model included fixed effects for the interaction of herd and appraisal date (2,109 groups), appraisal age within parity (46 groups), and lactation stage within parity (21 groups), as well as random effects for animal, permanent environment, and residual error. A multi-trait analysis was conducted using canonical transformation, multiple diagonalization, and a decelerated expectation-maximization REML algorithm. Heritability was estimated to be 0.21 for mobility and ranged from 0.06 to 0.37 for the other 16 type traits. The traits with the highest genetic correlation with mobility were final score (0.78), rear legs (rear view; 0.74), rear udder width (0.52), and foot angle (0.51). Predicted transmitting ability (PTA) for mobility was calculated using the Brown Swiss multi-trait type evaluation system but included only appraisals for which all traits had been scored. For the 1,868 bulls evaluated, PTA for mobility ranged from 1.6 to -1.8 with a standard deviation of 0.5 and was most highly correlated with PTA for final score (0.88), rear legs (rear view; 0.77), rear udder height (0.70), and rear udder width (0.69), as expected from the trait correlations. When matched with official US national evaluations from August 2011, PTA mobility had moderately high correlations with PTA for milk, fat, and protein yields, as well as productive life (0.31-0.41). The mobility trait may provide a more accurate assessment of the structural soundness required for longevity than does the feet-legs composite.
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Affiliation(s)
- J R Wright
- Animal Improvement Programs Laboratory, Agricultural Research Service, USDA, Beltsville, MD 20705-2350.
| | - G R Wiggans
- Animal Improvement Programs Laboratory, Agricultural Research Service, USDA, Beltsville, MD 20705-2350
| | - C J Muenzenberger
- Brown Swiss Cattle Breeders' Association of the USA, Beloit, WI 53511-5456
| | - R R Neitzel
- Brown Swiss Cattle Breeders' Association of the USA, Beloit, WI 53511-5456
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Oberbauer AM, Berry SL, Belanger JM, McGoldrick RM, Pinos-Rodriquez JM, Famula TR. Determining the heritable component of dairy cattle foot lesions. J Dairy Sci 2012; 96:605-13. [PMID: 23063151 DOI: 10.3168/jds.2012-5485] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2012] [Accepted: 09/07/2012] [Indexed: 01/19/2023]
Abstract
Lameness and hoof health affect dairy cows as an animal welfare issue, in decreased milk production, and in premature culling. Selection schemes for dairy cattle focus on sire contribution to milk production, with little consideration of the cow's physical structure or disease probability. On 3 commercial California dairies, 6 phenotypic binary hoof traits that contribute to lameness were recorded: white line disease, sole ulcer, other claw horn lesions, foot rot (interdigital phlegmon), foot warts (digital dermatitis), and other lesions. Monthly lactation records were collected from December 2006 to April 2009 with weekly observations of hoof lesions for lame and dry cows. In addition to hoof lesion information, data on cows (n=5,043) included parentage, birth date, freshening date, lactation number, and date of lameness diagnosis. The prevalence of hoof lesions ranged from a low of 2.2% (foot rot) to a high of 17.1% (foot warts). The farm environment increased the odds ratio depending upon the lesion. Lameness was more common in early lactation and as lactation number increased. Using a threshold model, heritabilities and repeatabilities were estimated for each binary trait. The heritability for risk varied by lesion, with the higher estimates being 0.40 (95% confidence interval: 0.20-0.67) for digital dermatitis and 0.30 (95% confidence interval: 0.08-0.63) for sole ulcer. Including terms to account for cow productivity on either a 305-d mature-equivalent basis or a per-lactation basis had minimal effect on the heritability estimates, suggesting that selection for hoof health is not correlated with response to selection for greater milk production and that improvement could be made for both traits. The genetic component lends support for further genetic studies to identify loci contributing to some of the lesion phenotypes such as foot warts or sole ulcers, 2 of the top 3 causes of lameness in dairy cattle.
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Affiliation(s)
- A M Oberbauer
- Department of Animal Science, One Shields Ave., University of California, Davis 95616, USA.
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Tiezzi F, Maltecca C, Cecchinato A, Penasa M, Bittante G. Genetic parameters for fertility of dairy heifers and cows at different parities and relationships with production traits in first lactation. J Dairy Sci 2012; 95:7355-62. [PMID: 23063160 DOI: 10.3168/jds.2012-5775] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2012] [Accepted: 08/30/2012] [Indexed: 11/19/2022]
Abstract
The objectives of this study were to estimate genetic parameters for fertility of Brown Swiss cattle, considering reproductive measures in different parities as different traits, and to estimate relationships between production traits of first lactation and fertility of heifers and first-parity and second-parity cows. Reproductive indicators were interval from parturition to first service, interval from first service to conception, interval from parturition to conception, number of inseminations to conception, conception rate at first service, and nonreturn rate at 56 d after first service. Production traits were peak milk yield (pMY), lactation milk yield, and lactation length (LL). Data included 37,546 records on heifers, and 24,098 and 15,653 records on first- and second-parity cows, respectively. Cows were reared in 2,035 herds, calved from 1999 to 2007, and were progeny of 527 AI bulls. Gibbs sampling was implemented to obtain (co)variance components using both univariate and bivariate threshold and censored linear sire models. Estimates of heritability for reproductive traits in heifers (0.016 to 0.026) were lower than those in first-parity (0.017 to 0.142) and second-parity (0.026 to 0.115) cows. Genetic correlations for fertility in first- and second-parity cows were very high (>0.920), whereas those between heifers and lactating cows were moderate (0.348 to 0.709). The latter result indicates that fertility in heifers is a different trait than fertility in lactating cows, and hence it cannot be used as robust indicator of cow fertility. Heifer fertility was not related to production traits in first lactation (genetic correlations between -0.215 and 0.251). Peak milk yield exerted a moderate and unfavorable effect on the interval from parturition to first service (genetic correlations of 0.414 and 0.353 after first and second calving, respectively), and a low and unfavorable effect on other fertility traits (genetic correlations between -0.281 and 0.295). Infertility after first calving caused a strong elongation of the lactation, and LL was negatively correlated with fertility of cows after second calving, so that LL can itself be regarded as a measure of fertility. Lactation milk yield depends on both pMY and LL, and, as such, is a cause and consequence of (in)fertility.
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Affiliation(s)
- F Tiezzi
- Department of Agronomy, Food, Natural Resources, Animals and Environment, University of Padova, Legnaro (PD), Italy
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