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Mulhall SA, Sleator RD, Evans RD, Berry DP, Twomey AJ. Impact on prime animal beef merit from breeding solely for lighter dairy cows. J Dairy Sci 2024:S0022-0302(24)00851-8. [PMID: 38825095 DOI: 10.3168/jds.2023-24633] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2023] [Accepted: 04/17/2024] [Indexed: 06/04/2024]
Abstract
As the proportion of prime carcasses originating from dairy herds increases, the focus is shifting to the beef merit of the progeny from dairy herds. Several dairy cow total merit indexes include a negative weight on measures of cow size. However, there is a lack of knowledge on the impact of genetic selection, solely for lighter or smaller-sized dairy cows, on the beef performance of their progeny. Therefore, the objective of this study was to quantify the genetic correlations among cow size traits (i.e., cow body weight (BW), cow carcass weight (CW)), cow body condition score (BCS), cow carcass conformation (CC), and cow carcass fat cover (CF), as well as the correlations between these cow traits and a series of beef performance slaughter-related traits (i.e., CW, CC, CF, and age at slaughter (AS)) in their progeny. After data editing, there were 52,950 cow BW and BCS records, along with 57,509 cow carcass traits (i.e., CW, CC, and CF); carcass records from 346,350 prime animals along with AS records from 316,073 prime animals were also used. Heritability estimates ranged from moderate to high (0.18 to 0.62) for all cow and prime animal traits. The same carcass trait in cows and prime animals were strongly genetically correlated with each other (0.76 to 0.85), implying that they are influenced by very similar genomic variants. Selecting exclusively for cows with higher BCS (i.e., fatter) will, on average, produce more conformed prime animals carcasses, owing to a moderate genetic correlation (0.30) between both traits. Genetic correlations revealed that selecting exclusively for lighter BW or CW cows will, on average, result in lighter prime animal carcasses of poor CC, while also delaying slaughter age. Nonetheless, selective breeding through total merit indexes should be successful in breeding for smaller dairy cows, and desirable prime animal carcass traits concurrently, because of the non-unity genetic correlations between the cow and prime animal traits; this will help to achieve a more ethical, environmentally sustainable, and economically viable dairy-beef industry.
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Affiliation(s)
- S A Mulhall
- Animal and Grassland Research and Innovation Centre, Teagasc, Moorepark, Fermoy, Co. Cork, P61 C996, Ireland; Department of Biological Sciences, Munster Technological University, Bishopstown Campus, Cork, T12 VN56, Ireland
| | - R D Sleator
- Department of Biological Sciences, Munster Technological University, Bishopstown Campus, Cork, T12 VN56, Ireland
| | - R D Evans
- Department of Biological Sciences, Munster Technological University, Bishopstown Campus, Cork, T12 VN56, Ireland
| | - D P Berry
- Animal and Grassland Research and Innovation Centre, Teagasc, Moorepark, Fermoy, Co. Cork, P61 C996, Ireland.
| | - A J Twomey
- Animal and Grassland Research and Innovation Centre, Teagasc, Moorepark, Fermoy, Co. Cork, P61 C996, Ireland; Irish Cattle Breeding Federation, Link Rd, Ballincollig, Co. Cork, P31 D452, Ireland
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Zhang Z, Yang J, Yao Y, Wang D, Lu X, Yang Z. Body conformation traits in early-lactation associated with clinical mastitis and lameness in lactating Chinese holstein cows. BMC Vet Res 2024; 20:85. [PMID: 38459506 PMCID: PMC10921625 DOI: 10.1186/s12917-024-03931-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2023] [Accepted: 02/11/2024] [Indexed: 03/10/2024] Open
Abstract
BACKGROUND Comprehending the correlation between body conformation traits of cows at the early stages of lactation and prevalent lactation diseases might facilitate the execution of selection and feeding strategies that prioritize cow health. This study aimed to evaluate the impact of body conformation traits on the incidence of clinical mastitis and lameness in Chinese Holstein cows. From a pasture herd of 1472 early lactating Chinese Holstein cows, we evaluated 20 body conformation traits. During lactation, this pasture herd was visited weekly to gather clinical mastitis and lameness data. A nine-point scale was used to determine the conformation traits of cows to clarify their linear characters, including frame capacity, rump (RU), feet and leg (FL), mammary system (MS), and dairy character. A longitudinal binary disease (0 = healthy; 1 = diseased) data structure was created by allocating disease records to adjacent official test dates. The impact of body conformation traits on the risk of developing diseases (clinical mastitis and lameness) was analyzed using the logistic regression models. RESULTS Compared to cows with low total scores (75-79 points), those with high total scores (80-85 points) of body conformation traits had a significantly lower risk of mastitis (P < 0.001). The disease status (0 or 1: binary variable) of clinical mastitis in lactating cows was significantly impacted negatively by age (P < 0.05). The fore udder attachment (FUA), angularity, rear attachment height (RAH), and rear teat placement (RTP) were all significantly associated with clinical mastitis during lactation (P < 0.05). The rear leg-rear view (RLRV) was significantly correlated with correlated considerably (P < 0.05) with lameness during lactation. An ideal score of four points on the lameness risk dimension of the RLRV may indicate a low risk of lameness. Since the risk of mastitis decreased as this trait score increased, the RTP may be an ideal marker for mastitis risk. CONCLUSIONS According to the study, clinical mastitis and lameness risks in cows can be estimated using their body conformation traits. Cows with more centrally located rear teats have a lower risk of mastitis. These results may help dairy farmers identify cows at high risk of disease early in lactation and aid in breeding for disease resistance in cows.
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Affiliation(s)
- Zhipeng Zhang
- College of Animal Science and Technology, Yangzhou University, Yangzhou, 225009, P. R. China
| | - Jiayu Yang
- College of Animal Science and Technology, Yangzhou University, Yangzhou, 225009, P. R. China
| | - Yiyang Yao
- College of Animal Science and Technology, Yangzhou University, Yangzhou, 225009, P. R. China
| | - Dasheng Wang
- College of Animal Science and Technology, Yangzhou University, Yangzhou, 225009, P. R. China
| | - Xubin Lu
- College of Animal Science and Technology, Yangzhou University, Yangzhou, 225009, P. R. China
| | - Zhangping Yang
- College of Animal Science and Technology, Yangzhou University, Yangzhou, 225009, P. R. China.
- Joint International Research Laboratory of Agriculture and Agri-product Safety of Ministry of Education of China, Yangzhou University, Yangzhou, 225009, P. R. China.
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Genetical analysis of mastitis and reproductive traits in first-parity Holstein cows using standard and structural equation modelling. Animal 2023; 17:100777. [PMID: 37043934 DOI: 10.1016/j.animal.2023.100777] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2022] [Revised: 03/03/2023] [Accepted: 03/07/2023] [Indexed: 03/17/2023] Open
Abstract
The present study aimed to investigate the causal relationships between clinical mastitis and some reproductive traits, including success at first insemination (SFI), the number of inseminations to pregnancy (INS), the interval from calving to first service (CTFS), first and last service interval (IFL), and open days (OD) in first-parity Holstein cows. For this purpose, the records of 58 281 first parity Holstein cows were analysed. These data sets were collected from 17 large dairy herds from 2008 to 2017. Recursive Mixed Models (RMMs) were applied and compared with the estimations under Standard Mixed Models. Then, one trivariate and three bivariate Gaussian-threshold models were used for the analyses. Recursive models were applied, considering that clinical mastitis can influence fertility traits. Mastitis is considered a covariate for the reproductive traits to determine their causal relationship. The results of this study indicated that causal effects of mastitis on SFI (on the observed scale, %), CTFS, IFL, OD, and INS were -5.7%, 3.3 days, 12.27 days, seven days, and 0.26 services, respectively. The estimated structural coefficients of the recursive models in the first parity imply that mastitis significantly lengthened the fertility interval and decreased the conception rate. In addition, genetic, residual, and phenotypic correlations between mastitis and the reproductive traits under both models were statistically significant. Results of genetic correlations between mastitis and fertility traits suggest that more incidence of mastitis during lactation is related to the delays in the heat show and pregnancy rate after insemination. In summary, considering the causal effects under RMMs may be advantageous to comprehend complicated relationships between complex traits better.
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Estimation of Genetic Parameters for Conformation Traits and Milk Production Traits in Chinese Holsteins. Animals (Basel) 2022; 13:ani13010100. [PMID: 36611708 PMCID: PMC9817994 DOI: 10.3390/ani13010100] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2022] [Revised: 12/11/2022] [Accepted: 12/16/2022] [Indexed: 12/29/2022] Open
Abstract
The objective of this study was to explore the genetic parameters of conformation traits and milk production traits in Chinese Holstein cattle and to provide a reference for dairy cattle breeding. We collected the phenotypic data of 23 conformation traits and five milk production traits of Chinese Holsteins and used animal models to estimate the genetic parameters of conformation traits and milk production traits. The estimated heritability of conformation traits ranged from 0.11 (angularity) to 0.37 (heel depth) and the genetic correlation between conformation traits ranged from -0.73 (bone quality and rear leg-rear view) to 0.76 (chest width and loin strength). The heritability of milk production traits ranged from 0.23 (somatic cell score) to 0.50 (305-d milk yield). The estimated values of genetic correlation between conformation traits and milk production traits ranged from -0.56 (heel depth and 305-d milk yield) to 0.57 (udder texture and milk fat percentage). There was a positive genetic correlation between most conformation traits and milk fat percentage, but a weak negative genetic correlation with milk yield. Strengthening the moderately and highly heritable milk production and conformation traits, especially the selection of rear udder traits and body shape total score, will be beneficial in improving the performance of dairy cows.
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Nkadimeng M, Van Marle-Köster E, Nengovhela NB, Ramukhithi FV, Mphaphathi ML, Rust JM, Makgahlela ML. Assessing Reproductive Performance to Establish Benchmarks for Small-Holder Beef Cattle Herds in South Africa. Animals (Basel) 2022; 12:ani12213003. [PMID: 36359127 PMCID: PMC9657001 DOI: 10.3390/ani12213003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2022] [Revised: 10/21/2022] [Accepted: 10/25/2022] [Indexed: 11/06/2022] Open
Abstract
Smallholder beef cattle farms in South Africa have had low reproductive performance, which has been associated with management practices. Considering current farm management practices, a multi-stage selection study was conducted to assess reproductive performance as defined by pregnancy rate, fetal and calf losses, calving interval and days open to benchmark reproductive performance. Data were collected twice, in autumn (March−May) for pregnancy diagnosis and in spring (September−November) for monitoring of confirmed pregnancies. Overall, 3694 cow records from 40 smallholder herds were collected during 2018 and 2019 breeding seasons from five provinces. The preferred 25th quartile described target performance and GLIMMIX procedure determined associations between management practices and performance. Smallholder farms on average recorded 50% pregnancy rate and 12% fetal and calf losses with 304 and 608 days open and calving interval, respectively. The derived target benchmarks for pregnancy rate, fetal and calf losses, days open and calving intervals in smallholder farms were 54%, 1.4%, 152 and 425 days, respectively. Reproductive performance was associated with no knowledge of body condition scoring before breeding, culling of old and non-productive cows, record keeping and low bull to cow ratio (p < 0.05). The performance benchmarks implied that industry averages may be improved if sustainable management services are provided through extension and advisory services.
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Affiliation(s)
- Marble Nkadimeng
- Department of Animal and Wildlife Sciences, University of Pretoria, Hatfield, Pretoria 0002, South Africa
- Agricultural Research Council, Department of Germplasm Conservation and Reproductive Biotechnologies, Private Bag X2, Irene, Tshwane 0062, South Africa
- Correspondence:
| | - Este Van Marle-Köster
- Department of Animal and Wildlife Sciences, University of Pretoria, Hatfield, Pretoria 0002, South Africa
| | - Nkhanedzeni Baldwin Nengovhela
- Department of Agriculture, Land Reform and Rural Development, Delpen Building, Corner Annie Botha and Union Street, Riviera, Pretoria 0001, South Africa
- Department of Agriculture and Animal Health, University of South Africa, Florida 1710, South Africa
| | - Fhulufhelo Vincent Ramukhithi
- Agricultural Research Council, Department of Germplasm Conservation and Reproductive Biotechnologies, Private Bag X2, Irene, Tshwane 0062, South Africa
| | - Masindi Lotus Mphaphathi
- Agricultural Research Council, Department of Germplasm Conservation and Reproductive Biotechnologies, Private Bag X2, Irene, Tshwane 0062, South Africa
| | | | - Mahlako Linah Makgahlela
- Agricultural Research Council, Department of Germplasm Conservation and Reproductive Biotechnologies, Private Bag X2, Irene, Tshwane 0062, South Africa
- Department of Animal, Wildlife and Grassland Sciences, University of the Free State, Bloemfontein 9301, South Africa
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Boosting the potential of cattle breeding using molecular biology, genetics, and bioinformatics approaches – a review. ACTA VET BRNO 2021. [DOI: 10.2754/avb202190020145] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Cattle are among the most important farm animals that underwent an intense selection with the aim to increase milk production and to improve growth and meat properties, meanwhile reducing the generation interval allowing for a faster herd turnover. Recently, a shift from traditional breeding methods to breeding based on genetic testing has been observed. In this perspective, we review the techniques of molecular biology, genetics, and bioinformatics that are expected to further boost the agricultural potential of cattle. We discuss embryo selection based on next-generation and Nanopore sequencing and in vitro embryo production, boosting the potential of genetically superior animals. Gene editing of embryos could further speed up the selection process, essentially introducing a change in a single generation. Lastly, we discuss the host-microbiome co-evolution and adaptation. For example, cattle already adapted to low-quality low-cost fodder could be bred to achieve desired properties for the beef and dairy industry. The challenge of breeding and genetic editing is to accompany the selection on desired consumer-oriented traits with the push for sustainability and the adaptation to a changing climate while remaining economically viable. We propose that we are yet to see the limits of what is possible to achieve with modern technology for the cattle of the future; the ultimate goal will be to produce and maintain genetically elite individuals that can sustain the growing demands on the production.
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7
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Gore D, Okeno T, Muasya T, Mburu J. Improved response to selection in dairy goat breeding programme through reproductive technology and genomic selection in the tropics. Small Rumin Res 2021. [DOI: 10.1016/j.smallrumres.2021.106397] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Ask-Gullstrand P, Strandberg E, Båge R, Christensen JM, Berglund B. Genetic parameters for reproductive losses estimated from in-line milk progesterone profiles in Swedish dairy cattle. J Dairy Sci 2020; 104:3231-3239. [PMID: 33358783 DOI: 10.3168/jds.2020-19385] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2020] [Accepted: 10/02/2020] [Indexed: 12/11/2022]
Abstract
This study assessed the extent of reproductive losses and associated genetic parameters in dairy cattle, using in-line milk progesterone records for 14 Swedish herds collected by DeLaval's Herd Navigator. A total of 330,071 progesterone samples were linked to 10,219 inseminations (AI) from 5,238 lactations in 1,457 Swedish Red and 1,847 Swedish Holstein cows. Pregnancy loss traits were defined as early embryonic loss (1-24 d after AI), late embryonic loss (25-41 d after AI), fetal loss (42 d after AI until calving), and total pregnancy loss (from d 1 after AI until calving). The following classical fertility traits were also analyzed: interval from calving to first service, interval from calving to last service, interval between first and last service, calving interval, and number of inseminations per service period. Least squares means with standard error (LSM ± SE), heritabilities, and genetic correlations were estimated in a mixed linear model. Fixed effects included breed, parity (1, 2, ≥3), estrus cycle number when the AI took place, and a linear regression on 305-d milk yield. Herd by year and season of AI, cow, and permanent environmental effect were considered random effects. Extensive (approximately 45%) early embryonic loss was found, but with no difference between the breeds. Swedish Red was superior to Swedish Holstein in the remaining pregnancy loss traits with, respectively: late embryonic loss of 6.1 ± 1.2% compared with 13.3 ± 1.1%, fetal loss of 7.0 ± 1.2% compared with 12.3 ± 1.2%, and total pregnancy loss of 54.4 ± 1.4% compared with 60.6 ± 1.4%. Swedish Red also had shorter calving to first service and calving to last service than Swedish Holstein. Estimated heritability was 0.03, 0.06, and 0.02 for early embryonic, late embryonic, and total pregnancy loss, respectively. Milk yield was moderately genetically correlated with both early and late embryonic loss (0.52 and 0.39, respectively). The pregnancy loss traits were also correlated with several classical fertility traits (-0.46 to 0.92). In conclusion, Swedish Red cows had lower reproductive loss during late embryonic stage, fetal stage, and in total, and better fertility than Swedish Holstein cows. The heritability estimates for pregnancy loss traits were of the same order of magnitude as previously reported for classical fertility traits. These findings could be valuable in work to determine genetic variation in reproductive loss and its potential usefulness as an alternative fertility trait to be considered in genetic or genomic evaluations.
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Affiliation(s)
- P Ask-Gullstrand
- Department of Animal Breeding and Genetics, Swedish University of Agricultural Sciences, PO Box 7023, SE-750 07 Uppsala, Sweden.
| | - E Strandberg
- Department of Animal Breeding and Genetics, Swedish University of Agricultural Sciences, PO Box 7023, SE-750 07 Uppsala, Sweden
| | - R Båge
- Department of Clinical Sciences, Swedish University of Agricultural Sciences, PO Box 7054, SE-750 07 Uppsala, Sweden; Växa Sverige, PO Box 30204, SE-104 25 Stockholm, Sweden
| | | | - B Berglund
- Department of Animal Breeding and Genetics, Swedish University of Agricultural Sciences, PO Box 7023, SE-750 07 Uppsala, Sweden
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9
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Chebel RC, Veronese A. Associations between genomic merit for daughter pregnancy rate of Holstein cows and metabolites postpartum and estrus characteristics. J Dairy Sci 2020; 103:10754-10768. [PMID: 32921462 DOI: 10.3168/jds.2020-18207] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2020] [Accepted: 06/23/2020] [Indexed: 11/19/2022]
Abstract
Genetic selection of Holstein cattle in the past 2 decades has seen an increased attention to fertility traits. Our hypotheses were that genomic merit for daughter pregnancy rate (GDPR) is positively associated with metabolic responses, hazard of estrus, and estrus characteristics. Pregnant heifers (n = 821) from one herd that were genotyped within 2 mo of birth (Clarifide, Zoetis, Parsippany, NJ) were fitted with automated monitoring devices (SCR Inc., Netanya, Israel) -21 ± 14 d relative to calving. Estrus characteristics recorded from calving to 62 d postpartum were evaluated. Blood samples were collected weekly from a subsample (n = 499) of cows, from 7 to 28 d postpartum, for determination of insulin-like growth factor-1, glucose, and nonesterified fatty acids. Cows received artificial insemination or embryo transfer following detected estrus and those not detected in estrus were submitted to an ovulation synchronization protocol starting at 75 d in milk. Linear and quadratic associations between GDPR and outcomes were analyzed, but when appropriate, results are presented according to GDPR quartile (Q1 = -1.8 to 0.8; Q2 = 0.9 to 1.7; Q3 = 1.8 to 2.5; Q4 = 2.6 to 5.9) based on the parameter estimates of the multivariable models. Genomic merit for daughter pregnancy rate was positively associated with insulin-like growth factor-1 (Q1 = 24.3 ± 0.2; Q2 = 26.8 ± 0.2; Q3 = 28.2 ± 0.2; Q4 = 30.6 ± 0.3 ng/mL) and glucose (Q1 = 67.0 ± 0.1; Q2 = 69.1 ± 0.2; Q3 = 69.6 ± 0.2; Q4 = 70.8 ± 0.2 mg/dL) concentrations, but GDPR was negatively associated with nonesterified fatty acid concentration (Q1 = 281.2 ± 4.9; Q2 = 262.0 ± 5.9; Q3 = 239.3 ± 5.0; Q4 = 221.6 ± 4.7 μmol/L). A positive association was observed between GDPR and hazard of estrus [adjusted hazard ratio and 95% confidence interval = 1.16 (1.06, 1.28)] and number of estrus events (Q1 = 0.50 ± 0.03; Q2 = 0.62 ± 0.04; Q3 = 0.74 ± 0.05; Q4 = 0.86 ± 0.06) within 62 d postpartum, duration of estrus (Q1 = 14.10 ± 0.04; Q2 = 14.48 ± 0.04; Q3 = 14.67 ± 0.04; Q4 = 14.98 ± 0.04 h), probability of activity peak (0 = no estrus, 100 = maximum activity) ≥86 (Q1 = 0.80 ± 0.03; Q2 = 0.83 ± 0.02; Q3 = 0.83 ± 0.03; Q4 = 0.85 ± 0.2), and probability of heat index ≥86 (Q1 = 0.77 ± 0.04; Q2 = 0.81 ± 0.05; Q3 = 0.83 ± 0.03; Q4 = 0.86 ± 0.03). Conversely, GDPR was negatively associated with rumination nadir at estrus (Q1 = -35.5 ± 0.1; Q2 = -37.0 ± 0.1; Q3 = -38.0 ± 0.1; Q4 = -39.6 ± 0.1 min). We detected a positive association between GDPR and hazard of pregnancy (adjusted hazard ratio = 1.11, 95% confidence interval = 1.03, 1.19). Selection for GDPR may improve the hormonal and metabolic status of cows postpartum, leading to earlier resumption of cyclicity, and may improve detection of estrus in commercial herds because it was positively associated with estrus characteristics.
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Affiliation(s)
- Ricardo C Chebel
- Department of Large Animal Clinical Sciences, University of Florida, Gainesville 32610; Department of Animal Sciences, University of Florida, Gainesville 32608.
| | - Anderson Veronese
- Department of Large Animal Clinical Sciences, University of Florida, Gainesville 32610
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10
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Doyle JL, Berry DP, Veerkamp RF, Carthy TR, Walsh SW, Evans RD, Purfield DC. Genomic Regions Associated With Skeletal Type Traits in Beef and Dairy Cattle Are Common to Regions Associated With Carcass Traits, Feed Intake and Calving Difficulty. Front Genet 2020; 11:20. [PMID: 32117439 PMCID: PMC7010604 DOI: 10.3389/fgene.2020.00020] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2019] [Accepted: 01/07/2020] [Indexed: 12/22/2022] Open
Abstract
Linear type traits describing the skeletal characteristics of an animal are moderately to strongly genetically correlated with a range of other performance traits in cattle including feed intake, reproduction traits and carcass merit; thus, type traits could also provide useful insights into the morphological differences among animals underpinning phenotypic differences in these complex traits. The objective of the present study was to identify genomic regions associated with five subjectively scored skeletal linear traits, to determine if these associated regions are common in multiple beef and dairy breeds, and also to determine if these regions overlap with those proposed elsewhere to be associated with correlated performance traits. Analyses were carried out using linear mixed models on imputed whole genome sequence data separately in 1,444 Angus, 1,129 Hereford, 6,433 Charolais, 8,745 Limousin, 1,698 Simmental, and 4,494 Holstein-Friesian cattle, all scored for the linear type traits. There was, on average, 18 months difference in age at assessment of the beef versus the dairy animals. While the majority of the identified quantitative trait loci (QTL), and thus genes, were both trait-specific and breed-specific, a large-effect pleiotropic QTL on BTA6 containing the NCAPG and LCORL genes was associated with all skeletal traits in the Limousin population and with wither height in the Angus. Other than that, little overlap existed in detected QTLs for the skeletal type traits in the other breeds. Only two QTLs overlapped the beef and dairy breeds; both QTLs were located on BTA5 and were associated with height in both the Angus and the Holstein-Friesian, despite the difference in age at assessment. Several detected QTLs in the present study overlapped with QTLs documented elsewhere that are associated with carcass traits, feed intake, and calving difficulty. While most breeding programs select for the macro-traits like carcass weight, carcass conformation, and feed intake, the higher degree of granularity with selection on the individual linear type traits in a multi-trait index underpinning the macro-level goal traits, presents an opportunity to help resolve genetic antagonisms among morphological traits in the pursuit of the animal with optimum performance metrics.
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Affiliation(s)
- Jennifer L Doyle
- Animal and Grassland Research and Innovation Centre, Moorepark, Teagasc, Fermoy, Ireland.,Department of Science, Waterford Institute of Technology, Waterford, Ireland
| | - Donagh P Berry
- Animal and Grassland Research and Innovation Centre, Moorepark, Teagasc, Fermoy, Ireland
| | - Roel F Veerkamp
- Animal Breeding and Genomics Centre, Wageningen Livestock Research, Wageningen University & Research, Wageningen, Netherlands
| | - Tara R Carthy
- Animal and Grassland Research and Innovation Centre, Moorepark, Teagasc, Fermoy, Ireland
| | - Siobhan W Walsh
- Department of Science, Waterford Institute of Technology, Waterford, Ireland
| | - Ross D Evans
- Animal Breeding and Genomics Centre, Wageningen Livestock Research, Wageningen University & Research, Wageningen, Netherlands.,Irish Cattle Breeding Federation, Bandon, Ireland
| | - Deirdre C Purfield
- Animal and Grassland Research and Innovation Centre, Moorepark, Teagasc, Fermoy, Ireland
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11
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Semen analysis and sperm characteristics of Karan Fries cattle. Anim Reprod Sci 2019; 212:106250. [PMID: 31864497 DOI: 10.1016/j.anireprosci.2019.106250] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2019] [Revised: 10/11/2019] [Accepted: 11/21/2019] [Indexed: 02/04/2023]
Abstract
Karan Fries is an Indian composite breed of cattle with superior milk production with a greater disease resistance than many other cattle. Understanding of the basic sperm and semen characteristics is necessary to develop the artificial insemination and sperm sexing methods. This study was conducted to evaluate the morphological, rheological and biochemical characteristics of Karan Fries (Indian composite breed) bull semen. Semen analysis was conducted using Computer Assisted Sperm Analysis (CASA) and rheological methods. Results from correlation assessments indicated there was a positive correlation among values for sperm velocity variables. Motility of bull sperm movements in a linear path were the important variables evaluated in this study. There was also characterization of the individual spermatozoa using scanning electron microscopy (SEM) and Raman spectroscopy. The sperm head length and width were 8.8 ± 0.8 and 3.9 ± 0.6 μm, respectively, and the approximate flagellum length was 59.4 ± 4.5 μm. There was a difference in the Raman intensity among the individual spermatozoa. Results of this study could be important in designing and developing methods of artificial insemination, cryopreservation of semen and semen sexing.
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12
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Kelly E, McAloon CG, O'Grady L, Duane M, Somers JR, Beltman ME. Cow-level risk factors for reproductive tract disease diagnosed by 2 methods in pasture-grazed dairy cattle in Ireland. J Dairy Sci 2019; 103:737-749. [PMID: 31733853 DOI: 10.3168/jds.2019-17064] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2019] [Accepted: 09/19/2019] [Indexed: 01/03/2023]
Abstract
The cow-side diagnosis of reproductive tract disease (RTD) involves identifying the presence of purulent vaginal discharge (PVD) and ultrasonographic endometritis (UE). The objectives of our study were to obtain prevalence estimates for RTD diagnosed by 2 methods (PVD and UE scoring) and to investigate the risk factors for increased probability of RTD if these methods are used in isolation or in combination. Our retrospective observational cohort study tested the hypothesis that RTD assessed by 2 methods would have similar risk factors, and that those would be mainly cow- and calving-related factors. We analyzed data from 5,049 pre-breeding examinations (PBE) from 2,460 spring-calved cows on 8 farms between 2014 and 2018. Cow-related details assessed were days in milk at PBE, breed, lactation number, dry period length, body condition score at calving and PBE, 305-d milk yield, predicted transmitting ability for production and fertility, the presence of a corpus luteum at PBE, and positive diagnosis the previous year. Calving details assessed were type of sire, calf sex, twinning, stillbirth, calving difficulty score, and retained fetal membranes. We conducted statistical analyses using 4 multivariable logistic regression models to identify the risk of RTD diagnosed by (1) PVD in isolation, (2) UE in isolation, (3) the presence of either PVD or UE; and (4) the presence of both PVD and UE. We accounted for herd, cow, and year as random effects in all 4 models. The overall prevalence of RTD in models 1, 2, 3, and 4 were 7.5, 6.7, 11.6, and 2.6%, respectively. Days in milk at PBE, the interaction between days in milk and retained fetal membranes, twinning, and the predicted transmitting ability for calving interval were consistently significant risk factors for positive scores in all 4 models. Considerable calving difficulty [adjusted odds ratio (AOR) = 13.64], Holstein Friesian dam breed (AOR = 2.58), first lactation (AOR = 2.39), and body condition score at PBE (AOR = 1.64) were risk factors for a positive PVD score but not for a positive UE score. Fifth lactation (AOR = 1.69), a beef-sired calf (AOR = 1.46), and the absence of a corpus luteum at PBE (AOR = 1.57) were risk factors for a positive UE score but not for a positive PVD score. These results support the hypothesis that most of the risk factors for PVD and UE are the same but some are distinctly different, implying that in some instances the 2 methods diagnose separate components of the RTD complex.
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Affiliation(s)
- E Kelly
- School of Veterinary Medicine, University College Dublin, Belfield, Dublin 4, Ireland.
| | - C G McAloon
- School of Veterinary Medicine, University College Dublin, Belfield, Dublin 4, Ireland
| | - L O'Grady
- School of Veterinary Medicine, University College Dublin, Belfield, Dublin 4, Ireland
| | - M Duane
- School of Veterinary Medicine, University College Dublin, Belfield, Dublin 4, Ireland
| | - J R Somers
- School of Veterinary Medicine, University College Dublin, Belfield, Dublin 4, Ireland
| | - M E Beltman
- School of Veterinary Medicine, University College Dublin, Belfield, Dublin 4, Ireland
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13
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Kiser JN, Clancey E, Moraes JGN, Dalton J, Burns GW, Spencer TE, Neibergs HL. Identification of loci associated with conception rate in primiparous Holstein cows. BMC Genomics 2019; 20:840. [PMID: 31718557 PMCID: PMC6852976 DOI: 10.1186/s12864-019-6203-2] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2019] [Accepted: 10/21/2019] [Indexed: 11/12/2022] Open
Abstract
Background Subfertility is a major issue facing the dairy industry as the average US Holstein cow conception rate (CCR) is approximately 35%. The genetics underlying the physiological processes responsible for CCR, the proportion of cows able to conceive and maintain a pregnancy at each breeding, are not well characterized. The objectives of this study were to identify loci, positional candidate genes, and transcription factor binding sites (TFBS) associated with CCR and determine if there was a genetic correlation between CCR and milk production in primiparous Holstein cows. Cows were bred via artificial insemination (AI) at either observed estrus or timed AI and pregnancy status was determined at day 35 post-insemination. Additive, dominant, and recessive efficient mixed model association expedited (EMMAX) models were used in two genome-wide association analyses (GWAA). One GWAA focused on CCR at first service (CCR1) comparing cows that conceived and maintained pregnancy to day 35 after the first AI (n = 494) to those that were open after the first AI (n = 538). The second GWAA investigated loci associated with the number of times bred (TBRD) required for conception in cows that either conceived after the first AI (n = 494) or repeated services (n = 472). Results The CCR1 GWAA identified 123, 198, and 76 loci associated (P < 5 × 10− 08) in additive, dominant, and recessive models, respectively. The TBRD GWAA identified 66, 95, and 33 loci associated (P < 5 × 10− 08) in additive, dominant, and recessive models, respectively. Four of the top five loci were shared in CCR1 and TBRD for each GWAA model. Many of the associated loci harbored positional candidate genes and TFBS with putative functional relevance to fertility. Thirty-six of the loci were validated in previous GWAA studies across multiple breeds. None of the CCR1 or TBRD associated loci were associated with milk production, nor was their significance with phenotypic and genetic correlations to 305-day milk production. Conclusions The identification and validation of loci, positional candidate genes, and TFBS associated with CCR1 and TBRD can be utilized to improve, and further characterize the processes involved in cattle fertility.
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Affiliation(s)
- Jennifer N Kiser
- Department of Animal Sciences and Center for Reproductive Biology, Washington State University, Pullman, WA, United States
| | - Erin Clancey
- Department of Animal Sciences and Center for Reproductive Biology, Washington State University, Pullman, WA, United States
| | - Joao G N Moraes
- Division of Animal Sciences, University of Missouri, Columbia, MO, United States
| | - Joseph Dalton
- Department of Animal and Veterinary Science, University of Idaho, Caldwell, ID, United States
| | - Gregory W Burns
- Division of Animal Sciences, University of Missouri, Columbia, MO, United States
| | - Thomas E Spencer
- Division of Animal Sciences, University of Missouri, Columbia, MO, United States
| | - Holly L Neibergs
- Department of Animal Sciences and Center for Reproductive Biology, Washington State University, Pullman, WA, United States.
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Marques L, McManus C, Peripolli V, Araújo C, Matos A, Costa J, Silva C, Sales R, Camargo Júnior R, Laureano M, Marques J. Genetic evaluation of milking buffaloes (Bubalus bubalis): bull ranking. ARQ BRAS MED VET ZOO 2019. [DOI: 10.1590/1678-4162-10819] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
ABSTRACT The objective of this study was to evaluate genetic aspects related to production and reproductive efficiency of Murrah and Mediterranean buffaloes and their crosses. A ranking of bulls from Embrapa Eastern Amazonia was also composed to guide assisted mating. Birth records of 2,322 Murrah, Mediterranean, and crossbred buffaloes from the Embrapa Eastern Amazon herd, from 1953 to 2013, as well as information on production and reproductive traits were used. Genetic analyzes were performed in the WOMBAT software using the animal model with two-trait analysis. While heritability (h2) for total milk production (TMP) and fat milk percentage (F) were generally high, for reproductive traits h2 tended to be low. Genetic correlations for TMP with the other traits were low and negative, except for TMP with calving interval (CI) and service period (SP) in the Mediterranean breed and with age at first calving (AFC) and SP in crossbred, which were positive and high. Bull 1001 had high predicted transmitting ability (PTA) for TMP, so it should transmit a greater volume of milk to his offspring, although it had a lower PTA for F. There was sufficient variability within the herd to work with genetic management for both production and reproductive efficiency.
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Affiliation(s)
- L.C. Marques
- Universidade Federal do Pará, Brazil; Embrapa Amazônia Oriental, Brazil
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15
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Coyne JM, Evans RD, Berry DP. Dressing percentage and the differential between live weight and carcass weight in cattle are influenced by both genetic and non-genetic factors1. J Anim Sci 2019; 97:1501-1512. [PMID: 30785187 DOI: 10.1093/jas/skz056] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2018] [Accepted: 02/06/2019] [Indexed: 12/20/2022] Open
Abstract
The objective of the present study was to quantify the genetic and non-genetic contributors to variability in both carcass dressing percentage and dressing difference (i.e., the difference between carcass weight and live weight immediately prior to slaughter) in young animals and cows. The datasets contained 18,479 young animals from 653 herds, and 2,887 cows from 665 herds. Live weight records within 7 d of slaughter and associated carcass weight were available for all animals. Association analyses were undertaken using linear mixed models with fixed effects for the model of young animals consisting of animal breed, days between the date of last recorded live weight and slaughter date, heterosis and recombination loss coefficients, dam parity, a 3-way interaction between whether the animal originated in a dairy or beef herd, animal sex, and age at slaughter, as well as a 2-way interaction between calendar year of slaughter and month of slaughter; contemporary group was included as a random effect. Fixed effects in the cow model were cow breed, the number of days between the date of last recorded live weight and slaughter date, heterosis and recombination loss coefficients, the number of days postcalving, parity of the cow, and a 2-way interaction between calendar year of slaughter and month of slaughter; contemporary group was included as a random effect. The mean dressing percentage (phenotypic standard deviation in parentheses) and dressing difference in young animals were 55.86% (3.21%) and 280.03 kg (41.44 kg), respectively. Steers had the heaviest dressing difference at 34.18 and 60.44 kg heavier than a 16-mo old bull and 22-mo old heifer, respectively. Dressing difference for 30-mo old Simmental steers (breed with heaviest dressing difference) was 41.66 kg heavier than 30-mo old Belgian Blue steers (breed with lightest dressing difference). The heritability of dressing percentage (0.48) and dressing difference (0.35) in young animals was relatively similar to each other, in contrast to dressing percentage (0.08) in cows which was considerably lower than dressing difference (0.28). Considerable genetic variability existed in dressing difference amongst young animals (genetic standard deviation of 15.03 kg), despite the near unity genetic correlation (0.93) between carcass weight and live weight. This therefore indicates that genetic selection for increased saleable product can be achieved by selecting for increased carcass weight while concurrently selecting for lighter animals although the opportunity is limited by the strong part-whole relationships that exists between carcass weight, live weight, and dressing difference.
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Affiliation(s)
- Jessica M Coyne
- Teagasc, Animal & Grassland Research and Innovation Centre, Moorepark, Fermoy, Co. Cork, Ireland
| | - Ross D Evans
- ICBF, Highfield House, Shinagh, Bandon, Co.Cork, Ireland
| | - Donagh P Berry
- Teagasc, Animal & Grassland Research and Innovation Centre, Moorepark, Fermoy, Co. Cork, Ireland
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16
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Meta-analysis of the relationships between reproduction, milk yield and body condition score in dairy cows. Livest Sci 2018. [DOI: 10.1016/j.livsci.2018.01.017] [Citation(s) in RCA: 44] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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17
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Ability of dairy cows to be inseminated according to breed and genetic merit for production traits under contrasting pasture-based feeding systems. Animal 2017; 11:826-835. [DOI: 10.1017/s1751731116002111] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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