Pathogen-specific patterns of milking traits in automatic milking systems

Early detection of intramammary infection (IMI) can improve animal health and welfare in dairy herds. The implementation of sensors and automatic milking systems (AMS) in dairy production inherently increases the amount of available data and hence also the potential for new approaches to mastitis management. To utilize the full potential of data from AMS and auxiliary sensors, a better understanding of physiological and pathological changes in milking traits associated with different udder pathogens may be imperative. This observational study aimed to investigate pathogen-specific patterns in milking traits recorded in AMS. The milking traits included; online somatic cell count (OCC), electrical conductivity (EC), milk yield (MY), and average milk flow rate (AMF). Data were collected for a study period of 2 years and included 101 492 milkings from 237 lactations in 169 cows from one farm. Measurements of OCC were recorded at cow-level and data on EC, MY, and AMF were obtained at quarter-level. In addition to the data obtained from the AMS, altogether 5756 quarter milk samples (QMS) were collected. Milk samples were obtained monthly for bacteriological culturing. We included findings of 13 known mastitis pathogens to study pathogen-specific patterns in milking traits. These patterns were compared with those in a baseline group consisting of cows that did not have any positive milk culture results throughout the lactation period. Patterns of the milking traits are described for all positive samples both across 305 d in milk (DIM), and in the 15-d period before a positive bacteriological sample. The association between a positive sample and the milking traits (ln(OCC), EC-IQR; the ratio between the quarter with the highest and the quarter with the lowest level of EC, and MY) for the 15 d before the detection of a pathogen was assessed using mixed effects linear regression models. All pathogens were associated with alterations in the level and variability of ln(OCC) relative to lactations with no positive bacteriological samples. A positive sample for Staph. aureus was associated with increased values for MY during the 15 d before a positive diagnosis. It is biologically plausible to interpret changes in OCC and EC-IQR as consequences of an intramammary infection (IMI), while higher MY in bacteriologically-positive cows is most likely linked to the increased risk of infection in high-yielding cows. In this study, the most notable changes in the traits (OCC and EC-IQR) were observed for Staph. aureus and Strep. dysgalactiae, followed by Strep. simulans, Strep. uberis, and Lactococcus lactis. Even if we did not detect significant associations between positive bacteriology and EC-IQR, visual assessment and descriptive statistics indicated that there might be differences suggesting that it could be an informative trait for detecting infection when combined with OCC and possibly other relevant traits using machine learning algorithms.

A Literature Review of Modeling Approaches Applied to Data Collected in Automatic Milking Systems

Automatic milking systems (AMS) have played a pioneering role in the advancement of Precision Livestock Farming, revolutionizing the dairy farming industry on a global scale. This review specifically targets papers that focus on the use of modeling approaches within the context of AMS. We conducted a thorough review of 60 articles that specifically address the topics of cows' health, production, and behavior/management Machine Learning (ML) emerged as the most widely used method, being present in 63% of the studies, followed by statistical analysis (14%), fuzzy algorithms (9%), deterministic models (7%), and detection algorithms (7%). A significant majority of the reviewed studies (82%) primarily focused on the detection of cows' health, with a specific emphasis on mastitis, while only 11% evaluated milk production. Accurate forecasting of dairy cow milk yield and understanding the deviation between expected and observed milk yields of individual cows can offer significant benefits in dairy cow management. Likewise, the study of cows' behavior and herd management in AMSs is under-explored (7%). Despite the growing utilization of machine learning (ML) techniques in the field of dairy cow management, there remains a lack of a robust methodology for their application. Specifically, we found a substantial disparity in adequately balancing the positive and negative classes within health prediction models.

Dairy Cows Are Limited in Their Ability to Increase Glucose Availability for Immune Function during Disease

Shortages of energy and glucose have been hypothesized to play a key role in the development of and responses to production diseases in dairy cows during early lactation. Given the importance of glucose for immune functions, we used a recently established method for the estimation of glucose balance (GB) to evaluate glucose availability during disease phases. A dataset comprising ration analyses as well as individual daily milk yields (MY), dry matter intake (DMI), body weights, and health records of 417 lactations (298 cows) was used to calculate individual daily GB and energy balance (EB). The magnitude and dynamics of MY, DMI, GB, and EB were evaluated in the weeks before, at, and after diagnoses of inflammatory diseases in different stages of early lactation from week in milk 1 to 15. Diagnoses were categorized as mastitis, claw and leg diseases, and other inflammatory diseases. Mixed linear models with a random intercept and slope term for each lactation were used to evaluate the effect of diagnosis on MY, DMI, GB, and EB while accounting for the background effects of week in milk, parity, season, and year. When unaffected by disease, in general, the GB of cows was close to zero in the first weeks of lactation and increased as lactation progressed. Weekly means of EB were negative throughout all lactation stages investigated. Disease decreased both the input of glucose precursors due to a reduced DMI as well as the output of glucose via milk due to a reduced MY. On average, the decrease in DMI was −1.5 (−1.9 to −1.1) kg and was proportionally higher than the decrease in MY, which averaged −1.0 (−1.4 to −0.6) kg. Mastitis reduced yield less than claw and leg disease or other diseases. On average, GB and EB were reduced by −3.8 (−5.6 to −2.1) mol C and −7.5 (−10.2 to −4.9) MJ in the week of diagnosis. This indicates the need to investigate strategies to increase the availability of glucogenic carbon for immune function during disease in dairy cows.

Optimising profitability and productivity of pasture-based dairy farms with automatic milking systems

There is a large variability in profitability and productivity between farms operating with automatic milking systems (AMS). The objectives of this study were to identify the physical factors associated with profitability and productivity of pasture-based AMS and quantify how changes in these factors would affect farm productivity. We utilised two different datasets collected between 2015 and 2019 with information from commercial pasture-based AMS farms. One contained annual physical and economic data from 14 AMS farms located in the main Australian dairy regions; the other contained monthly, detailed robot-system performance data from 23 AMS farms located across Australia, Ireland, New Zealand, and Chile. We used linear mixed models to identify the physical factors associated with different profitability (Model 1) and partial productivity measures (Model 2). Additionally, we conducted a Monte Carlo simulation to evaluate how changes in the physical factors would affect productivity. Our results from Model 1 showed that the two main factors associated with profitability in pasture-based AMS were milk harvested/robot (MH; kg milk/robot per day) and total labour on-farm (full-time equivalent). On average, Model 1 explained 69% of the variance in profitability. In turn, Model 2 showed that the main factors associated with MH were cows/robot, milk flow, milking frequency, milking time, and days in milk. Model 2 explained 90% of the variance in MH. The Monte Carlo simulation showed that if pasture-based AMS farms manage to increase the number of cows/robot from 54 (current average) to ∼ 70 (the average of the 25% highest performing farms), the probability of achieving high MH, and therefore profitability, would increase from 23% to 63%. This could make AMS more attractive for pasture-based systems and increase the rate of adoption of the technology.

Association between Udder and Quarter Level Indicators and Milk Somatic Cell Count in Automatic Milking Systems

Simple Summary

In dairy cattle herds milked by automatic systems, the absence of a human milker originates the need for control systems to monitor the milking process and cow conditions. Modern milking robots are equipped with a lot of sensors that, at each milking (2.5–3 times a day), record data on milk yield and quality, milking efficiency, cow welfare, and health with particular focus to udder conditions. Mastitis is one of the most frequent and serious diseases of dairy cow that negatively affects milk quality and yield, reduces animal welfare, and often implies the use of antimicrobial drugs. At the moment, the alerting systems for mastitis risk is generally based on monitoring milk electrical conductivity, color, and/or temperature, but these indicators have limited reliability. Other information gathered by automatic sensors, already implemented in commercial robots, could be useful to early detect mastitis. Using a multivariate approach, our study showed that the deviations over time of milk electrical conductivity, milk yield, and milk flow of single quarters in comparison with the whole udder are potential indicators, alone or in combination, for altered udder conditions. The results could be useful for the development of new algorithms more effective in the early detection of mastitis.

Abstract

Automatic Milking Systems (AMS) record a lot of information, at udder and quarter level, which can be useful for improving the early detection of altered udder health conditions. A total of 752,000 records from 1003 lactating cows milked with two types of AMS in four farms were processed with the aim of identifying new indicators, starting from the variables provided by the AMS, useful to predict the risk of high milk somatic cell count (SCC). Considering the temporal pattern, the quarter vs. udder percentage difference in milk electrical conductivity showed an increase in the fourteen days preceding an official milk control higher than 300,000 SCC/mL. Similarly, deviations over time in quarter vs. udder milk yield, average milk flow, and milking time emerged as potential indicators for high SCC. The Logistic Analysis showed that Milk Production Rate (kg/h) and the within-cow within-milking percentage variations of single quarter vs. udder milk electrical conductivity, milk yield, and average milk flow are all risk factors for high milk SCC. The result suggests that these variables, alone or in combination, and their progression over time could be used to improve the early prediction of risk situations for udder health in AMS milked herds.