Dynamics of somatic cell count (SCC) and differential SCC during and following intramammary infections

Customized voluntary waiting period before first insemination in primiparous dairy cows. Effect on milk production, fertility and health

Customized voluntary waiting period (VWP) before first insemination was tested in 18 commercial dairy herds in Sweden, to assess milk production, fertility and health in primiparous cows expected to be suited for extended VWP. Cow selection for extended VWP was based on 3 criteria in early lactation: 1) the 10% of cows with highest genomic persistency index, 2) cows with a difficult calving or disease during the first month of lactation, and 3) cows with higher yield during d 4-33 after calving than the herd average for primiparous cows. Cows meeting at least one of these criteria were randomly assigned to either the ExtExt treatment (extended VWP of at least 175 d, n = 174; calving interval (CInt) = 16.3 mo) or the ExtConv treatment (conventional VWP of maximum 100 d n = 173; CInt = 12.4 mo). Cows not meeting any of the criteria were assigned to the ConvConv treatment (conventional VWP, n = 183; CInt = 12.0 mo). There were no differences in milk yield per day in the CInt between treatments, although 305-d and whole-lactation (WL) milk yields were higher for ExtExt cows (10,371 and 13,803 kg) than ExtConv cows (9,812 and 10,257 kg). Milk yield at the last test milking before dry-off was lower in ExtExt compared with ExtConv cows (24.9 vs 28.3), however the results showed no difference in dry period length between the treatments. Regarding reproductive performance, the ExtExt cows had higher first service conception rate (FSCR; 60% vs. 45%) and lower number of inseminations per conception (NINS; 1.67 vs. 2.19), compared with the ExtConv cows. As expected, ConvConv cows had the lowest milk yield in 305-d, in WL, and per day in the CInt, however, FSCR and NINS did not differ between ConvConv cows and cows in the other 2 VWP treatments. Disease incidence was higher for cows in the ExtConv compared with the ConvConv treatment, but there was no difference between ExtExt and the 2 other VWP treatments. Further, no difference in proportion of cows with good udder health or culling rate was detected between any of the treatments, though due to low prevalence the study lacked power to draw major conclusions on these results. Thus prolonging VWP for suitable primiparous cows can produce benefits such as improved fertility in the form of higher FSCR and lower NINS, as well as lower dry-off yield, without compromising milk yield or prolonging dry period length.

Host DNA depletion methods and genome-centric metagenomics of bovine hindmilk microbiome

Bovine mastitis is a multi-etiological and complex disease, resulting in serious economic consequences for dairy farmers and industry. In recent years, the microbiological evaluation of raw milk has been investigated in-depth using next-generation sequencing approaches such as metataxonomic analysis. Despite this, host DNA is a major concern in the shotgun metagenomic sequencing of microbial communities in milk samples, and it represents a big challenge. In this study, we aimed to evaluate different methods for host DNA depletion and/or microbial DNA enrichment and assess the use of PCR-based whole genome amplification in milk samples with high somatic cell count (SCC) by using short- and long-read sequencing technologies. Our results evidenced that DNA extraction performed differently in terms of host DNA removal, impacting metagenome composition and functional profiles.. Moreover, the ratio of SCC/bacteria ultimately impacts microbial DNA yield, and samples with low SCC (SCC below 100,000 cells/mL) are the most problematic. When milk samples with high SCC (SCC above 200,000 cells/mL) underwent multiple-displacement amplification (MDA), we successfully recovered high-quality metagenome-assembled genomes (MAGs), and long-read sequencing was feasible even for samples with low DNA concentration. By associating MDA and short-read sequencing, we recovered two times more MAGs than in untreated samples, and an ongoing co-infection not reported by traditional methods was detected for mastitis pathogen. Overall, this new approach will improve the detection of mastitis-associated microorganisms and make it possible to examine host-microbiome interactions in bovine mastitis.IMPORTANCENext-generation sequencing technologies have been widely used to gain new insights into the diversity of the microbial community of milk samples and dairy products for different purposes such as microbial safety, profiling of starter cultures, and host-microbiome interactions. Milk is a complex food matrix, and additionally, the presence of host nucleic acid sequences is considered a contaminant in untargeted high-throughput sequencing studies. Therefore, genomic-centric metagenomic studies of milk samples focusing on the health-disease status in dairy cattle are still scarce, which makes it difficult to evaluate the microbial ecophysiology of bovine hindmilk. This study provides an alternative method for genome-centric metagenome studies applied to hindmilk samples with high somatic cell content, which is indispensable to examining host-microbiome interactions in bovine mastitis.

Pathogen and severity-dependent immune responses in bovine mastitis: highlight the dynamics of differential somatic cell count

Immune responses in bovine clinical mastitis (CM) probably differ depending on the causative pathogen and disease severity. The observational study aimed to investigate whether both factors are associated with the dynamics of immune indicators, including somatic cell score (SCS), white blood cell count (WBC), serum albumin/globulin (A/G) ratio, and differential somatic cell count (DSCC). We collected blood and milk samples 0, 3, 5, 7, 14, and 21 days after CM occurred in 38 cows, and grouped the cases (n=49) by disease severity and pathogen. We analyzed data using a linear mixed model considering the effects of pathogens and severity, calculated estimated-marginal means for indicators at each time point, and compared the means between groups. The dynamics of WBC varied depending on both pathogen and severity. WBC changed drastically in either severe or coliform-caused CM, slightly elevated in streptococcal mastitis, but unchanged in staphylococcal mastitis. This possibly relates to the deficiency in innate immune response toward staphylococci. The A/G ratio also changed depending on severity, as it dropped sharply only in severe CM. We observed a non-linear relationship between DSCC and SCS, possibly due to mammary epithelial cells shedding in milk when CM occurred. When cows recovering from Streptococcus dysgalatiae mastitis, DSCC decreased while SCS remained high, suggesting a healing process requiring more macrophages. Our results demonstrate that both the severity and pathogen are associated with immune responses in CM, providing insights into mastitis pathogenesis.

Novel insights into the associations between immune cell population distribution in mammary glands and milk minerals in Holstein cows

Udder health has a crucial role in sustainable milk production, and various reports have pointed out that changes in udder condition seem to affect milk mineral content. The somatic cell count (SCC) is the most recognized indicator for the determination of udder health status. Recently, a new parameter, the differential somatic cell count (DSCC), has been proposed for a more detailed evaluation of intramammary infection patterns. Specifically, the DSCC is the combined proportions of polymorphonuclear neutrophils and lymphocytes (PMN-LYM) on the total SCC, with macrophages (MAC) representing the remainder proportion. In this study, we evaluated the association between DSCC in combination with SCC on a detailed milk mineral profile in 1,013 Holstein-Friesian cows reared in 5 herds. An inductively coupled plasma-optical emission spectrometry was used to quantify 32 milk mineral elements. Two different linear mixed models were fitted to explore the associations between the milk mineral elements and first, the DSCC combined with SCC, and second, DSCC expressed as the PMN-LYM and MAC counts, obtained by multiplying the proportion of PMN-LYM and MAC by SCC. We observed a significant positive association between SCC and milk Na, S, and Fe levels. Differential somatic cell count showed an opposite behavior to the one displayed by SCC, with a negative association with Na and positive association with K milk concentrations. When considering DSCC as count, Na and K showed contrasting behavior when associated with PMN-LYM or MAC counts, with decreasing of Na content and increasing K when associated with increasing PMN-LYM counts, and increasing Na and decreasing K when associated with increasing MAC count. These findings confirmed that an increase in SCC is associated with altered milk Na and K amounts. Moreover, MAC count seemed to mirror SCC patterns, with the worsening of inflammation. Differently, PMN-LYM count exhibited patterns of associations with milk Na and K contents attributable more to LYM than PMN, given the nonpathological condition of the majority of the investigated population. An interesting association was observed for milk S content, which increased with increasing of inflammatory conditions (i.e., increased SCC and MAC count) probably attributable to its relationship with milk proteins, especially whey proteins. Moreover, milk Fe content showed positive associations with the PMN-LYM population, highlighting its role in immune regulation during inflammation. Further studies including individuals with clinical condition are needed to achieve a comprehensive view of milk mineral behavior during udder health impairment.

Usefulness of the total and differential somatic cell count based udder health group concept for evaluating herd management practices and udder health in dairy herds

Subclinical mastitis and associated economic losses are a steady challenge in the dairy industry. The combination of the well-established somatic cell count (SCC) parameter and the new differential SCC (DSCC) opens up the possibility to categorise cows into four different udder health groups (UHG) based on results from a single milk recording/dairy herd improvement (DHI) test: UHG A: healthy/normal, ≤ 200,000 cells/mL and DSCC ≤ 65 %; B: suspicious, ≤ 200,000 cells/mL and DSCC > 65 %; C: (subclinical) mastitis, > 200,000 cells/mL and DSCC > 65 %; D: chronic/persistent mastitis, > 200,000 cells/mL and DSCC ≤ 65 %. The objectives of this study were to investigate 1) herd management practises among herds in different UHG categories and 2) herd performance parameters depending on the proportion of cows in UHG A. A total number of 41 herds in Styria, Austria, and Thuringia, Germany, were visited and interviewed for the first part of the study. The herds were categorised into 3 UHG categories depending on the proportion of cows in UHG A: I = >65 %; II = 55-65 %; and III = <55 %. Those with good udder health and best herd performance (+9 % milk yields, +11 % longevity, -35 % antibiotic treatments) applied distinct preventive measures, in particular excellent cubicle management and early antibiotic treatment (P < 0.05 each). However, preventive measures were applied to a lower extent in other herds. Herds were categorised differently using the UHG concept compared to SCC alone as the UHG-based categorisation allowed to clearer distinguish herds with medium-good from those with good udder health. A total number of 129,812 regular milk recording/DHI test day results of 890 Austrian and 183 German herds was used for the second part of the study. Results revealed a trend of increasing daily production as proportions of cows in UHG A increase. In conclusion, the UHG concept allowed clearer distinction of herds with good, medium-good, and poor udder health and could be used to promote practises leading to better animal health, less antibiotic treatments, and higher milk quality.

Use of Danish National Somatic Cell Count Data to Assess the Need for Dry-Off Treatment in Holstein Dairy Cattle

In Denmark, PCR testing of dairy cattle is commonly used to select animals for the antibacterial treatment of intramammary infection (IMI) during the dry-off period. IMI is associated with a high somatic cell count (SCC), routinely recorded for milk quality control for most commercial dairy herds. This study aimed to compare SCC curves over the lactation among dairy cows with positive vs. negative PCR test results for four major IMI pathogens. Data from 133,877 PCR-tested Holstein cows from 1364 Danish conventional dairy herds were used to fit a nonlinear mixed-effects model using a modified four-parameter Wilmink function. We stratified the data into first, second, third or fourth and later parity and fitted Wilmink curves to all SCC observations between 6 and 305 days in milk. The PCR tests were taken before dry-off at the end of the lactation to investigate which animals qualified for selective dry cow therapy. A PCR Ct-value of 37 and below was used to determine if an animal was PCR positive for any of the following IMI pathogens: Staphylococcus aureus, Streptococcus agalactiae, Str. dysgalactiae and Str. uberis. Our findings showed that mean SCC curve fits were higher for PCR-positive animals in all four parity groups and across lactations. The use of SCC data fitted to the entire lactation for multiple lactations enabled quantification of overall differences in SCC curves between cattle with and without detected IMI, adjusted for parity group and stage of lactation. These findings are relevant to the use of SCC to support treatment decisions.

Association between differential somatic cell count and California Mastitis Test results in Holstein cattle

The California Mastitis Test (CMT) has been used to estimate total somatic cell count (SCC) levels in milk; however, milk with similar SCC levels occasionally shows inconsistent CMT results, which limits the use of the CMT. This observational study aimed to investigate how differential cell counts in milk influence the CMT in Holstein cattle through the novel parameters differential somatic cell count (DSCC) and macrophage proportion (MAC). We performed the CMT on d 0, 3, 5, 7, 14, and 21 after identifying mastitis, and simultaneously measured SCC, DSCC, and MAC at the quarter level. We followed 58 mastitis events occurring in 41 cows and obtained 307 quarter-level records after data cleaning. We transformed SCC to somatic cell score (SCS) and MAC to its logarithm to fit the normal distribution and analyzed the data using the cumulative logit mixed model. Results showed that both an increase in SCS (odds ratio: 3.66, 95% confidence interval: 2.89-4.64) and the logarithm of MAC (odds ratio: 4.35, 95% confidence interval: 1.91-9.91) can contribute to a higher CMT score. During the healing process of mastitis, MAC tends to increase as SCC decreases; thus, even samples with low SCC can cause positive CMT reactions. We recommend that practitioners avoid making treatment decisions based on the CMT alone. We also noted that the CMT is sensitive to subclinical mastitis with high MAC, hence it could be considered an alternative to detecting high MAC (chronic) mastitis.

Transmission Dynamics of Corynebacterium spp. Within Two Danish Dairy Cattle Herds

Intramammary infections (IMI) can cause mastitis, a prevalent and costly infectious disease in dairy cattle worldwide. The IMI is caused by a range of bacteria, including Corynebacterium spp. Knowledge of the transmission dynamics of pathogens is generally sparse but essential to support decision-making; such as input to bioeconomic models. In this observational study, we explored the transmission dynamics of Corynebacterium spp. in two different Danish dairy cattle herds by testing monthly quarter-level milk samples of all lactating cows for 1 year. We estimated the prevalence for herd 1 and 2 to 24 and 11.7%, respectively, and the mean quarter-level incidence to be 8 and 6.5% per month, respectively. We compared a model for indirect transmission via the environment with a model with the direct contagious transmission and found that the latter model best explained the data. We estimated the daily mean quarter-level transmission rate to be 0.016 and 0.018 cases/quarter-day for herd 1 and 2, respectively. The mean recovery rate was 0.012 and 0.016 for herd 1 and 2, respectively. Consequently, the basic reproduction number for herd 1 and 2 was 1.27 and 1.10, respectively. This study highlights that Corynebacterium spp. can be prevalent within a herd and transmit directly between cows. Thus, future studies should investigate cost-effective control measures against Corynebacterium spp.

Associations between different udder health groups defined based on a combination of total and differential somatic cell count and the future udder health status of dairy cows

Mastitis, in particular in its subclinical form, which may spread unnoticeable within a herd, continues to be a major challenge in the dairy industry. Somatic cell count (SCC) is a broadly used proxy for subclinical mastitis. The recently introduced Differential SCC (DSCC) representing the combined proportion of polymorphonuclear neutrophils and lymphocytes as a percentage of total SCC, can be used in combination with SCC to categorise cows into four different udder health groups (UHG) depending on actual test day results: UHG A: healthy/normal, ≤200,000 cells/mL and DSCC ≤65 %; B: suspicious, ≤200,000 cells/mL and DSCC >65 %; C: (subclinical) mastitis, >200,000 cells/mL and DSCC >65 %; D: chronic/persistent mastitis, >200,000 cells/mL and DSCC ≤65 %. The objective of our study was to investigate to what extent the UHG aid in determining different statuses of cows: I) leaving herd before next test day, II) having >200,000 cells/mL at the next test day, and III) having ≤200,000 cells/mL at the next 3 test days. Multivariable logistic regression analysis was used to evaluate these statuses based on routinely generated dairy herd improvement (DHI) data from Austria, China, Estonia, Germany, and Spain. Cows in groups C (odds ratio (OR): 2.13, 95 % confidence interval (CI): 1.95-2.34) and, particularly, D (OR: 3.91, 95 % CI: 3.31-4.62) were significantly more likely to leave herds compared to cows in group A. Late-lactating cows indicated the highest likelihood (OR: 16.03, 95 % CI: 14.44-17.81) to leave herds in our analysis. Interestingly, we found that cows in UHG B had significantly higher odds (OR: 2.77, 95 % CI: 2.58-2.98) to have >200,000 cells/mL at the next test day compared to cows in group A. As anticipated, cows in UHG B (OR: 0.40, 95 % CI: 0.38-0.42), C (OR: 0.08, 95 % CI: 0.07-0.09), and D (OR: 0.16, 95 % CI: 0.14-0.19) each were significantly less likely to have ≤200,000 cells/mL at the next 3 test days compared to cows in group A. Above described results are an example from Germany, but the same trends could be seen across all countries considered in our study. In conclusion, our findings illustrate that the UHG concept reveals additional valuable information about udder health and culling based a single test day over working with SCC only. Actual decisions in day-to-day farm management that could be taken were not investigated here and need to be further explored.