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Fan H, Luo Y, Gu F, Tian B, Xiong Y, Wu G, Nie X, Yu J, Tong J, Liao X. Artificial intelligence-based MRI radiomics and radiogenomics in glioma. Cancer Imaging 2024; 24:36. [PMID: 38486342 PMCID: PMC10938723 DOI: 10.1186/s40644-024-00682-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2022] [Accepted: 03/03/2024] [Indexed: 03/18/2024] Open
Abstract
The specific genetic subtypes that gliomas exhibit result in variable clinical courses and the need to involve multidisciplinary teams of neurologists, epileptologists, neurooncologists and neurosurgeons. Currently, the diagnosis of gliomas pivots mainly around the preliminary radiological findings and the subsequent definitive surgical diagnosis (via surgical sampling). Radiomics and radiogenomics present a potential to precisely diagnose and predict survival and treatment responses, via morphological, textural, and functional features derived from MRI data, as well as genomic data. In spite of their advantages, it is still lacking standardized processes of feature extraction and analysis methodology among different research groups, which have made external validations infeasible. Radiomics and radiogenomics can be used to better understand the genomic basis of gliomas, such as tumor spatial heterogeneity, treatment response, molecular classifications and tumor microenvironment immune infiltration. These novel techniques have also been used to predict histological features, grade or even overall survival in gliomas. In this review, workflows of radiomics and radiogenomics are elucidated, with recent research on machine learning or artificial intelligence in glioma.
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Affiliation(s)
- Haiqing Fan
- Department of Medical Imaging, The Affiliated Hospital of Guizhou Medical University, 550000, Guizhou, Guiyang, China
| | - Yilin Luo
- Department of Medical Imaging, The Affiliated Hospital of Guizhou Medical University, 550000, Guizhou, Guiyang, China
| | - Fang Gu
- Department of Medical Imaging, The Affiliated Hospital of Guizhou Medical University, 550000, Guizhou, Guiyang, China
| | - Bin Tian
- Department of Medical Imaging, The Affiliated Hospital of Guizhou Medical University, 550000, Guizhou, Guiyang, China
| | - Yongqin Xiong
- Department of Medical Imaging, The Affiliated Hospital of Guizhou Medical University, 550000, Guizhou, Guiyang, China
| | - Guipeng Wu
- Department of Medical Imaging, The Affiliated Hospital of Guizhou Medical University, 550000, Guizhou, Guiyang, China
| | - Xin Nie
- Department of Medical Imaging, The Affiliated Hospital of Guizhou Medical University, 550000, Guizhou, Guiyang, China
| | - Jing Yu
- Department of Medical Imaging, The Affiliated Hospital of Guizhou Medical University, 550000, Guizhou, Guiyang, China
| | - Juan Tong
- Department of Medical Imaging, The Affiliated Hospital of Guizhou Medical University, 550000, Guizhou, Guiyang, China
| | - Xin Liao
- Department of Medical Imaging, The Affiliated Hospital of Guizhou Medical University, 550000, Guizhou, Guiyang, China.
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Wang L, Liu Z, Xie J, Chen Y, Zhao X, You Z, Yang M, Qian W, Tian J, Yeom K, Song J. Decoding and Systematization of Medical Imaging Features of Multiple Human Malignancies. Radiol Imaging Cancer 2020; 2:e190079. [PMID: 33778732 PMCID: PMC7983692 DOI: 10.1148/rycan.2020190079] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2019] [Revised: 03/18/2020] [Accepted: 04/21/2020] [Indexed: 12/12/2022]
Abstract
Purpose To summarize the data of previously reported medical imaging features on human malignancies to provide a scientific basis for more credible imaging feature selection for future studies. Materials and Methods A search was performed in PubMed from database inception through March 23, 2018, for studies clearly stating the decoding of medical imaging features for malignancy-related objectives and/or hypotheses. The Newcastle-Ottawa scale was used for quality assessment of the included studies. Unsupervised hierarchical clustering was performed on the manually extracted features from each included study to identify the application rules of medical imaging features across human malignancies. CT images of 1000 retrospective patients with non–small cell lung cancer were used to reveal a pattern for the value distribution of complex texture features. Results A total of 5026 imaging features of malignancies affecting 20 parts of the human body from 930 original articles were collated and assessed in this study. A meta-feature construct was proposed to facilitate the investigation of details of any high-dimensional complex imaging features of malignancy. A correlation atlas was constructed to clarify the general rules of applying medical imaging features to the analysis of human malignancy. Assessment of this data revealed a pattern of value distributions of the most commonly reported texture features across human malignancies. Furthermore, the significant expression of the gene mutational signature 1B across human cancer was highly consistent with the presence of the run length imaging feature across different human malignancy types. Conclusion The results of this study may facilitate more credible imaging feature selection in all oncology tasks across a wide spectrum of human malignancies and help to reduce bias and redundancies in future medical imaging studies. Keywords: Computer Aided Diagnosis (CAD), Computer Applications-General (Informatics), Evidence Based Medicine, Informatics, Research Design, Statistics, Technology Assessment Supplemental material is available for this article. Published under a CC BY 4.0 license.
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Affiliation(s)
- Lu Wang
- School of Medical Informatics, China Medical University, Shenyang, Liaoning, China (L.W., M.Y., J.S.); Department of Radiology, Shenjing Hospital of China Medical University, Shenyang, Liaoning, China (Z.L.); Department of Radiology, China Medical University, Shenyang, Liaoning, China (J.X., Y.C., X.Z., Z.Y.); Department of Electric and Computer Engineering, University of Texas-El Paso, El Paso, Tex (W.Q.); CAS Key Laboratory of Molecular Imaging, Institute of Automation, Chinese Academy of Sciences, Beijing, China (J.T.); and Department of Radiology, Stanford University School of Medicine, 1201 Welch Rd Lucas Center PS055, Palo Alto, CA 94305 (K.Y., J.S.)
| | - Zhaoyu Liu
- School of Medical Informatics, China Medical University, Shenyang, Liaoning, China (L.W., M.Y., J.S.); Department of Radiology, Shenjing Hospital of China Medical University, Shenyang, Liaoning, China (Z.L.); Department of Radiology, China Medical University, Shenyang, Liaoning, China (J.X., Y.C., X.Z., Z.Y.); Department of Electric and Computer Engineering, University of Texas-El Paso, El Paso, Tex (W.Q.); CAS Key Laboratory of Molecular Imaging, Institute of Automation, Chinese Academy of Sciences, Beijing, China (J.T.); and Department of Radiology, Stanford University School of Medicine, 1201 Welch Rd Lucas Center PS055, Palo Alto, CA 94305 (K.Y., J.S.)
| | - Jiayi Xie
- School of Medical Informatics, China Medical University, Shenyang, Liaoning, China (L.W., M.Y., J.S.); Department of Radiology, Shenjing Hospital of China Medical University, Shenyang, Liaoning, China (Z.L.); Department of Radiology, China Medical University, Shenyang, Liaoning, China (J.X., Y.C., X.Z., Z.Y.); Department of Electric and Computer Engineering, University of Texas-El Paso, El Paso, Tex (W.Q.); CAS Key Laboratory of Molecular Imaging, Institute of Automation, Chinese Academy of Sciences, Beijing, China (J.T.); and Department of Radiology, Stanford University School of Medicine, 1201 Welch Rd Lucas Center PS055, Palo Alto, CA 94305 (K.Y., J.S.)
| | - Yuheng Chen
- School of Medical Informatics, China Medical University, Shenyang, Liaoning, China (L.W., M.Y., J.S.); Department of Radiology, Shenjing Hospital of China Medical University, Shenyang, Liaoning, China (Z.L.); Department of Radiology, China Medical University, Shenyang, Liaoning, China (J.X., Y.C., X.Z., Z.Y.); Department of Electric and Computer Engineering, University of Texas-El Paso, El Paso, Tex (W.Q.); CAS Key Laboratory of Molecular Imaging, Institute of Automation, Chinese Academy of Sciences, Beijing, China (J.T.); and Department of Radiology, Stanford University School of Medicine, 1201 Welch Rd Lucas Center PS055, Palo Alto, CA 94305 (K.Y., J.S.)
| | - Xiaoqi Zhao
- School of Medical Informatics, China Medical University, Shenyang, Liaoning, China (L.W., M.Y., J.S.); Department of Radiology, Shenjing Hospital of China Medical University, Shenyang, Liaoning, China (Z.L.); Department of Radiology, China Medical University, Shenyang, Liaoning, China (J.X., Y.C., X.Z., Z.Y.); Department of Electric and Computer Engineering, University of Texas-El Paso, El Paso, Tex (W.Q.); CAS Key Laboratory of Molecular Imaging, Institute of Automation, Chinese Academy of Sciences, Beijing, China (J.T.); and Department of Radiology, Stanford University School of Medicine, 1201 Welch Rd Lucas Center PS055, Palo Alto, CA 94305 (K.Y., J.S.)
| | - Zifan You
- School of Medical Informatics, China Medical University, Shenyang, Liaoning, China (L.W., M.Y., J.S.); Department of Radiology, Shenjing Hospital of China Medical University, Shenyang, Liaoning, China (Z.L.); Department of Radiology, China Medical University, Shenyang, Liaoning, China (J.X., Y.C., X.Z., Z.Y.); Department of Electric and Computer Engineering, University of Texas-El Paso, El Paso, Tex (W.Q.); CAS Key Laboratory of Molecular Imaging, Institute of Automation, Chinese Academy of Sciences, Beijing, China (J.T.); and Department of Radiology, Stanford University School of Medicine, 1201 Welch Rd Lucas Center PS055, Palo Alto, CA 94305 (K.Y., J.S.)
| | - Mingshu Yang
- School of Medical Informatics, China Medical University, Shenyang, Liaoning, China (L.W., M.Y., J.S.); Department of Radiology, Shenjing Hospital of China Medical University, Shenyang, Liaoning, China (Z.L.); Department of Radiology, China Medical University, Shenyang, Liaoning, China (J.X., Y.C., X.Z., Z.Y.); Department of Electric and Computer Engineering, University of Texas-El Paso, El Paso, Tex (W.Q.); CAS Key Laboratory of Molecular Imaging, Institute of Automation, Chinese Academy of Sciences, Beijing, China (J.T.); and Department of Radiology, Stanford University School of Medicine, 1201 Welch Rd Lucas Center PS055, Palo Alto, CA 94305 (K.Y., J.S.)
| | - Wei Qian
- School of Medical Informatics, China Medical University, Shenyang, Liaoning, China (L.W., M.Y., J.S.); Department of Radiology, Shenjing Hospital of China Medical University, Shenyang, Liaoning, China (Z.L.); Department of Radiology, China Medical University, Shenyang, Liaoning, China (J.X., Y.C., X.Z., Z.Y.); Department of Electric and Computer Engineering, University of Texas-El Paso, El Paso, Tex (W.Q.); CAS Key Laboratory of Molecular Imaging, Institute of Automation, Chinese Academy of Sciences, Beijing, China (J.T.); and Department of Radiology, Stanford University School of Medicine, 1201 Welch Rd Lucas Center PS055, Palo Alto, CA 94305 (K.Y., J.S.)
| | - Jie Tian
- School of Medical Informatics, China Medical University, Shenyang, Liaoning, China (L.W., M.Y., J.S.); Department of Radiology, Shenjing Hospital of China Medical University, Shenyang, Liaoning, China (Z.L.); Department of Radiology, China Medical University, Shenyang, Liaoning, China (J.X., Y.C., X.Z., Z.Y.); Department of Electric and Computer Engineering, University of Texas-El Paso, El Paso, Tex (W.Q.); CAS Key Laboratory of Molecular Imaging, Institute of Automation, Chinese Academy of Sciences, Beijing, China (J.T.); and Department of Radiology, Stanford University School of Medicine, 1201 Welch Rd Lucas Center PS055, Palo Alto, CA 94305 (K.Y., J.S.)
| | - Kristen Yeom
- School of Medical Informatics, China Medical University, Shenyang, Liaoning, China (L.W., M.Y., J.S.); Department of Radiology, Shenjing Hospital of China Medical University, Shenyang, Liaoning, China (Z.L.); Department of Radiology, China Medical University, Shenyang, Liaoning, China (J.X., Y.C., X.Z., Z.Y.); Department of Electric and Computer Engineering, University of Texas-El Paso, El Paso, Tex (W.Q.); CAS Key Laboratory of Molecular Imaging, Institute of Automation, Chinese Academy of Sciences, Beijing, China (J.T.); and Department of Radiology, Stanford University School of Medicine, 1201 Welch Rd Lucas Center PS055, Palo Alto, CA 94305 (K.Y., J.S.)
| | - Jiangdian Song
- School of Medical Informatics, China Medical University, Shenyang, Liaoning, China (L.W., M.Y., J.S.); Department of Radiology, Shenjing Hospital of China Medical University, Shenyang, Liaoning, China (Z.L.); Department of Radiology, China Medical University, Shenyang, Liaoning, China (J.X., Y.C., X.Z., Z.Y.); Department of Electric and Computer Engineering, University of Texas-El Paso, El Paso, Tex (W.Q.); CAS Key Laboratory of Molecular Imaging, Institute of Automation, Chinese Academy of Sciences, Beijing, China (J.T.); and Department of Radiology, Stanford University School of Medicine, 1201 Welch Rd Lucas Center PS055, Palo Alto, CA 94305 (K.Y., J.S.)
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Dono A, Wang E, Lopez-Rivera V, Ramesh AV, Tandon N, Ballester LY, Esquenazi Y. Molecular characteristics and clinical features of multifocal glioblastoma. J Neurooncol 2020; 148:389-397. [PMID: 32440969 DOI: 10.1007/s11060-020-03539-z] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2020] [Accepted: 05/14/2020] [Indexed: 12/31/2022]
Abstract
INTRODUCTION Glioblastomas (GBMs) usually occur as a solitary lesion; however, about 0.5-35% present with multiple lesions (M-GBM). The genetic landscape of GBMs have been thoroughly investigated; nevertheless, differences between M-GBM and single-foci GBM (S-GBM) remains unclear. The present study aimed to determine differences in clinical and molecular characteristics between M-GBM and S-GBM. METHODS A retrospective review of multifocal/multicentric infiltrative gliomas (M-IG) from our institutional database was performed. Demographics, clinical, radiological, and genetic features were obtained and compared between M-GBM IDH-wild type (IDH-WT) vs 193 S-GBM IDH-WT. Mutations were examined by a targeted next-generation sequencing assay interrogating 315 genes. RESULTS 33M-IG were identified from which 94% were diagnosed as M-GBM IDH-WT, the remaining 6% were diagnosed as astrocytomas IDH-mutant. M-GBM and S-GBM comparison revealed that EGFR alterations were more frequent in M-GBM (65% vs 42% p = 0.019). Furthermore, concomitant EGFR/PTEN alterations were more common in M-GBM vs. S-GBM (36% vs 19%) as well as compared to TCGA (21%). No statistically significant differences in overall survival were observed between M-GBM and S-GBM; however, within the M-GBM cohort, patients harboring KDR alterations had a worse survival (KDR-altered 6.7 vs KDR-WT 16.6 months, p = 0.038). CONCLUSIONS The results of the present study demonstrate that M-GBM genetically resembles S-GBM, however, M-GBM harbor higher frequency of EGFR alterations and co-occurrence of EGFR/PTEN alterations, which may account for their highly malignant and invasive phenotype. Further study of genetic alterations including differences between multifocal and multicentric GBMs are warranted, which may identify potential targets for this aggressive tumor.
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Affiliation(s)
- Antonio Dono
- Vivian L. Smith Department of Neurosurgery, The University of Texas Health Science Center at Houston, Houston, TX, USA
- Department of Pathology and Laboratory Medicine, The University of Texas Health Science Center at Houston, Houston, TX, USA
| | | | - Victor Lopez-Rivera
- Department of Neurology, The University of Texas Health Science Center at Houston, Houston, TX, USA
| | | | - Nitin Tandon
- Vivian L. Smith Department of Neurosurgery, The University of Texas Health Science Center at Houston, Houston, TX, USA
- Memorial Hermann Hospital-TMC, Houston, TX, USA
| | - Leomar Y Ballester
- Vivian L. Smith Department of Neurosurgery, The University of Texas Health Science Center at Houston, Houston, TX, USA.
- Department of Pathology and Laboratory Medicine, The University of Texas Health Science Center at Houston, Houston, TX, USA.
- Memorial Hermann Hospital-TMC, Houston, TX, USA.
| | - Yoshua Esquenazi
- Vivian L. Smith Department of Neurosurgery, The University of Texas Health Science Center at Houston, Houston, TX, USA.
- Memorial Hermann Hospital-TMC, Houston, TX, USA.
- Center for Precision Health, School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX, USA.
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Di L, Heath RN, Shah AH, Sanjurjo AD, Eichberg DG, Luther EM, de la Fuente MI, Komotar RJ, Ivan ME. Resection versus biopsy in the treatment of multifocal glioblastoma: a weighted survival analysis. J Neurooncol 2020; 148:155-164. [PMID: 32394325 DOI: 10.1007/s11060-020-03508-6] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2020] [Accepted: 04/18/2020] [Indexed: 11/28/2022]
Abstract
OBJECT Diffuse tumor invasion in multifocal/multicentric GBM (mGBM) often foreshadows poor survival outcome. The correlation between extent of resection in gliomas and patient outcome is well described. The objective of this study was to assess the effect of gross total resection compared to biopsy for mGBM on patient overall survival and progression free survival. METHODS Thirty-four patients with mGBM received either biopsy or resection of their largest enhancing lesion from 2011 to 2019. Relevant demographic, peri-operative, and radiographic data were collected. Tumor burden and extent of resection was assessed through measurement of pre-operative and post-operative contrast-enhancing volume. An adjusted Kaplan-Meier survival analysis was conducted using inverse probability of treatment weighting (IPTW) to account for the covariates of age, number of lesions, satellite tumor volume, total pre-operative tumor volume, degree of spread, and location. RESULTS Thirty-four patients were identified with sixteen (47.1%) and eighteen (52.9%) patients receiving resection and biopsy respectively. Patients receiving resection exhibited greater median overall survival but not progression free survival compared to biopsy on IPTW analysis (p = 0.026, p = 0.411). Greater than or equal to 85% extent of resection was significantly associated with increased median overall survival (p = 0.016). CONCLUSION Overall, our study suggests that resection of the largest contrast-enhancing lesion may provide a survival benefit. Our volumetric analysis suggests that a greater degree of resection results in improved survival. Employing IPTW analysis, we sought to control for selection bias in our retrospective analysis. Thus, aggressive surgical treatment of mGBM may offer improved outcomes. Further clinical trials are needed.
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Affiliation(s)
- Long Di
- Department of Neurological Surgery, University of Miami School of Medicine, 1095 NW 14th Terr, Miami, FL, 33136, USA.
| | - Rainya N Heath
- Department of Neurological Surgery, University of Miami School of Medicine, 1095 NW 14th Terr, Miami, FL, 33136, USA
| | - Ashish H Shah
- Department of Neurological Surgery, University of Miami School of Medicine, 1095 NW 14th Terr, Miami, FL, 33136, USA
| | - Alexander D Sanjurjo
- Department of Neurological Surgery, University of Miami School of Medicine, 1095 NW 14th Terr, Miami, FL, 33136, USA
| | - Daniel G Eichberg
- Department of Neurological Surgery, University of Miami School of Medicine, 1095 NW 14th Terr, Miami, FL, 33136, USA
| | - Evan M Luther
- Department of Neurological Surgery, University of Miami School of Medicine, 1095 NW 14th Terr, Miami, FL, 33136, USA
| | - Macarena I de la Fuente
- Department of Neurology, University of Miami School of Medicine, 1120 NW 14th St, Miami, FL, 33136, USA.,Sylvester Comprehensive Cancer Center, 1475 NW 12th Ave, Miami, FL, 33136, USA
| | - Ricardo J Komotar
- Department of Neurological Surgery, University of Miami School of Medicine, 1095 NW 14th Terr, Miami, FL, 33136, USA.,Sylvester Comprehensive Cancer Center, 1475 NW 12th Ave, Miami, FL, 33136, USA
| | - Michael E Ivan
- Department of Neurological Surgery, University of Miami School of Medicine, 1095 NW 14th Terr, Miami, FL, 33136, USA.,Sylvester Comprehensive Cancer Center, 1475 NW 12th Ave, Miami, FL, 33136, USA
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